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Volumn 70, Issue 2, 2004, Pages 1169-1175

Detection and Characterization of a Dehalogenating Microorganism by Terminal Restriction Fragment Length Polymorphism Fingerprinting of 16S rRNA in a Sulfidogenic, 2-Bromophenol-Utilizing Enrichment

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CELL CULTURE; DEHALOGENATION; ORGANIC COMPOUNDS; RNA;

EID: 2342464829     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.70.2.1169-1175.2004     Document Type: Article
Times cited : (35)

References (40)
  • 1
    • 0028631125 scopus 로고
    • Reductive dechlorination of PCDD/F by anaerobic cultures and sediments
    • Adriaens, P., and D. Grbíc-Galíc. 1994. Reductive dechlorination of PCDD/F by anaerobic cultures and sediments. Chemosphere 29:2253-2259.
    • (1994) Chemosphere , vol.29 , pp. 2253-2259
    • Adriaens, P.1    Grbíc-Galíc, D.2
  • 3
    • 0027995162 scopus 로고
    • A molecular technique for rapid identification of bacteria using small subunit ribosomal RNA sequences
    • Avaniss-Aghajani, E., K. Jones, D. Chapman, and C. Brunk. 1994. A molecular technique for rapid identification of bacteria using small subunit ribosomal RNA sequences. BioTechniques 17:144-146.
    • (1994) BioTechniques , vol.17 , pp. 144-146
    • Avaniss-Aghajani, E.1    Jones, K.2    Chapman, D.3    Brunk, C.4
  • 4
    • 0030915287 scopus 로고    scopus 로고
    • Reductive dechlorination of 1,2,3,4-tetrachlorodibenzo-p-dioxin and its products by anaerobic mixed cultures from Saale river sediment
    • Ballerstedt, H., A. Kraus, and U. Lechner. 1997. Reductive dechlorination of 1,2,3,4-tetrachlorodibenzo-p-dioxin and its products by anaerobic mixed cultures from Saale river sediment. Environ. Sci. Technol. 31:1749-1753.
    • (1997) Environ. Sci. Technol. , vol.31 , pp. 1749-1753
    • Ballerstedt, H.1    Kraus, A.2    Lechner, U.3
  • 5
    • 0032752387 scopus 로고    scopus 로고
    • Reductive dehalogenation and conversion of 2-chlorophenol to 3-chlorobenzoate in a methanogenic sediment community: Implications for predicting the environmental fate of chlorinated pollutants
    • Becker, J. G., D. A. Stahl, and B. R. Rittman. 1999. Reductive dehalogenation and conversion of 2-chlorophenol to 3-chlorobenzoate in a methanogenic sediment community: implications for predicting the environmental fate of chlorinated pollutants. Appl. Environ. Microbiol. 65:5169-5172.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5169-5172
    • Becker, J.G.1    Stahl, D.A.2    Rittman, B.R.3
  • 6
    • 0032986072 scopus 로고    scopus 로고
    • Isolation from estuarine sediments of a Desulfovibrio strain which can grow on lactate coupled to the reductive dehalogenation of 2,4,6-tribromophenol
    • Boyle, A. W., C. D. Phelps, and L. Y. Young. 1999. Isolation from estuarine sediments of a Desulfovibrio strain which can grow on lactate coupled to the reductive dehalogenation of 2,4,6-tribromophenol. Appl. Environ. Microbiol. 65:1133-1140.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1133-1140
    • Boyle, A.W.1    Phelps, C.D.2    Young, L.Y.3
  • 7
    • 0034038056 scopus 로고    scopus 로고
    • Isolating PCR-quality DNA from human feces with a soil DNA kit
    • Clement, B. G., and C. L. Kitts. 2000. Isolating PCR-quality DNA from human feces with a soil DNA kit. BioTechniques 28:640-643.
    • (2000) BioTechniques , vol.28 , pp. 640-643
    • Clement, B.G.1    Kitts, C.L.2
  • 8
    • 0035544054 scopus 로고    scopus 로고
    • Identification of a microorganism that links its growth to the reductive dechlorination of 2,3,4,5-chlorobiphenyl
    • Cutter, L. A., J. E. M. Watts, K. R. Sowers, and H. D. May. 2001. Identification of a microorganism that links its growth to the reductive dechlorination of 2,3,4,5-chlorobiphenyl. Environ. Microbiol. 3:699-709.
