Automated probabilistic method for assigning backbone resonances of (13C,15N)-labeled proteins

Journal of Biomolecular NMR

Volumn 9, Issue 2, 1997, Pages 151-166

  Lukin, Jonathan A ^a   Gove, Andrew P ^b   Talukdar, Sarosh N ^b   Ho, Chien ^a  

^a CARNEGIE MELLON UNIVERSITY   (United States)

^b CARNEGIE MELLON UNIVERSITY   (United States)

Author keywords

Automated polypeptide resonance assignment; Three dimensional NMR

Indexed keywords

AMINO ACID; BACTERIAL PROTEIN; CARBON; CARRIER PROTEIN; GLUTAMINE; GLUTAMINE TRANSPORT PROTEINS; MEMBRANE PROTEIN; METHYL ACCEPTING CHEMOTAXIS PROTEINS; METHYL-ACCEPTING CHEMOTAXIS PROTEINS; NITROGEN; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; AUTOMATION; BAYES THEOREM; CHEMISTRY; INFORMATION SYSTEM; METABOLISM; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROBABILITY; PROTEIN SECONDARY STRUCTURE;

AMINO ACID SEQUENCE; AMINO ACIDS; AUTOMATION; BACTERIAL PROTEINS; BAYES THEOREM; CARBON ISOTOPES; CARRIER PROTEINS; GLUTAMINE; INFORMATION SYSTEMS; MAGNETIC RESONANCE SPECTROSCOPY; MEMBRANE PROTEINS; NITROGEN ISOTOPES; PROBABILITY; PROTEIN STRUCTURE, SECONDARY; PROTEINS;

EID: 0031063339     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1018602220061     Document Type: Article

References (48)

