An a posteriori strategy for enhancing gene discovery in anonymous cDNA microarray experiments

Bioinformatics

Volumn 20, Issue 11, 2004, Pages 1721-1727

  Anderssen, R S ^a   Wu, Y ^a   Dolferus, R ^a   Saunders, I ^a  

^a CSIRO   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

ARTICLE; CONTROL STRATEGY; DNA HYBRIDIZATION; DNA MICROARRAY; FLUORESCENCE ANALYSIS; GENE ACTIVITY; GENE CONSTRUCT; GENE EXPRESSION; GENE IDENTIFICATION; GENE LIBRARY; GENE POOL; GENE SEQUENCE; GENETIC ANALYSIS; MOLECULAR CLONING; NONHUMAN; PLANT GENETICS; PLANT TISSUE; PRIORITY JOURNAL; RNA PROBE; VALIDATION PROCESS;

EID: 4444321454     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth152     Document Type: Article

References (13)

1. Anderson,M.L.M. and Young,B.D. (1985) Quantitative filter hybridization. In Hames,B.D. and Higgins,S.J. (eds), Nucleic Acid Hybridization - A Practical Approach. IRL Press Limited, Oxford and Washington, DC, pp. 73-109.
2. Bonaldo,M.F., Lennon,G. and Soares,M.B. (1996) Normalization and subtraction: two approaches to facilitate gene discovery. Genomics Res., 6, 791-806.
3. Bunge,J. and Fitzpatrick,M. (1993) Estimating the number of species: a review. J. Amer. Stats. Assoc., 88, 364-373.
4. Domazet-Loso,T. and Tautz,D. (2003) An evolutionary analysis of orphan genes in Drosophila. Genome Res., 13, 2213-2219.
5. Goldberg,R.B., Hoschek,G., Kamalay,J.C. and Timberlake,W.E. (1978) Sequence complexity of nuclear and polysomal RNA in leaves of the tobacco plant. Cell, 14, 23-131.
6. Good,P. (2000) Permutation Tests: A Practical Guide to Resampling Methods for Testing Hypotheses, 2nd Edn. Springer, New York.
7. Herwig,R. et al. (2002) Construction of a 'unigene' cDNA clone set by oligonucleotide fingerprinting allow access to 25 000 potential sugar beet genes. Plant J., 32, 845-857.
8. Kamalay,J.C. and Goldberg,R.B. (1980) Regulation of structural gene expression in tobacco. Cell, 19, 935-946.
9. Kamalay,J.C. and Goldberg,R.B. (1984) Organ-specific nuclear RNAs in tobacco. Proc. Natl Acad. Sci., USA, 81, 2801-2805.
10. Reddy,A.R., Ramkrishna,W., Sekhar,A.C., Ithal,N., Babu,P.R., Bonaldo,M.F., Soares,M.B. and Bennetzen,J.L. (2002) Novel genes are enriched in normalized cDNA libraries from drought-stressed seedlings of rice. Genome, 45, 204-211.
11. The Arabidopsis Genome Initiative (2000) Analysis of the genomic sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796-815.
12. Wang,Y., Wang,X., Guo,S.-W. and Ghosh,S. (2002) Conditions to ensure competitive hybridization in two-colour microarray: A theoretical and experimental analysis. BioTechniques, 32, 1342-1346.
13. Yang,Y.H., Dudoit,S., Luu,P., Lin,D.M., Peng,V., Ngai,J. and Speed,T.P. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res., 30, 4e15.