    • (2001) Environ. Microbiol. , vol.3 , pp. 699-709
    • Cutter, L.A.1    Watts, J.E.M.2    Sowers, K.R.3    May, H.D.4
  • 9
    • 0035003594 scopus 로고    scopus 로고
    • Bacterial and archaeal 16S rRNA gene and 16S rRNA dynamics during an acetate crisis in an anaerobic digestor ecosystem
    • Delbes, C., R. Moletta, and J.-J. Godon. 2001. Bacterial and archaeal 16S rRNA gene and 16S rRNA dynamics during an acetate crisis in an anaerobic digestor ecosystem. FEMS Microbiol. Ecol. 35:19-26.
    • (2001) FEMS Microbiol. Ecol. , vol.35 , pp. 19-26
    • Delbes, C.1    Moletta, R.2    Godon, J.-J.3
  • 10
    • 0034554845 scopus 로고    scopus 로고
    • Monitoring of activity dynamics of an anaerobic digester bacterial community using 16S rRNA polymerase chain reaction-single-strand conformation polymorphism analysis
    • Delbes, C., R. Moletta, and J.-J. Godon. 2000. Monitoring of activity dynamics of an anaerobic digester bacterial community using 16S rRNA polymerase chain reaction-single-strand conformation polymorphism analysis. Environ. Microbiol. 2:506-515.
    • (2000) Environ. Microbiol. , vol.2 , pp. 506-515
    • Delbes, C.1    Moletta, R.2    Godon, J.-J.3
  • 11
    • 0031844804 scopus 로고    scopus 로고
    • Quantification of Gordona amarae strains in foaming activated sludge and anaerobic digester systems with oligonucleotide hybridization probes
    • de los Reyes, F. M., F. L. de los Reyes III, M. Hernandez, and L. Raskin. 1998. Quantification of Gordona amarae strains in foaming activated sludge and anaerobic digester systems with oligonucleotide hybridization probes. Appl. Environ. Microbiol. 64:2503-2512.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2503-2512
    • De Los Reyes, F.M.1    De Los Reyes III, F.L.2    Hernandez, M.3    Raskin, L.4
  • 12
    • 0001991903 scopus 로고
    • Determinative methods of light microscopy
    • P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg, and G. B. Phillips (ed.). American Society for Microbiology, Washington, D.C.
    • Doctsch, R. N. 1981. Determinative methods of light microscopy, p. 21-33. In P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg, and G. B. Phillips (ed.), Manual of methods for general bacteriology. American Society for Microbiology, Washington, D.C.
    • (1981) Manual of Methods for General Bacteriology , pp. 21-33
    • Doctsch, R.N.1
  • 13
    • 0035210528 scopus 로고    scopus 로고
    • Coexistence of a sulphate-reducing Desulfovibrio species and the dehalore-spiring Desulfitobacterium frappieri TCE1 in defined chemostat cultures grown with various combinations of sulfate and tetrachloroethene
    • Drzyzga, O., J. Gerritse, J. A. Dijk, H. Elissen, and J. C. Gottschal. 2001. Coexistence of a sulphate-reducing Desulfovibrio species and the dehalore-spiring Desulfitobacterium frappieri TCE1 in defined chemostat cultures grown with various combinations of sulfate and tetrachloroethene. Environ. Microbiol. 3:92-99.
    • (2001) Environ. Microbiol. , vol.3 , pp. 92-99
    • Drzyzga, O.1    Gerritse, J.2    Dijk, J.A.3    Elissen, H.4    Gottschal, J.C.5
  • 14
    • 16544383694 scopus 로고    scopus 로고
    • Organohalides - A global perspective
    • M. M. Häggblom and I. D. Bossert (ed.). Kluwer Academic Publishers, Boston, Mass.
    • Häggblom, M. M., and I. D. Bossert. 2003. Organohalides - a global perspective, p. 3-29. In M. M. Häggblom and I. D. Bossert (ed.), Dehalogenation: microbial processes and environmental applications. Kluwer Academic Publishers, Boston, Mass.
