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Volumn 33, Issue SUPPL. 2, 2005, Pages

TRAMPLE: The transmembrane protein labelling environment

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN; SIGNAL PEPTIDE;

EID: 23144452230     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki440     Document Type: Article
Times cited : (11)

References (11)
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    • (2003) Brief. Bioinform. , vol.4 , pp. 341-348
    • Casadio, R.1    Fariselli, P.2    Martelli, P.L.3
  • 2
    • 4243671284 scopus 로고    scopus 로고
    • A sequence-profile-based HMM for predicting and discriminating beta-barrel membrane proteins
    • Martelli,P.L., Fariselli,P., Krogh,A. and Casadio,R. (2002) A sequence-profile-based HMM for predicting and discriminating beta-barrel membrane proteins. Bioinformatics, 18, S46-S53.
    • (2002) Bioinformatics , vol.18
    • Martelli, P.L.1    Fariselli, P.2    Krogh, A.3    Casadio, R.4
  • 3
    • 0035078840 scopus 로고    scopus 로고
    • Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network based predictor
    • Jacoboni,I., Martelli,P.L., Fariselli,P., DePinto,V. and Casadio,R. (2001) Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network based predictor. Protein Sci., 10, 779-787.
    • (2001) Protein Sci. , vol.10 , pp. 779-787
    • Jacoboni, I.1    Martelli, P.L.2    Fariselli, P.3    DePinto, V.4    Casadio, R.5
  • 4
    • 0037569526 scopus 로고    scopus 로고
    • Fishing new proteins in the twilight zone of genomes: The test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria
    • Casadio,R., Fariselli,P., Finocchiaro,G. and Martelli,P.L. (2003) Fishing new proteins in the twilight zone of genomes: The test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Protein Sci., 12, 1158-1168.
    • (2003) Protein Sci. , vol.12 , pp. 1158-1168
    • Casadio, R.1    Fariselli, P.2    Finocchiaro, G.3    Martelli, P.L.4
  • 5
    • 0029978247 scopus 로고    scopus 로고
    • HTP: A neural network based method for predicting the topology of helical trasmembrane domains in proteins
    • Fariselli,P. and Casadio,R. (1996) HTP: A neural network based method for predicting the topology of helical trasmembrane domains in proteins. Comput. Appl. Biosci., 12, 41-48.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 41-48
    • Fariselli, P.1    Casadio, R.2
  • 6
    • 0037339488 scopus 로고    scopus 로고
    • MaxSubSeq: An algorithm for segment-length optimization. The case study of the transmembrane spanning segments
    • Fariselli,P., Finelli,M., Marchignoli,D., Martelli,P.L., Rossi,I. and Casadio,R. (2003) MaxSubSeq: An algorithm for segment-length optimization. The case study of the transmembrane spanning segments. Bioinformatics, 19, 500-505.
    • (2003) Bioinformatics , vol.19 , pp. 500-505
    • Fariselli, P.1    Finelli, M.2    Marchignoli, D.3    Martelli, P.L.4    Rossi, I.5    Casadio, R.6
  • 7
    • 0348143178 scopus 로고    scopus 로고
    • SPEPlip: The detection of signal peptide and lipoprotein cleavage sites
    • Fariselli,P., Finocchiaro,G. and Casadio,R. (2003) SPEPlip: The detection of signal peptide and lipoprotein cleavage sites. Bioinformatics, 18, 2498-2499.
    • (2003) Bioinformatics , vol.18 , pp. 2498-2499
    • Fariselli, P.1    Finocchiaro, G.2    Casadio, R.3
  • 8
    • 0034563423 scopus 로고    scopus 로고
    • Predictions of protein segments with the same amino acid sequence and different secondary structure: A benchmark for predictive methods
    • Jacoboni,I., Martelli,P.L., Fariselli,P., Compiani,M. and Casadio,R. (2000) Predictions of protein segments with the same amino acid sequence and different secondary structure: A benchmark for predictive methods. Proteins, 41, 535-544.
    • (2000) Proteins , vol.41 , pp. 535-544
    • Jacoboni, I.1    Martelli, P.L.2    Fariselli, P.3    Compiani, M.4    Casadio, R.5
  • 11
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    • Using evolutionary informations for both the query and the target improves fold recognition
    • Wallner,B., Fang,H., Ohlson,T., Frey-Skott,J. and Eloffson,A. (2004) Using evolutionary informations for both the query and the target improves fold recognition. Proteins, 54, 342-350.
    • (2004) Proteins , vol.54 , pp. 342-350
    • Wallner, B.1    Fang, H.2    Ohlson, T.3    Frey-Skott, J.4    Eloffson, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.