Crystal structure of the DNA decamer d(CGCAATTGCG) complexed with the minor groove binding drug netropsin

Biochemistry

Volumn 36, Issue 16, 1997, Pages 4792-4799

  Nunn, Christine M ^a   Garman, Elspeth ^b   Neidle, Stephen ^a  

^a INSTITUTE OF CANCER RESEARCH   (United Kingdom)

^b UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CONGOCIDINE; DNA; DNA B;

ARTICLE; BASE PAIRING; CRYSTAL STRUCTURE; DNA DRUG COMPLEX; HYDROGEN BOND; PRIORITY JOURNAL;

ANTI-BACTERIAL AGENTS; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; DNA; MODELS, MOLECULAR; NETROPSIN; PROTEIN CONFORMATION; SOFTWARE;

EID: 0030936234     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9628228     Document Type: Article

References (28)

1. Abu-Daya, A., Brown, P. M., & Fox, K. R. (1995) Nucleic Acids Res. 23, 3385-3392.
2. Allen, F. H., Bellard, S., Brice, M. D., Cartwright, B. A., Doubleday, A., Higgs, H., Hemmelink, T., Hummelink-Peters, B. G., Kennard, O., Motherwell, W. D. S., Rodgers, J. R., & Watson, D. G. (1979) Acta Crystallogr. B35, 2331-2339.
3. Balendiran, K., Rao, S. T., Sekharudu, C. Y., Zon, G., & Sundaralingam, M. (1995) Acta Crystallogr. D51, 190-198.
4. Berman, H. M., Neidle, S., Zimmer, C., & Thrum, H. (1979) Biochim. Biophys. Acta 561, 124-131.
5. Berman, H. M., Olson, W. K., Beveridge, D. L., Westbrook, J., Gelbin, A., Demeny, T., Hsieh, S.-H., Srinivasan, A. R., & Schneider, B. (1992) Biophys. J. 63, 751-759.
6. Brünger, A. T., Kuriyan, J., & Karplus, M. (1987) Science 235, 458-460.
7. Coll, M., Aymami, J., van der Marel, G. A., van Boom, J. H., Rich, A., & Wang, A. H.-J. (1989) Biochemistry 28, 310-320.
8. Dickerson, R. E. (1992) Methods Enzymol. 211, 67-111.
9. Fregeau, N. L., Wang, Y., Pon, R. T., Wylie, W. A., & Lown, J. W. (1995) J. Am. Chem. Soc. 117, 8917-8925.
10. Goodsell, D. S., Kopka, M. L., & Dickerson, R. E. (1995) Biochemistry 34, 4983-4993.
11. Jones, T. A., Zou, J.-Y., Cowan, S. W., & Kjeldgaard, M. (1991) Acta Crystallogr. A47, 110-119.
12. Kabsch, W. (1993) J. Appl. Crystallogr. 26, 795-800.
13. Kopka, M. L., Fratini, A. V., Drew, H. R., & Dickerson, R. E. (1983) J. Mol. Biol. 163, 129-146.
14. Kopka, M. L., Yoon, C., Goodsell, D., Pjura, P., & Dickerson, R. E. (1985) J. Mol. Biol. 183, 553-563.
15. Kumar, S., Bathini, Y., Joseph, T., Pon, R. T., & Lown, J. W. (1991) J. Biomol. Struct. Dyn. 9, 1-21.
16. Kumar, S., Joseph, T., Singh, M. P., Bathini, Y., & Lown, J. W. (1992) J. Biomol. Struct. Dyn. 9, 853-880.
17. Lown, J. W. (1995) Drug Dev. Res. 34, 145-183.
18. Nicholls, A., Sharp, K., & Honig, B. (1991) Proteins 11, 281-296.
19. Parkinson, G., Vojtechovsky, J., Clowney, L., Brünger, A. T., & Berman, H. M. (1996) Acta Crystallogr. D52, 57-64.
20. Patel, D. J. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 6424-6428.
21. Singh, M. P., Kumar, S., Joseph, T., Pon, R. T., & Lown, J. W. (1992) Biochemistry 31, 6453-6461.
22. Spink, N., Nunn, C. M., Vojtechovsky, J., Berman, H. M., & Neidle, S. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 10767-10771.
23. Sriram, M., van der Marel, G. A., Roelen, H. L. P. F., van Boom, J. H., & Wang, A. H.-J. (1992) Biochemistry 31, 11823-11834.
24. Stewart, J. P. P. (1990) Mopac 6.0 (QCPE), Quantum Chemistry Program Exchange, Indiana University, Bloomington, IN 47405.
25. Tabernero, L., Verdaguer, N., Coll, M., Fita, I., van der Marel, G. A., van Boom, J. H., Rich, A., & Aymami, J. (1993) Biochemistry 32, 8403-8410.
26. Van Meervelt, L., Vlieghe, D., Dautant, A., Gallois, B., Precigoux, G., & Kennard, O. (1995) Nature 374, 742-744.
27. Vlieghe, D., Van Meervelt, L., Dautant, A., Gallois, B., Precigoux, G., & Kennard, O. (1996) Acta Crystallogr. D52, 766-775.
28. Vlieghe, D., Van Meervelt, L., Dautant, A., Gallois, B., Precigoux, G., & Kennard, O. (1996) Science 273, 1702-1705.