SQUARE - Determining reliable regions in sequence alignments

Bioinformatics

Volumn 20, Issue 6, 2004, Pages 974-975

  Tress, Michael L ^a   Graña, Osvaldo ^a   Valencia, Alfonso ^a  

^a CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; GENETIC DATABASE; INTERMETHOD COMPARISON; INTERNET; METHODOLOGY; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; RELIABILITY; SCORING SYSTEM; SEQUENCE ALIGNMENT; SERVER FOR QUICK ALIGNMENT RELIABILIY EVALUATION;

EID: 2342421317     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth032     Document Type: Article

References (7)

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2. Berman,H.M., Westbrook,J., Feng,Z., Gilliland,F., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.J. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
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6. Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
7. Tress,M.L., Jones,D.T. and Valencia,A. (2003) Predicting reliable regions in protein alignments from sequence profiles. J. Mol. Biol., 330, 705-718.