    • (2003) Dehalogenation: Microbial Processes and Environmental Applications , pp. 3-29
    • Häggblom, M.M.1    Bossert, I.D.2
  • 15
    • 0027399550 scopus 로고
    • Influence of alternative electron acceptors on the anaerobic biodegradability of chlorinated phenols and benzoic acids
    • Häggblom, M. M., M. D. Rivera, and L. Y. Young. 1993. Influence of alternative electron acceptors on the anaerobic biodegradability of chlorinated phenols and benzoic acids. Appl. Environ. Microbiol. 59:1162-1167.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1162-1167
    • Häggblom, M.M.1    Rivera, M.D.2    Young, L.Y.3
  • 16
    • 0028906072 scopus 로고
    • Anaerobic degradation of halogenated phenols by sulfate-reducing consortia
    • Häggblom, M. M., and L. Y. Young. 1995. Anaerobic degradation of halogenated phenols by sulfate-reducing consortia. Appl. Environ. Microbiol. 61:1546-1550.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1546-1550
    • Häggblom, M.M.1    Young, L.Y.2
  • 17
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., K. L. Pitulle, K. L. Hershberger, and N. R. Pace. 1998. Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol. 180:366-376.
    • (1998) J. Bacteriol. , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, K.L.2    Hershberger, K.L.3    Pace, N.R.4
  • 18
    • 0010008845 scopus 로고
    • Can we estimate bacterial growth rates from ribosomal RNA content?
    • I. Joint (ed.). Springer-Verlag, Berlin, Germany
    • Kemp, P. F. 1995. Can we estimate bacterial growth rates from ribosomal RNA content?, p. 279-302. In I. Joint (ed.), Molecular ecology of aquatic microbes, vol. 38. Springer-Verlag, Berlin, Germany.
    • (1995) Molecular Ecology of Aquatic Microbes , vol.38 , pp. 279-302
    • Kemp, P.F.1
  • 19
    • 0027338308 scopus 로고
    • Estimating the growth rate of slowly growing marine bacteria from RNA content
    • Kemp, P. F., S. Lee, and J. LaRoche. 1993. Estimating the growth rate of slowly growing marine bacteria from RNA content. Appl. Environ. Microbiol. 59:2594-2601.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2594-2601
    • Kemp, P.F.1    Lee, S.2    LaRoche, J.3
  • 20
    • 0030925789 scopus 로고    scopus 로고
    • Quantification of total RNA by ethidium bromide fluorescence may not accurately reflect the RNA mass
    • Kerkhof, L. 1997. Quantification of total RNA by ethidium bromide fluorescence may not accurately reflect the RNA mass. J. Biochem. Biophys. Methods 34:147-154.
    • (1997) J. Biochem. Biophys. Methods , vol.34 , pp. 147-154
    • Kerkhof, L.1
  • 21
    • 0032855859 scopus 로고    scopus 로고
    • Small ribosomal RNA content in marine Proteobacteria during non-steady-state growth
    • Kerkhof, L., and P. Kemp. 1999. Small ribosomal RNA content in marine Proteobacteria during non-steady-state growth. FEMS Microbiol. Ecol. 30: 253-260.
    • (1999) FEMS Microbiol. Ecol. , vol.30 , pp. 253-260
    • Kerkhof, L.1    Kemp, P.2
  • 22
    • 0027289343 scopus 로고
    • Comparison of nucleic acid hybridization and fluorometry for measurement of the relationship between RNA/DNA ratio and growth rate in a marine bacterium
    • Kerkhof, L., and B. B. Ward. 1993. Comparison of nucleic acid hybridization and fluorometry for measurement of the relationship between RNA/DNA ratio and growth rate in a marine bacterium. Appl. Environ. Microbiol. 59:1303-1309.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1303-1309
    • Kerkhof, L.1    Ward, B.B.2
  • 23
    • 0032815602 scopus 로고    scopus 로고
    • Community analyses of sulfidogenic 2-bromophenol-dehalogenating and phenol-degrading microbial consortia
    • Knight, V. K., L. J. Kerkhof, and M. M. Häggblom. 1999. Community analyses of sulfidogenic 2-bromophenol-dehalogenating and phenol-degrading microbial consortia. FEMS Microbiol. Ecol. 29:137-147.
