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Volumn 22, Issue 3, 2005, Pages 177-189

Sequence and hydropathy profile analysis of two classes of secondary transporters

Author keywords

BLAST searches; Distant relationships; Hydropathy profile analysis; Low complexity filtering; Secondary transporters; Structural classes

Indexed keywords

AMINO ACID; AMINO ACID TRANSPORTER; ASPARTIC ACID; BINDING PROTEIN; DICARBOXYLIC ACID; GLUTAMATE TRANSPORTER; GLUTAMIC ACID; HYBRID PROTEIN; MEMBRANE PROTEIN;

EID: 22544475617     PISSN: 09687688     EISSN: None     Source Type: Journal    
DOI: 10.1080/09687860500063324     Document Type: Article
Times cited : (14)

References (29)
  • 1
    • 0034604396 scopus 로고    scopus 로고
    • Microbial genome analyses: Comparative transport capabilities in eighteen prokaryotes
    • Paulsen IT, Nguyen L, Sliwinski MK, Rabus R, Saier MH Jr. Microbial genome analyses: comparative transport capabilities in eighteen prokaryotes. J Mol Biol 2000;301:75-100.
    • (2000) J Mol Biol , vol.301 , pp. 75-100
    • Paulsen, I.T.1    Nguyen, L.2    Sliwinski, M.K.3    Rabus, R.4    Saier Jr., M.H.5
  • 2
    • 0343603660 scopus 로고    scopus 로고
    • A functional-phylogenetic classification system for transmembrane solute transporters
    • Saier MH Jr. A functional-phylogenetic classification system for transmembrane solute transporters. Microbiol Mol Biol Rev 2000;64:354-411.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 354-411
    • Saier Jr., M.H.1
  • 4
    • 0041489951 scopus 로고    scopus 로고
    • Structure and mechanism of the glycerol-3-P transporter of Escherichia coli
    • Huang Y, Lemieux MJ, Song J, Auer M, Wang D-N. Structure and mechanism of the glycerol-3-P transporter of Escherichia coli. Science 2003;301:616-620.
    • (2003) Science , vol.301 , pp. 616-620
    • Huang, Y.1    Lemieux, M.J.2    Song, J.3    Auer, M.4    Wang, D.-N.5
  • 5
    • 0037057652 scopus 로고    scopus 로고
    • Crystal structure of bacterial multidrug efflux transporter AcrB
    • Murakami S, Nakashima R, Yamashita E, Yamaguchi A. Crystal structure of bacterial multidrug efflux transporter AcrB. Nature 2003;419:587-593.
    • (2003) Nature , vol.419 , pp. 587-593
    • Murakami, S.1    Nakashima, R.2    Yamashita, E.3    Yamaguchi, A.4
  • 7
    • 7244254186 scopus 로고    scopus 로고
    • Structure of a glutamate transporter homologue from Pyrococcus Horikoshii
    • Yernool D, Boudker O, Jin Y, Gouaux E. Structure of a glutamate transporter homologue from Pyrococcus Horikoshii. Nature 2004;431:811-818.
    • (2004) Nature , vol.431 , pp. 811-818
    • Yernool, D.1    Boudker, O.2    Jin, Y.3    Gouaux, E.4
  • 8
    • 0035448934 scopus 로고    scopus 로고
    • Glutamate transporters combine transporter- and channel-like features
    • Slotboom DJ, Konings WN, Lolkema JS. Glutamate transporters combine transporter- and channel-like features. TIBS 2001;26:534-539.
    • (2001) TIBS , vol.26 , pp. 534-539
    • Slotboom, D.J.1    Konings, W.N.2    Lolkema, J.S.3
  • 9
    • 0037055984 scopus 로고    scopus 로고
    • The dual-function glutamate transporters: Structure and molecular characterisation of the substrate-binding sites
    • Kanner B, Borre L. The dual-function glutamate transporters: Structure and molecular characterisation of the substrate-binding sites. Biochim Biophys Acta 2002;1555: 92-95.
    • (2002) Biochim Biophys Acta , vol.1555 , pp. 92-95
    • Kanner, B.1    Borre, L.2
  • 10
    • 0035808450 scopus 로고    scopus 로고
    • Helix packing of functionally important regions of the cardiac Na(+)-Ca(2+) exchanger
    • Qiu Z, Nicoll DA, Philipson KD. Helix packing of functionally important regions of the cardiac Na(+)-Ca(2+) exchanger. J Biol Chem 2001;276:194-199.
    • (2001) J Biol Chem , vol.276 , pp. 194-199
    • Qiu, Z.1    Nicoll, D.A.2    Philipson, K.D.3
  • 13
    • 0034976744 scopus 로고    scopus 로고
    • Cysteine mutagenesis reveals novel structure-function features within the predicted third extracellular loop of the type IIa Na(+)/P(i) cotransporter
    • Lambert G, Forster IC, Stange G, Kohler K, Biber J, Murer H. Cysteine mutagenesis reveals novel structure-function features within the predicted third extracellular loop of the type IIa Na(+)/P(i) cotransporter. J Gen Physiol 2001;117: 533-546.
