Representation of individual gene expression in completely pooled mRNA samples

Bioscience, Biotechnology and Biochemistry

Volumn 69, Issue 6, 2005, Pages 1098-1103

  Glass, Änne ^a   Henning, Jeannette ^a   Karopka, Thomas ^a   Scheel, Thomas ^a   Bansemer, Sven ^a   Koczan, Dirk ^a   Gierl, Lothar ^a   Rolfs, Arndt ^a   Gimsa, Ulrike ^a  

^a UNIVERSITY OF ROSTOCK   (Germany)

Author keywords

Complete pooling; Gene expression; Oligonucleotide microarrays

Indexed keywords

BRAIN; CONSTRAINT THEORY; RNA;

GENE EXPRESSION; MICROARRAY EXPERIMENTS; POOLING DESIGNS; RAT BRAIN;

GENES;

MESSENGER RNA;

ANIMAL; ARTICLE; CHEMISTRY; DNA MICROARRAY; GENE EXPRESSION; MALE; METHODOLOGY; RAT; REPRODUCIBILITY; WISTAR RAT;

ANIMALS; GENE EXPRESSION; MALE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RATS; RATS, WISTAR; REPRODUCIBILITY OF RESULTS; RESEARCH DESIGN; RNA, MESSENGER;

EID: 22444449738     PISSN: 09168451     EISSN: None     Source Type: Journal    
DOI: 10.1271/bbb.69.1098     Document Type: Article

References (8)

1. Kerr, M. K., Design considerations for efficient and effective microarray studies. Biometrics, 59, 822-828 (2003).
2. Kendziorski, C. M., Zhang, Y., Lan, H., and Attie, A. D., The efficiency of pooling mRNA in microarray experiments. Biostatistics, 4, 465-477 (2003).
3. Anderssen, R. S., Wu, Y., Dolferus, R., and Saunders, I., An a posteriori strategy for enhancing gene discovery in anonymous cDNA microarray experiments. Bioinformatics, 20, 1721-1727 (2004).
4. Agrawal, D., Chen, T., Irby, R., Quackenbush, J., Chambers, A. F., Szabo, M., Cantor, A., Coppola, D., and Yeatman, T. J., Osteopontin identified as lead marker of colon cancer progression, using pooled sample expression profiling. J. Natl. Cancer Inst., 94, 513-521 (2002).
5. Lee, J. K., Analysis issues for gene expression array data. Clin. Chem., 47, 1350-1352 (2001).
6. Nunez-Garcia, J., Mersinias, V., Cho, K. H., Smith, C. P., and Wolkenhauer, O., The statistical distribution of the intensity of pixels within spots of DNA microarrays: What is the appropriate single-value representative? Appl. Bioinformatics, 2, 229-239 (2003).
7. Peng, X., Wood, C. L., Blalock, E. M., Chen, K. C., Landfield, P. W., and Stromberg, A. J., Statistical implications of pooling RNA samples for microarray experiments. BMC Bioinformatics, 4, 26 (2003).
8. Marshall, E., Getting the noise out of gene arrays. Science, 306, 630-631 (2004).