    • (1999) FEMS Microbiol. Ecol. , vol.29 , pp. 137-147
    • Knight, V.K.1    Kerkhof, L.J.2    Häggblom, M.M.3
  • 24
    • 0342813115 scopus 로고    scopus 로고
    • Dehalogenation and biodegradation of brominated phenols and benzoic acids under iron-reducing, sulfidogenic, and methanogenic conditions
    • Monserrate, E., and M. M. Häggblom. 1997. Dehalogenation and biodegradation of brominated phenols and benzoic acids under iron-reducing, sulfidogenic, and methanogenic conditions. Appl. Environ. Microbiol. 63:3911-3915.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3911-3915
    • Monserrate, E.1    Häggblom, M.M.2
  • 25
    • 0343674028 scopus 로고    scopus 로고
    • Quantitation of the population size and metabolic activity of a resin acid degrading bacterium in activated sludge using slot-blot hybridization to measure the rRNA:rRNA gene ratio
    • Muttray, A. F., and W. W. Mohn. 1999. Quantitation of the population size and metabolic activity of a resin acid degrading bacterium in activated sludge using slot-blot hybridization to measure the rRNA:rRNA gene ratio. Microb. Ecol. 38:348-357.
    • (1999) Microb. Ecol. , vol.38 , pp. 348-357
    • Muttray, A.F.1    Mohn, W.W.2
  • 26
    • 0031833057 scopus 로고    scopus 로고
    • RNA/DNA ratio as an indicator of metabolic activity in resin acid-degrading bacteria
    • Muttray, A. F., and W. W. Mohn. 1998. RNA/DNA ratio as an indicator of metabolic activity in resin acid-degrading bacteria. Water Sci. Technol. 37: 89-93.
    • (1998) Water Sci. Technol. , vol.37 , pp. 89-93
    • Muttray, A.F.1    Mohn, W.W.2
  • 27
    • 0035672806 scopus 로고    scopus 로고
    • Population dynamics and metabolic activity of Pseudomonas abietaniphila BKME-9 within pulp mill wastewater microbial communities assayed by competitive PCR and RT-PCR
    • Muttray, A. F., Z. T. Yu, and W. W. Mohn. 2001. Population dynamics and metabolic activity of Pseudomonas abietaniphila BKME-9 within pulp mill wastewater microbial communities assayed by competitive PCR and RT-PCR. FEMS Microbiol. Ecol. 38:21-31.
    • (2001) FEMS Microbiol. Ecol. , vol.38 , pp. 21-31
    • Muttray, A.F.1    Yu, Z.T.2    Mohn, W.W.3
  • 28
    • 0003066510 scopus 로고
    • Studies on the role of ribonucleic acid in the growth of bacteria
    • Neidhardt, F. C., and B. Magasanik. 1960. Studies on the role of ribonucleic acid in the growth of bacteria. Biochim. Biophys. Acta 42:99-116.
    • (1960) Biochim. Biophys. Acta , vol.42 , pp. 99-116
    • Neidhardt, F.C.1    Magasanik, B.2
  • 29
    • 0033140436 scopus 로고    scopus 로고
    • Identification of the metabolically active members of a bacterial community in a polychlorinated biphenyl-polluted moorland soil
    • Nogales, B., E. R. B. Moore, W.-R. Abraham, and K. N. Timmis. 1999. Identification of the metabolically active members of a bacterial community in a polychlorinated biphenyl-polluted moorland soil. Environ. Microbiol. 1:199-212.
    • (1999) Environ. Microbiol. , vol.1 , pp. 199-212
    • Nogales, B.1    Moore, E.R.B.2    Abraham, W.-R.3    Timmis, K.N.4
  • 30
    • 0035072290 scopus 로고    scopus 로고
    • Molecular characterization of sulfate-reducing bacteria in anaerobic hydrocarbon-degrading consortia and pure cultures using the dissimilatory sulfite reductase (dsrAB) genes
    • Perez-Jimenez, J. R., L. Y. Young, and L. J. Kerkhof. 2001. Molecular characterization of sulfate-reducing bacteria in anaerobic hydrocarbon-degrading consortia and pure cultures using the dissimilatory sulfite reductase (dsrAB) genes. FEMS Microbiol. Ecol. 1212:1-6.
    • (2001) FEMS Microbiol. Ecol. , vol.1212 , pp. 1-6
    • Perez-Jimenez, J.R.1    Young, L.Y.2    Kerkhof, L.J.3
  • 31
    • 0027264175 scopus 로고
    • Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms
    • Poulsen, L. K., G. Ballard, and D. A. Stahl. 1993. Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms. Appl. Environ. Microbiol. 59:1354-1360.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1354-1360
    • Poulsen, L.K.1    Ballard, G.2    Stahl, D.A.3
  • 32
    • 0037375060 scopus 로고    scopus 로고
    • Detection by PCR of reductive dehalogenase motifs in a sulfidogenic 2-bromophenol-degrading consortium enriched from estuarine sediment
    • Rhee, S., D. Fennell, M. Häggblom, and L. Kerkhof. 2003. Detection by PCR of reductive dehalogenase motifs in a sulfidogenic 2-bromophenol-degrading consortium enriched from estuarine sediment. FEMS Microbiol. Ecol. 43: 317-324.
