Variation of Ser-L223 hydrogen bonding with the QB redox state in reaction centers from Rhodobacter sphaeroides

Journal of the American Chemical Society

Volumn 126, Issue 25, 2004, Pages 8059-8064

  Ishikita, Hiroshi ^a   Knapp, Ernst Walter ^a  

^a FREIE UNIVERSITÄT BERLIN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CRYSTAL STRUCTURE; FOURIER TRANSFORM INFRARED SPECTROSCOPY; IRON; OXYGEN; PHOTOSYNTHESIS; REDOX REACTIONS;

NEUTRAL CHARGE STATES; PROTONATION; REACTION CENTERS;

HYDROGEN BONDS;

ASPARTIC ACID; CARBONYL DERIVATIVE; NONHEME IRON PROTEIN; OXYGEN; QUINONE DERIVATIVE; SERINE; UBIQUINONE;

ARTICLE; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; HYDROGEN BOND; NONHUMAN; OXIDATION REDUCTION POTENTIAL; OXIDATION REDUCTION STATE; PHOTOSYNTHESIS; PROTON TRANSPORT; REDUCTION; RHODOBACTER SPHAEROIDES;

ASPARTIC ACID; BINDING SITES; HYDROGEN BONDING; LIGHT; OXIDATION-REDUCTION; OXYGEN; PHOTONS; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PROTEIN CONFORMATION; RHODOBACTER SPHAEROIDES; SERINE; SPECTROPHOTOMETRY; UBIQUINONE;

EID: 3042687860     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja038092q     Document Type: Article

References (52)

