Ubiquinone reduction in the photosynthetic reaction centre of Rhodobacter sphaeroides: Interplay between electron transfer, proton binding and flips of the quinone ring

Biochemical Society Transactions

Volumn 33, Issue 4, 2005, Pages 845-850

  Mulkidjanian, A Y ^a,b,c   Kozlova, M A ^a,c   Cherepanov, D A ^d  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

^b MAX PLANCK INSTITUTE OF BIOPHYSICS   (Germany)

^c UNIVERSITY OF OSNABRÜCK   (Germany)

^d RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

Author keywords

Conformational gating; Protein dynamics; Proton transfer; Rhodobacter sphaeroides; Semiquinone; Ubiquinol

Indexed keywords

PROTEIN QUINONE Q A; PROTEIN QUINONE Q B; UBIQUINONE; UNCLASSIFIED DRUG;

CONFERENCE PAPER; ELECTRON TRANSPORT; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME STRUCTURE; MOLECULAR DYNAMICS; MOLECULAR MODEL; NONHUMAN; PHOTOSYNTHESIS; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION; PROTON TRANSPORT; REDUCTION; RHODOBACTER SPHAEROIDES; SIMULATION; TEMPERATURE DEPENDENCE;

BINDING SITES; ELECTRON TRANSPORT; KINETICS; OXIDATION-REDUCTION; PHOTOSYNTHESIS; QUINONES; RHODOBACTER SPHAEROIDES; UBIQUINONE;

RHODOBACTER SPHAEROIDES;

EID: 23244444450     PISSN: 03005127     EISSN: None     Source Type: Journal    
DOI: 10.1042/BST0330845     Document Type: Conference Paper

References (62)