    • (2003) FEMS Microbiol. Ecol. , vol.43 , pp. 317-324
    • Rhee, S.1    Fennell, D.2    Häggblom, M.3    Kerkhof, L.4
  • 33
    • 0031736055 scopus 로고    scopus 로고
    • Assessment of changes in a microbial community structure during operation of an ammonia biofilter with molecular tools
    • Sakano, Y., and L. J. Kerkhof. 1998. Assessment of changes in a microbial community structure during operation of an ammonia biofilter with molecular tools. Appl. Environ. Microbiol. 64:4877-4882.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4877-4882
    • Sakano, Y.1    Kerkhof, L.J.2
  • 34
    • 0032933229 scopus 로고    scopus 로고
    • Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments
    • Scala, D. J., and L. J. Kerkhof. 1999. Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments. Appl. Environ. Microbiol. 65: 1681-1687.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1681-1687
    • Scala, D.J.1    Kerkhof, L.J.2
  • 35
    • 0001140586 scopus 로고
    • Dependency on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium
    • Schaechter, M., O. Maalow, and N. O. Kjelgaard. 1958. Dependency on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium. J. Gen. Microbiol. 19:592-606.
    • (1958) J. Gen. Microbiol. , vol.19 , pp. 592-606
    • Schaechter, M.1    Maalow, O.2    Kjelgaard, N.O.3
  • 36
    • 0034045262 scopus 로고    scopus 로고
    • Isolation and characterization of Desulfovibrio dechloracetivorans sp. nov., a marine dechlorinating bacterium growing by coupling the oxidation of acetate to the reductive dechlorination of 2-chlorophenol
    • Sun, B., J. R. Cole, R. A. Sanford, and J. M. Tiedje. 2000. Isolation and characterization of Desulfovibrio dechloracetivorans sp. nov., a marine dechlorinating bacterium growing by coupling the oxidation of acetate to the reductive dechlorination of 2-chlorophenol. Appl. Environ. Microbiol. 66: 2408-2413.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2408-2413
    • Sun, B.1    Cole, J.R.2    Sanford, R.A.3    Tiedje, J.M.4
  • 37
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M. T., and S. T. Glovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Glovannoni, S.T.2
  • 38
    • 0035661320 scopus 로고    scopus 로고
    • Anaerobic reductive dechlorination of chlorinated dioxins in estuarine sediments
    • Vargas, C., D. E. Fennell, and M. M. Häggblom. 2001. Anaerobic reductive dechlorination of chlorinated dioxins in estuarine sediments. Appl. Microbiol. Biotechnol. 57:786-790.
    • (2001) Appl. Microbiol. Biotechnol. , vol.57 , pp. 786-790
    • Vargas, C.1    Fennell, D.E.2    Häggblom, M.M.3
  • 39
    • 0035070771 scopus 로고    scopus 로고
    • Development of primers for amplifying genes encoding CprA-and PceA-like reductive dehalogenases in anaerobic microbial consortia dechlorinating trichlorobenzene and 1,2-dichloropropane
    • von Wintzingerode, F., C. Schlotelburg, R. Hauk, W. Hegemann, and U. B. Göbel. 2001. Development of primers for amplifying genes encoding CprA-and PceA-like reductive dehalogenases in anaerobic microbial consortia dechlorinating trichlorobenzene and 1,2-dichloropropane. FEMS Microbiol. Ecol. 35:189-196.
    • (2001) FEMS Microbiol. Ecol. , vol.35 , pp. 189-196
    • Von Wintzingerode, F.1    Schlotelburg, C.2    Hauk, R.3    Hegemann, W.4    Göbel, U.B.5
  • 40
    • 0001614967 scopus 로고
    • The dissimilatory sulfate- and sulfur-reducing bacteria
    • A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.). Springer-Verlag, New York, N.Y.
    • Widdel, F., and T. A. Hansen. 1992. The dissimilatory sulfate- and sulfur-reducing bacteria, p. 583-624. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes. Springer-Verlag, New York, N.Y.
    • (1992) The Prokaryotes , pp. 583-624
    • Widdel, F.1    Hansen, T.A.2


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