    • (2001) J Gen Physiol , vol.117 , pp. 533-546
    • Lambert, G.1    Forster, I.C.2    Stange, G.3    Kohler, K.4    Biber, J.5    Murer, H.6
  • 14
    • 3843066770 scopus 로고    scopus 로고
    • +-citrate transporter CitS of Klebsiella pneumoniae
    • +-citrate transporter CitS of Klebsiella pneumoniae. J Biol Chem 2004;279:31113-31120.
    • (2004) J Biol Chem , vol.279 , pp. 31113-31120
    • Sobczak, I.1    Lolkema, J.S.2
  • 15
    • 0031920140 scopus 로고    scopus 로고
    • Estimation of structural similarity of membrane proteins by hydropathy profile alignment
    • Lolkema JS, Slotboom DJ. Estimation of structural similarity of membrane proteins by hydropathy profile alignment. Mol Membr Biol 1998;15:33-42.
    • (1998) Mol Membr Biol , vol.15 , pp. 33-42
    • Lolkema, J.S.1    Slotboom, D.J.2
  • 16
    • 0037432531 scopus 로고    scopus 로고
    • Classification of 29 families of secondary transport proteins into a single structural class using hydropathy profile analysis
    • Lolkema JS, Slotboom DJ. Classification of 29 families of secondary transport proteins into a single structural class using hydropathy profile analysis. J Mol Biol 2003;327:901-909.
    • (2003) J Mol Biol , vol.327 , pp. 901-909
    • Lolkema, J.S.1    Slotboom, D.J.2
  • 18
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ, CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 21
    • 0032436625 scopus 로고    scopus 로고
    • +-coupled serine transporter from Escherichia coli and characteristics of the transporter
    • +-coupled serine transporter from Escherichia coli and characteristics of the transporter. J Bacteriol 1998;180:6749-6752.
    • (1998) J Bacteriol , vol.180 , pp. 6749-6752
    • Ogawa, W.1    Kim, Y.M.2    Mizushima, T.3    Tsuchiya, T.4
  • 22
    • 0030614959 scopus 로고    scopus 로고
    • Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • Nielsen H, Engelbrecht J, Brunak S, von Heijne G. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 1997; 10:1-6.
    • (1997) Protein Eng , vol.10 , pp. 1-6
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    Von Heijne, G.4
  • 25
    • 0033374883 scopus 로고    scopus 로고
    • TRAP transporters: An ancient family of extracytoplasmic solute-receptor-dependent secondary active transporters
    • Rabus R, Jack DL, Kelly DJ, Saier MH Jr. TRAP transporters: an ancient family of extracytoplasmic solute-receptor-dependent secondary active transporters. Microbiology 1999;145:3431-3445.
    • (1999) Microbiology , vol.145 , pp. 3431-3445
    • Rabus, R.1    Jack, D.L.2    Kelly, D.J.3    Saier Jr., M.H.4
  • 26
    • 0034889137 scopus 로고    scopus 로고
    • The tripartite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea
    • Kelly DJ, Thomas GH. The tripartite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea. FEMS Microbiol Rev 2001;25:405-424.
    • (2001) FEMS Microbiol Rev , vol.25 , pp. 405-424
    • Kelly, D.J.1    Thomas, G.H.2
  • 27
    • 0036774002 scopus 로고    scopus 로고
    • ABC transporters: One, two or four extracytoplasmic substrate-binding sites?
    • van der Heide T, Poolman B. ABC transporters: One, two or four extracytoplasmic substrate-binding sites? EMBO Rep 2002;3:938-943.
    • (2002) EMBO Rep , vol.3 , pp. 938-943
    • Van Der Heide, T.1    Poolman, B.2
  • 28
    • 0035082495 scopus 로고    scopus 로고
    • Identification of related proteins with weak sequence identity using secondary structure information
    • Geourjon C, Combet C, Blanchet C, Deleage G. Identification of related proteins with weak sequence identity using secondary structure information. Protein Sci 2001;10:788-797.
    • (2001) Protein Sci , vol.10 , pp. 788-797
    • Geourjon, C.1    Combet, C.2    Blanchet, C.3    Deleage, G.4
  • 29
    • 0036177476 scopus 로고    scopus 로고
    • Improved detection of homologous membrane proteins by inclusion of information from topology predictions
    • Hedman M, Deloof H, von Heijne G, Elofsson A. Improved detection of homologous membrane proteins by inclusion of information from topology predictions. Protein Sci 2002;11:652-658.
    • (2002) Protein Sci , vol.11 , pp. 652-658
    • Hedman, M.1    Deloof, H.2    Von Heijne, G.3    Elofsson, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.