1. Lancaster, C.R.D., Ermler, U. and Michel, H. (1995) in Anoxygenic Photosynthetic Bacteria (Blankenship, R.E., Madigan, M.T. and Bauer, C.E., eds.), pp. 503-526, Kluwer Academic Publishers, Dordrecht
2. Chance, B., De Vault, D., Frauenfelder, H. and Marcus, R.A. (eds.) (1979) Tunneling in Biological Systems, Academic Press, New York
3. Chernavskii, D.S., Frolov, E.N., Goldanskii, V.I., Kononenko, A.A. and Rubin, A.B. (1980) Proc. Natl. Acad. Sci. U.S.A. 77, 7218-7221
4. Marcus, R.A. and Sutin, N. (1985) Biochim. Biophys. Acta 811, 265-322
5. Moser, C.C., Keske, J.M., Warncke, K., Farid, R.S. and Dutton, P.L. (1992) Nature (London) 355, 796-802
6. Stowell, M.H., McPhillips, T.M., Rees, D.C., Soltis, S.M., Abresch, E. and Feher, G. (1997) Science 276, 812-816
7. McMahon, B.H., Muller, J.D., Wraight, C.A. and Nienhaus, G.U. (1998) Biophys. J. 74, 2567-2587
8. Cherepanov, D.A., Krishtalik, L.I. and Mulkidjanian, A.Y. (2001) Biophys. J. 80, 1033-1049
9. Lancaster, C.R.D. and Michel, H. (1997) Structure 5, 1339-1359
10. Mulkidjanian, A.Y. (1999) FEBS Lett. 463, 199-204
11. Paddock, M.L., Feher, G. and Okamura, M.Y. (2003) FEBS Lett. 555, 45-50
12. Wraight, C.A. (2004) Front. Biosci. 9, 309-327
13. Lukashev, E.P., Timofeev, K.N., Kononenko, A.A., Venediktov, P.S. and Rubin, A.B. (1976) Photosynthetica 10, 423-430
14. Berg, A.I., Knox, P.P., Kononenko, A.A., Frolov, E.N., Khrymova, I.N., Rubin, A.B., Likhtenshtein, G.I., Goldanskii, V.I., Parak, F., Bucl, M. et al. (1979) Mol. Biol. (MOSCOW) 13, 58-74
15. Kleinfeld, D., Okamura, M.Y. and Feher, G. (1984) Biochemistry 23, 5780-5786
16. Francia, F., Palazzo, G., Mallardi, A., Cordone, L. and Venturoli, G. (2003) Biophys. J. 85, 2760-2775
17. Vermeglio, A. and Clayton, R.K. (1977) Biochim. Biophys. Acta 461, 159-165
18. Takahashi, E., Maroti, P. and Wraight, C.A. (1992) in Electron and Proton Transfer in Chemistry and Biology (Müller, A., Diemann, E., Junge, W. and Ratajczak, H., eds.), pp. 219-236, Elsevier, Amsterdam
19. Tiede, D.M., Vazquez, J., Cordova, J. and Marone, P.A. (1996) Biochemistry 35, 10763-10775
20. Tiede, D.M., Utschig, L., Hanson, D.K. and Gallo, D.M. (1998) Photosynth. Res. 55, 267-273
21. Li, J.L., Gilroy, D., Tiede, D.M. and Gunner, M.R. (1998) Biochemistry 37, 2818-2829
22. Graige, M.S., Feher, G. and Okamura, M.Y. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 11679-11684
23. Li, J.L, Takahashi, E. and Gunner, M.R. (2000) Biochemistry 39, 7445-7454
24. Wraight, C.A. (1979) Biochim. Biophys. Acta 548, 309-327
25. McPherson, P.H., Okamura, M.Y. and Feher, G. (1988) Biochim. Biophys. Acta 934, 348-368
26. Maroti, P. and Wraight, C.A. (1988) Biochim. Biophys. Acta 934, 329-347
27. McPherson, P.M., Okamura, M.Y. and Feher, G. (1993) Biochim. Biophys. Acta 1144, 309-324
28. Petty, K.M. and Dutton, P.L. (1976) Arch. Biochem. Biophys. 172, 335-345
29. Gopta, O.A., Cherepanov, D.A., Junge, W. and Mulkidjanian, A.Y. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 13159-13164
30. Cherepanov, D.A., Feniouk, B.A., Junge, W. and Mulkidjanian, A.Y. (2003) Biophys. J. 85, 1307-1316
31. Cherepanov, D.A., Junge, W. and Mulkidjanian, A.Y. (2004) Biophys. J. 86, 665-680
32. Mulkidjanian, A.Y., Cherepanov, D.A., Heberle, J. and Junge, W. (2005) Biochemistry (Moscow) 70, 251-256
33. Drachev, L.A., Mamedov, M.D., Mulkidjanian, A.Y., Semenov, A.Y., Shinkarev, V.P. and Verkhovsky, M.I. (1988) FEBS Lett. 233, 315-318