1. Stowell, M. H. B.; McPhillips, T. M.; Rees, D. C.; Solitis, S. M.; Abresch, E.; Feher, E. Science 1997, 276, 812-816.
2. Ermler, U.; Fritzsch, G.; Buchanan, S. K.; Michel, H. Structure 1994, 2, 925-936.
3. Graige, M. S.; Paddock, M. L.; Bruce, J. M.; Feher, G.; Okamura, M. Y. J. Am. Chem. Soc. 1996, 118, 9005-9016.
4. Gerencser, L.; Maroti, P. Biochemistry 2001, 40, 1850-1860.
5. Rabenstein, B.; Ullmann, G. M.; Knapp, E. W. Biochemistry 2000, 39, 10487-10496.
6. Ishikita, H.; Morra, G.; Knapp, E. W. Biochemistry 2003, 42, 3882-3892.
7. Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. J. Comput. Chem. 1983, 4, 187-217.
8. MacKerell, A. D. J.; Bashford, D.; Bellott, M.; Dunbrack, R. L., Jr.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; D. Joseph-McCarthy, D.; Kuchnir, L.; Kuczera, K.; Lau, F. T. K.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D. T.; Prodhom, B.; Reiher, W. E., III; Roux, B.; Schlenkrich, M.; Smith, J. C.; Stote, R.; Straub, J.; Watanabe, M.; Wiórkiewicz-Kuczera, J.; Yin, D.; Karplus, M. J. Phys. Chem. B 1998, 102, 3586-3616.
9. Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D. J. Chem. Phys. 1983, 79, 926-935.
10. Bashford, D.; Karplus, M. Biochemistry 1990, 29, 10219-10225.
11. Rabenstein, B. Karlsberg online manual 1999, http://agknapp.chemie.fu- berlin.de/karlsberg/.
12. Rabenstein, B.; Ullmann, G. M.; Knapp, E. W. Biochemistry 1998, 37, 2488-2495.
13. Rabenstein, B.; Ullmann, G. M.; Knapp, E. W. Eur. Biphys. J. 1998, 27, 626-637.
14. Honig, B.; Nicholls, A. Science 1995, 268, 1144-1149.
15. Warshel, A.; Russel, S. T. Q. Rev. Biophys. 1984, 17, 283-422.
16. Warshel, A.; Åqvist, J. Annu. Rev. Biophys. Biophys. Chem. 1991, 20, 267-298.
17. Warshel, A.; Papazyan, A.; Muegge, I. J. Biol. Inorg. Chem. 1997, 2, 143-152.
18. Ishikita, H.; Knapp, E. W. J. Biol. Chem. 2003, 52002-52011.
19. Prince, R. C.; Dutton, P. L.; Bruce, J. M. FEBS Lett. 1983, 160, 273-276.
20. Page, C. C.; Moser, C. C.; Chen, X.; Dutton, P. L. Nature 1999, 402, 47-52.
21. Jordan, P.; Fromme, P.; Witt, H. T.; Klukas, O.; Saenger, W.; Krauss, N. Nature 2001, 411, 909-917.
22. Li, J.; Takahashi, E.; Gunner, M. R. Biochemistry 2000, 39, 7445-7454.
23. Schlodder, E.; Falkenberg, K.; Gergeleit, M.; Brettel, K. Biochemistry 1998, 37, 9466-9476.
24. Moser, C. C.; Keske, J. M.; Warncke, F.; Farid, R. S.; Dutton, P. L. Nature 1992, 355, 796-802.
25. Nabedryk, E.; Breton, J.; Hienerwadel, R.; Fogel, C.; Mäntele, W.; Paddock, M. L.; Okamura, M. Y. Biochemistry 1995, 34, 14722-12732.
26. Nabedryk, E.; Breton, J.; Okamura, M. Y.; Paddock, M. L. Biochemistry 1998, 37, 14457-14462.
27. Takahashi, E.; Wraight, C. A. Biochim. Biophys. Acta 1990, 1020, 107-111.
28. Takahashi, E.; Wraight. C. A. Biochemistry 1992, 31, 855-866.
29. Paddock, M. L.; Rongey, S. H.; McPherson, P. H.; Juth, A.; Feher, G.; Okamura, M. Y. Biochemistry 1994, 33, 734-745.
30. Grafton, A. K.; Wheeler, R. A. J. Phys. Chem. B 1999, 103, 5380-5387.
31. Alexov, E. G.; Gunner, M. R. Biochemistry 1999, 38, 8253-8270.
32. Baciou, L.; Sinning, I.; Sebban, P. Biochemistry 1991, 30, 9110-9116.
33. Cherepanov, D. A.; Bibikov, S. I.; Bibikova, M. V.; Bloch, D. A.; Drachev, L. A.; Gopta, O. A.; Oesterhelt, D.; Semenov, A. Y.; Mulkidjanian, A. Y. Biochim. Biophys. Acta 2000, 1459, 10-34.
34. Arata, H.; Parson, W. W. Biochim. Biophys. Acta 1981, 638, 201-209.
35. Arata, H.; Nishimura, M. Biochim. Biophys. Acta 1983, 726, 394-401.
36. Prince, R. C.; Dutton, P. L. Arch. Biochem. Biophys. 1976, 172, 329-334.
37. Maróti, P.; Wraight, C. W. Biochim. Biophys. Acta 1988, 934, 329-347.
38. Tandori, J.; Sebban, P.; Michel, H.; Baciou, L. Biochemistry 1999, 38, 13179-13187.
39. Tiede, D. M.; Vazquez, J.; Cordova, J.; Marone, P. A. Biochemistry 1996, 35, 10763-10775.
40. Graige, M. S.; Feber, G.; Okamura, M. Y. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 11679-11684.
41. Li, J.; Gilroy, D.; Tiede, D. M.; Gunner, M. R. Biochemistry 1998, 37, 2818-2829.
42. Tiede, D. M.; Utschig, L.; Hanson, D. K.; Gallo, D. M. Photosynth. Res. 1998, 55, 267-273.
43. Brudier, R.; Gerwert, K. Photosynth. Res. 1998, 55, 261-266.
44. Remy, A.; Gerwert, K. Nat. Struct. Biol. 2003, 10, 637-644.
45. Debus, R. J.; Feher, G.; Okamura, M. Y. Biochemistry 1986, 25, 2276-2287.
46. Brudler, R.; de Groot, H. J. M.; van Liemt, W. B. S.; Hoff, A. J.; Lugtenburg, J. L.; Gerwert, K. FEBS Lett. 1995, 370, 88-92.
47. Paddock, M. L.; McPherson, P. H.; Feher, G.; Okamura, M. Y. Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 6803-6807.
48. Paddock, M. L.; Feher, G.; Okamura, M. Y. Biochemistry 1995, 34, 15742-15750.
49. Taly, A.; Sebban, P.; Smith, J. C.; Ullmann, G. M. Biophys. J. 2003, 84, 2090-2098.
50. Breton, J.; Boullais, C.; Mioskowski, C.; Sebban, P.; Baciou, L.; Nabedryk, E. Biochemistry 2002, 41, 12921-12927.
51. Xu, Q.; Baciou, L.; Sebban, P.; Gunner, M. R. Biochemistry 2002, 41, 10021-10025.
52. McComb, J. C.; Stein, R. R.; Wraight, C. A. Biochim. Biophys. Acta 1990, 1015, 156-171.