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Volumn 32, Issue 1, 2005, Pages 71-81

Protein energetic conformational analysis from NMR chemical shifts (PECAN) and its use in determining secondary structural elements

(5) Eghbalnia, Hamid R a,b Wang, Liya a,b Bahrami, Arash a,b Assadi, Amir b Markley, John L a,b

a National Magnetic Resonance Facility at Madison (United States)

b UNIVERSITY OF WISCONSIN MADISON (United States)

Author keywords

Chemical shifts; Protein secondary structure; Statistical decision; Statistical energy model

Indexed keywords

AMINO ACID; PROTEIN;

ACCURACY; AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; MATHEMATICAL MODEL; NUCLEAR MAGNETIC RESONANCE; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN DATABASE; PROTEIN SECONDARY STRUCTURE;

ALGORITHMS; AMINO ACID SEQUENCE; DATABASES, PROTEIN; MATHEMATICS; MODELS, THEORETICAL; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN STRUCTURE, SECONDARY; PROTEINS; SOFTWARE; THERMODYNAMICS;

CARYA ILLINOINENSIS;

EID: 23144437542 PISSN: 09252738 EISSN: None Source Type: Journal
DOI: 10.1007/s10858-005-5705-1 Document Type: Article

Times cited : (104)

References (39)

1
- 0042379959
- 10.1093/protein/gzg063 12915722
- M. Albrecht S.C. Tosatto T. Lengauer and G. Valle 2003 Protein Eng. 16 459-462 10.1093/protein/gzg063 12915722
- (2003) Protein Eng. , vol.16 , pp. 459-462
- Albrecht, M.¹ Tosatto, S.C.² Lengauer, T.³ Valle, G.⁴

2
- 0000913755
- J. Besag 1974 J. R. Stat. Soc. 36 192-236
- (1974) J. R. Stat. Soc. , vol.36 , pp. 192-236
- Besag, J.¹

3
- 0000084729
- 10.1021/ja00098a005
- D. Braun G. Wider and K. Wuthrich 1994 J. Am. Chem. Soc. 116 8466-8469 10.1021/ja00098a005
- (1994) J. Am. Chem. Soc. , vol.116 , pp. 8466-8469
- Braun, D.¹ Wider, G.² Wuthrich, K.³

4
- 0042622443
- 10.1093/nar/gkg626 12824310
- P. Carter C.A. Andersen and B. Rost 2003 Nucleic Acids Res. 31 3293-3295 10.1093/nar/gkg626 12824310
- (2003) Nucleic Acids Res. , vol.31 , pp. 3293-3295
- Carter, P.¹ Andersen, C.A.² Rost, B.³

5
- 0003688767
- American Mathematical Society Providence, RI
- N.N. Chentsov 1982 Statistical Decision Rules and Optimal Inference American Mathematical Society Providence, RI
- (1982) Statistical Decision Rules and Optimal Inference
- Chentsov, N.N.¹

6
- 0033003335
- 10.1023/A:1008392405740 10212987
- G. Cornilescu F. Delaglio and A. Bax 1999 J. Biomol. NMR 13 289-302 10.1023/A:1008392405740 10212987
- (1999) J. Biomol. NMR , vol.13 , pp. 289-302
- Cornilescu, G.¹ Delaglio, F.² Bax, A.³

7
- 0028205447
- 8019422
- U. Hobohm and C. Sander 1994 Protein Sci. 3 522-524 8019422
- (1994) Protein Sci. , vol.3 , pp. 522-524
- Hobohm, U.¹ Sander, C.²

8
- 0037304379
- 10.1110/ps.0222303 12538892
- L.H. Hung and R. Samudrala 2003 Protein Science 12 288-295 10.1110/ ps.0222303 12538892
- (2003) Protein Science , vol.12 , pp. 288-295
- Hung, L.H.¹ Samudrala, R.²

9
- 0033064395
- 10.1023/A:1008376710086 10212983
- M. Iwadate T. Asakura and M.P. Williamson 1999 J. Biomol. NMR 13 199-211 10.1023/A:1008376710086 10212983
- (1999) J. Biomol. NMR , vol.13 , pp. 199-211
- Iwadate, M.¹ Asakura, T.² Williamson, M.P.³

10
- 0000295764
- 10.1103/PhysRevA.39.6515 9901254
- H. Janyszek R. Mrugal-a 1989 Phys. Rev. A 39 651510.1103/ PhysRevA.39.6515 9901254
- (1989) Phys. Rev. A , vol.39 , pp. 6515
- Janyszek, H.¹ Mrugal-a, R.²

11
- 0142153209
- 10.1093/protein/gzg089 14560050
- F. Jiang 2003 Protein Eng. 16 651-657 10.1093/protein/gzg089 14560050
- (2003) Protein Eng. , vol.16 , pp. 651-657
- Jiang, F.¹