34. Drachev, L.A., Mamedov, M.D., Mulkidjanian, A.Y., Semenov, A.Y., Shinkarev, V.P. and Verkhovsky, M.I. (1990) FEBS Lett. 259, 324-326
35. Gopta, O.A., Bloch, D.A., Cherepanov, D.A. and Mulkidjanian, A.Y. (1997) FEBS Lett. 412, 490-494
36. Brzezinski, P., Paddock, M.L., Okamura, M.Y. and Feher, G. (1997) Biochim. Biophys. Acta 1321, 149-156
37. Gopta, O.A., Cherepanov, D.A., Semenov, A.Y., Mulkidjanian, A.Y. and Bloch, D.A. (1998) Photosynth. Res. 55, 309-316
38. Fritzsch, G., Koepke, J., Diem, R., Kuglstatter, A. and Baciou, L. (2002) Acta Crystallogr. D 58, 1660-1663
39. Cherepanov, D.A., Bibikov, S.I., Bibikova, M.V., Bloch, D.A., Drachev, L.A., Gopta, O.A., Oesterhelt, D., Semenov, A.Y. and Mulkidjanian, A.Y. (2000) Biochim. Biophys. Acta 1459, 10-34
40. Mulkidjanian, A.Y. (2005) Biochim. Biophys. Acta, in the press
41. Breton, J. (2004) Biochemistry 43, 3318-3326
42. Brudler, R., de Groot, H.J., van Liemt, W.B., Gast, P., Hoff, A.J., Lugtenburg, J. and Gerwert, K. (1995) FEBS Lett. 370, 88-92
43. Hienerwadel, R., Grzybek, S., Fogel, C., Kreutz, W., Okamura, M.Y., Paddock, M.L., Breton, J., Nabedryk, E. and Mantele, W. (1995) Biochemistry 34, 2832-2843
44. Nabedryk, E., Breton, J., Hienerwadel, R., Fogel, C., Mantele, W., Paddock, M.L. and Okamura, M.Y. (1995) Biochemistry 34, 14722-14732
45. Shinkarev, V.P., Timofeev, K.N., Cherepanov, D.A. and Kononenko, A.A. (1987) Biofizika 32,168-169
46. Shinkarev, V.R., Takahashi, E. and Wraight, C.A. (1993) Biochim. Biophys. Acta 1142, 214-216
47. Ermler, U., Fritzsch, G., Buchanan, S.K. and Michel, H. (1994) Structure 2, 925-936
48. Nonella, M. and Schulten, K. (1991) J. Phys. Chem. 95, 2059-2067
49. Alexov, E.G. and Gunner, M.R. (1999) Biochemistry 38, 8253-8270
50. Ishikita, H. and Knapp, E.W. (2004) J. Am. Chem. Soc. 126, 8059-8064
51. Paddock, M.L., Flores, M., Isaacson, R., Chang, C., Selvadurey, P., Feher, G. and Okamura, M.Y. (2005) Biophys. J. 88, 204a
52. Brzezinski, P., Okamura, M.Y. and Feher, G. (1992) in The Photosynthetic Bacterial Reaction Center II (Breton, J. and Vermeglio, A., eds.), pp. 321-330, Plenum Press, New York
53. Hienerwadel, R., Grzybek, S., Paddock, M., Okamura, M. and Mäntele, W. (1997) in Reaction Centers of Photosynthetic Purple Bacteria: Structure, Spectroscopy, Dynamics (Breton, J., Nabedryk, E. and Vermeglio, A., eds.), CEA, Direction des Sciences du Vivant, Cadarache, France
54. Ginet, N. and Lavergne, J. (2001) Biochemistry 40, 1812-1823
55. Maroti, P., Hanson, D.K., Schiffer, M. and Sebban, P. (1995) Nat. Struct. Biol. 2, 1057-1059
56. Kalman, L. and Maroti, P. (1994) Biochemistry 33, 9237-9244
57. Tandori, J., Maroti, P., Alexov, E., Sebban, P. and Baciou, L. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 6702-6706
58. Kozlova, M.A., Cherepanov, D.A., Baciou, L., Sebban, P. and Mulkidjanian, A.Y. (2005) in Photosynthesis: Fundamental Aspects to Global Perspectives (van der Est, A. and Bruce, D., eds.), pp. 222-224, Montreal
59. Kale, L., Skeel, R., Bhandarkar, M., Brunner, R., Gursoy, A., Krawetz, N., Phillips, J., Shinozaki, A., Varadarajan, K. and Schulten, K. (1999) J. Comput. Phys. 151, 283-312
60. MacKerell, Jr, A.D., Bashford, D., Bellott, M., Dunbrack, Jr, R.L., Evanseck, J.D., Field, M.J., Fischer, S., Gao, J., Guo, H., Ha, S. et al. (1998) J. Phys. Chem. B 102, 3586-3616
61. Kuglstatter, A., Ermler, U., Michel, H., Baciou, L. and Fritzsch, G. (2001) Biochemistry 40, 4253-4260
62. Chang, C.-H., El-Kabbani, O., Tiede, D., Norris, J. and Schiffer, M. (1991) Biochemistry 30, 5352-5360