1. Bax, A., Ikura, M., Kay, L.E., Torchia, D.A. and Tschudin, T. (1990) J. Magn. Reson., 86, 304-318.
2. Bax, A. and Grzesiek, S. (1993) Acc. Chem. Res., 26, 131-138.
3. Cieslar, C., Clore, G.M. and Gronenborn, A.M. (1988) J. Magn. Reson., 80, 119-127.
4. Clore, G.M. and Gronenborn, A.M. (1991) Science, 252, 1390-1399.
5. Clubb, R.T., Thanabal, V. and Wagner, G. (1992a) J. Biomol. NMR, 2, 203-210.
6. Clubb, R.T., Thanabal, V. and Wagner, G. (1992b) J. Magn. Reson., 97, 213-217.
7. Clubb, R.T. and Wagner, G. (1992) J. Biomol. NMR, 2, 389-394.
8. Dijkstra, K., Kroon, G.J.A., Van Nuland, N.A.J. and Scheek, R.M. (1994) J. Magn. Reson., A107, 102-105.
9. Eads, C.D. and Kuntz, I.D. (1989) J. Magn. Reson., 82, 467-482.
10. Eccles, C., Güntert, P., Billeter, M. and Wüthrich, K. (1991) J. Biomol. NMR, 97, 111-130.
11. Friedrichs, M.S., Mueller, L. and Wittekind, M. (1994) J. Biomol. NMR, 4, 703-726.
12. Grzesiek, S. and Bax, A. (1992a) J. Magn. Reson., 96, 432-440.
13. Grzesiek, S. and Bax, A. (1992b) J. Am. Chem. Soc., 114, 6291-6293.
14. Grzesiek, S. and Bax, A. (1992c) J. Magn. Reson., 99, 201-207.
15. Grzesiek, S. and Bax, A. (1993) J. Biomol. NMR, 3, 185-204.
16. Hing, A.W, Tjandra, N., Cottam, P.F., Schaeffer, J. and Ho, C. (1994) Biochemistry, 33, 8651-8661.
17. Hsiao, C.-D. (1993) Ph.D. Thesis, University of Pittsburgh, Pittsburgh, PA, U.S.A.
18. Ikura, M., Kay, L.E. and Bax, A. (1990) Biochemistry, 29, 4659-4667.
19. Kirkpatrick, S., Gelatt Jr., C.D. and Vecchi, M.P. (1983) Science, 220, 671-680.
20. Kleywegt, G.J., Boelens, R., Cox, M., Llinás, M. and Kaptein, R. (1991) J. Biomol. NMR, 1, 23-47.
21. Leopold, M.F., Urbauer, J.L. and Wand, A.J. (1994) Mol. Biotechnol., 2, 61-93.
22. McEvoy, M.M., Zhou, H., Roth, A.F., Lowry, D.F., Morrison, T.B., Kay, L.E. and Dahlquist, F.W. (1995) Biochemistry, 34, 13871-13880.
23. McEvoy, M.M., Muhandiram, D.R., Kay, L.E. and Dahlquist, F.W. (1996) Biochemistry, 35, 5633-5640.
24. Meadows, R.P., Olejniczak, E.J. and Fesik, S.W. (1994) J. Biomol. NMR, 4, 79-96.
25. Metropolis, N., Rosenbluth, A.W., Rosenbluth, M.N., Teller, A.H. and Teller, E. (1953) J. Chem. Phys., 21, 1087-1092.
26. Morelle, M., Brutscher, B., Simorre, J.-P. and Marion, D. (1995) J. Biomol. NMR, 5, 154-160.
27. Olejniczak, E.T., Xu, R.X., Petros, A.M. and Fesik, S.W. (1992) J. Magn. Reson., 100, 444-450.
28. Olson, J.B. and Markley, J.L. (1994) J. Biomol. NMR, 4, 385-410.
29. Powers, R., Gronenborn, A.M., Clore, G.M. and Bax, A. (1991) J. Magn. Reson., 94, 209-213.
30. Press, S.J. (1989) Bayesian Statistics: Principles, Models, and Applications, Wiley, New York, NY, U.S.A.
31. Press, W.H., Teukolsky, S.A., Vetterling, W.T. and Flannery, B.P. (1992) Numerical Recipes in Fortran, 2nd ed., Cambridge University Press, Cambridge, U.K., pp. 436-438.
32. Seavey, B.R., Farr, E.A., Westler, W.M. and Markley, J.L. (1991) J. Biomol. NMR, 1, 217-236.
33. Shen, Q., Simplaceanu, V., Cottam, P.F. and Ho, C. (1989a) J. Mol. Biol., 210, 849-857.
34. Shen, Q., Simplaceanu, V., Cottam, P.F., Wu, J.-L., Hong, J.-S. and Ho, C. (1989b) J. Mol. Biol., 210, 859-867.
35. Spera, S. and Bax, A. (1991) J. Am. Chem. Soc., 113, 5490-5492.
36. Tjandra, N., Simplaceanu, Y., Cottam, P.F. and Ho, C. (1992) J. Biomol. NMR, 2, 149-160.
37. Tjandra, N. (1993) Ph.D. Thesis, Carnegie Mellon University, Pittsburgh, PA, U.S.A.
38. Tjandra, N., Kuboniwa, H., Ren, H. and Bax, A. (1995) Eur. J. Biochem., 230, 1014-1024.
39. Van de Ven, F.J.M. (1990) J. Magn. Reson., 86, 633-644.
40. Weber, P.L., Malikayil, J.A. and Mueller, L. (1988) J. Magn. Reson., 82, 419-426.
41. Wishart, D.S., Sykes, B.D. and Richards, F.M. (1991) J. Mol. Biol., 222, 311-333.
42. Wishart, D.S. and Sykes, B.D. (1994) Methods Enzymol., 239, 363-392.
43. Wishart, D.S., Bigham, C.G., Yao, J., Abildgaard, F., Dyson, H.J., Oldfield, E., Markley, J.L. and Sykes, B.D. (1995) J. Biomol. NMR, 6, 135-140.
44. Wittekind, M. and Mueller, L. (1993) J. Magn. Reson., B101, 201-205.
45. Xu, J., Straus, S.K., Sanctuary, B.C. and Trimble, L. (1994) J. Magn. Reson., B103, 53-58.
46. Yu, J., Tjandra, N., Simplaceanu, V., Cottam, P.F., Lukin, J.A. and Ho, C. (1995) Biophys. J., 68, 420.
47. Yu, J., Simplaceanu, V., Tjandra, N.L., Cottam, P.F., Lukin, J.A. and Ho, C. (1997) J. Biomol. NMR, 9, 167-180.
48. Zimmerman, D.E. and Montelione, G.T. (1995) Curr. Opin. Struct. Biol., 5, 664-673.