12
- 0020997912
- 6667333
- W. Kabsch and C. Sander 1983 Biopolymers 22 2577-2637 6667333
- (1983) Biopolymers , vol.22 , pp. 2577-2637
- Kabsch, W.¹ Sander, C.²

13
- 0030000912
- 8762138
- J. Kuszewski A.M. Gronenborn and G.M. Clore 1996 Protein Sci. 5 1067-1080 8762138
- (1996) Protein Sci. , vol.5 , pp. 1067-1080
- Kuszewski, J.¹ Gronenborn, A.M.² Clore, G.M.³

14
- 0037266712
- 10.1023/A:1021952400388 12566998
- D. Labudde D. Leitner M. Kruger and H. Oschkinat 2003 J. Biomol. NMR 25 41-53 10.1023/A:1021952400388 12566998
- (2003) J. Biomol. NMR , vol.25 , pp. 41-53
- Labudde, D.¹ Leitner, D.² Kruger, M.³ Oschkinat, H.⁴

15
- 0028434564
- 10.1007/BF00179345 8019141
- H. Le and E. Oldfield 1994 J. Biomol. NMR 4 341-348 10.1007/BF00179345 8019141
- (1994) J. Biomol. NMR , vol.4 , pp. 341-348
- Le, H.¹ Oldfield, E.²

16
- 0019588920
- 6945585
- A.M. Lesk and G.D. Rose 1981 Proc. Natl. Acad. Sci. USA 78 4304-4308 6945585
- (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 4304-4308
- Lesk, A.M.¹ Rose, G.D.²

17
- 0030777763
- 10.1093/protein/10.7.771 9342143
- J.M. Levin 1997 Protein Eng. 10 771-776 10.1093/protein/10.7.771 9342143
- (1997) Protein Eng. , vol.10 , pp. 771-776
- Levin, J.M.¹

18
- 0001455222
- 10.1006/jmrb.1995.0016
- P. Luginbuhl T. Szyperski and K. Wuthrich 1995 J. Magn. Reson. B 109 229-233 10.1006/jmrb.1995.0016
- (1995) J. Magn. Reson. B , vol.109 , pp. 229-233
- Luginbuhl, P.¹ Szyperski, T.² Wuthrich, K.³

19
- 0031063339
- 10.1023/A:1018602220061 9090130
- J.A. Lukin A.P. Gove S.N. Talukdar and C. Ho 1997 J. Biomol. NMR 9 151-166 10.1023/A:1018602220061 9090130
- (1997) J. Biomol. NMR , vol.9 , pp. 151-166
- Lukin, J.A.¹ Gove, A.P.² Talukdar, S.N.³ Ho, C.⁴

20
- 0014202630
- 10.1016/0022-2836(67)90349-X 6033611
- J.L. Markley D.H. Meadows and O. Jardetzky 1967 J. Mol. Biol. 27 25-35 10.1016/0022-2836(67)90349-X 6033611
- (1967) J. Mol. Biol. , vol.27 , pp. 25-35
- Markley, J.L.¹ Meadows, D.H.² Jardetzky, O.³

21
- 0030914617
- 10.1016/S0959-440X(97)80025-5 9094335
- J. Moult 1997 Curr. Opin. Struct. Biol. 7 194-199 10.1016/ S0959-440X(97)80025-5 9094335
- (1997) Curr. Opin. Struct. Biol. , vol.7 , pp. 194-199
- Moult, J.¹

22
- 0033056948
- 10.1038/10728 10404226
- T. Przytycka R. Aurora and G.D. Rose 1999 Nat. Struct. Biol. 6 672-682 10.1038/10728 10404226
- (1999) Nat. Struct. Biol. , vol.6 , pp. 672-682
- Przytycka, T.¹ Aurora, R.² Rose, G.D.³

23
- 0001006731
- 10.1021/ja00041a056
- M.D. Reiley V. Thanabal and D.O. Omecinsky 1992 J. Am. Chem. Soc. 114 6251-6252 10.1021/ja00041a056
- (1992) J. Am. Chem. Soc. , vol.114 , pp. 6251-6252
- Reiley, M.D.¹ Thanabal, V.² Omecinsky, D.O.³

24
- 0029984070
- 8697234
- S.K. Riis and A. Krogh 1996 J. Comput. Biol. 3 163-183 8697234
- (1996) J. Comput. Biol. , vol.3 , pp. 163-183
- Riis, S.K.¹ Krogh, A.²

25
- 11944275906
- 10.1103/RevModPhys.67.605
- G. Ruppeiner 1995 Rev. Mod. Phys. 67 60510.1103/RevModPhys.67.605
- (1995) Rev. Mod. Phys. , vol.67 , pp. 605
- Ruppeiner, G.¹

26
- 0028965118
- 10.1006/jmbi.1994.0116 7897654
- A.A. Salamov and V.V. Solovyev 1995 J. Mol. Biol. 247 11-15 10.1006/ jmbi.1994.0116 7897654
- (1995) J. Mol. Biol. , vol.247 , pp. 11-15
- Salamov, A.A.¹ Solovyev, V.V.²

27
- 0026674246
- 10.1016/0022-2836(92)90892-N 1404357
- S. Salzberg and S. Cost 1992 J. Mol. Biol. 227 371-374 10.1016/ 0022-2836(92)90892-N 1404357
- (1992) J. Mol. Biol. , vol.227 , pp. 371-374
- Salzberg, S.¹ Cost, S.²

28
- 0033794319
- 10.1023/A:1008386816521 11061227
- S. Schwarzinger G.J. Kroon T.R. Foss P.E. Wright and H.J. Dyson 2000 J. Biomol. NMR 18 43-48 10.1023/A:1008386816521 11061227
- (2000) J. Biomol. NMR , vol.18 , pp. 43-48
- Schwarzinger, S.¹ Kroon, G.J.² Foss, T.R.³ Wright, P.E.⁴ Dyson, H.J.⁵

29
- 0037304366
- 12547802
- A.B. Sibley M. Cosman and V.V. Krishnan 2003 Biophys. J. 84 1223-1227 12547802
- (2003) Biophys. J. , vol.84 , pp. 1223-1227
- Sibley, A.B.¹ Cosman, M.² Krishnan, V.V.³

30
- 0003443397
- Chapman and Hall New York, NY
- B.W. Silverman 1986 Density Estimation for Statistics and Data Analysis Chapman and Hall New York, NY
- (1986) Density Estimation for Statistics and Data Analysis
- Silverman, B.W.¹

31
- 0347610773
- 10.1021/ja00014a071
- S. Spera and A. Bax 1991 J. Am. Chem. Soc. 113 5490-5492 10.1021/ ja00014a071
- (1991) J. Am. Chem. Soc. , vol.113 , pp. 5490-5492
- Spera, S.¹ Bax, A.²

32
- 0000658710
- F. Spitzer 1971 Am. Math. Mon. 78 142-154
- (1971) Am. Math. Mon. , vol.78 , pp. 142-154
- Spitzer, F.¹

33
- 0014123731
- 10.1021/bi00861a032 6055199
- H. Sternlicht and D. Wilson 1967 Biochemistry 6 2881-2892 10.1021/ bi00861a032 6055199
- (1967) Biochemistry , vol.6 , pp. 2881-2892
- Sternlicht, H.¹ Wilson, D.²

34
- 0036129107
- 10.1110/ps.3180102 11910028
- Y. Wang and O. Jardetzky 2002 Protein Sci. 11 852-861 10.1110/ps.3180102 11910028
- (2002) Protein Sci. , vol.11 , pp. 852-861
- Wang, Y.¹ Jardetzky, O.²

35
- 0034923356
- 11460554
- D.S. Wishart and D.A. Case 2001 Methods Enzymol. 338 3-34 11460554
- (2001) Methods Enzymol. , vol.338 , pp. 3-34
- Wishart, D.S.¹ Case, D.A.²

36
- 0028393784
- 10.1007/BF00175245 8019132
- D.S. Wishart and B.D. Sykes 1994 J. Biomol. NMR 4 171-180 10.1007/ BF00175245 8019132
- (1994) J. Biomol. NMR , vol.4 , pp. 171-180
- Wishart, D.S.¹ Sykes, B.D.²

37
- 0026410969
- 10.1016/0022-2836(91)90214-Q 1960729
- D.S. Wishart B.D. Sykes and F.M. Richards 1991 J. Mol. Biol. 222 311-333 10.1016/0022-2836(91)90214-Q 1960729
- (1991) J. Mol. Biol. , vol.222 , pp. 311-333
- Wishart, D.S.¹ Sykes, B.D.² Richards, F.M.³

38
- 0027199670
- 10.1006/jmbi.1993.1464 8371270
- T.M. Yi and E.S. Lander 1993 J. Mol. Biol. 232 1117-1129 10.1006/ jmbi.1993.1464 8371270
- (1993) J. Mol. Biol. , vol.232 , pp. 1117-1129
- Yi, T.M.¹ Lander, E.S.²

39
- 0026771388
- 10.1016/0022-2836(92)90104-R 1613789
- X. Zhang J.P. Mesirov and D.L. Waltz 1992 J. Mol. Biol. 225 1049-1063 10.1016/0022-2836(92)90104-R 1613789
- (1992) J. Mol. Biol. , vol.225 , pp. 1049-1063
- Zhang, X.¹ Mesirov, J.P.² Waltz, D.L.³

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