The positional, structural, and sequence requirements of the Drosophila TLS RNA localization element

RNA

Volumn 11, Issue 7, 2005, Pages 1017-1029

  Cohen, Robert S ^a   Zhang, Sui ^a   Dollar, Gretchen L ^a,b  

^a UNIVERSITY OF KANSAS   (United States)

^b MOUNT SINAI SCHOOL OF MEDICINE   (United States)

Author keywords

Drosophila K10 gene; Drosophila Orb gene; Minor groove recognition; RNA localization; RNA recognition; Stem loop structure

Indexed keywords

MESSENGER RNA; RNA;

ARTICLE; CELLULAR DISTRIBUTION; DROSOPHILA; GENE MUTATION; IN SITU HYBRIDIZATION; NONHUMAN; PRIORITY JOURNAL; RNA SEQUENCE; RNA STRUCTURE; SITE DIRECTED MUTAGENESIS; STEREOCHEMISTRY; TRANSGENIC ANIMAL;

AMINO ACID SEQUENCE; ANIMALS; ANIMALS, GENETICALLY MODIFIED; BASE PAIRING; BASE SEQUENCE; CONSERVED SEQUENCE; DROSOPHILA; DROSOPHILA PROTEINS; EMBRYO, NONMAMMALIAN; FEMALE; GENES, INSECT; GENES, REPORTER; IN SITU HYBRIDIZATION; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; NUCLEAR PROTEINS; NUCLEOTIDE MAPPING; OOCYTES; OVARY; PROTEIN STRUCTURE, SECONDARY; RNA; RNA, MESSENGER; RNA-BINDING PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION, GENETIC; TRANSGENES;

EID: 22244448405     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1261/rna.7218905     Document Type: Article

References (33)

1. Arn, E.A., Cha, B.J., Theurkauf, W.E., and Macdonald, P.M. 2003. Recognition of a bicoid mRNA localization signal by a protein complex containing Swallow, Nod, and RNA binding proteins. Dev. Cell 4: 41-51.
2. Bashirullah, A., Cooperstock, R.L., and Lipshitz, H.D. 1998. RNA localization in development. Annu. Rev. Biochem. 67: 335-394.
3. Bullock, S.L. and Ish-Horowicz, D. 2001. Conserved signals and machinery for RNA transport in Drosophila oogenesis and embryogenesis. Nature 414: 611-616.
4. Cheung, H.-K., Serano, T.L., and Cohen, R.S. 1992. Evidence for a highly selective RNA transport system and its role in establishing the dorsoventral axis of the Drosophila egg. Development 114: 653-661.
5. Cohen, R.S. and Meselson, M. 1985. Separate regulatory elements for the heat-inducible and ovarian expression of the Drosophila hsp26 gene. Cell 42: 737-746.
6. Dubowry, J. and Macdonald, P.M. 1998. Localization of mRNA to the Drosophila oocyte is common in Drosophila ovaries. Mech. Dev. 70: 193-195.
7. Duncan, J.E. and Warrior, R. 2002. The cytoplasmic dynein and kinesin motors have interdependent roles in patterning the Drosophila oocyte. Curr. Biol. 12: 1927-1938.
8. Feinberg, A.P. and Vogelstein, B. 1983. A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132: 6-13.
9. Frugier, M. and Schimmel, P. 1997. Subtle atomic group distribution in the RNA minor groove. Proc. Natl. Acad. Sci. 94: 11291-11294.
10. Hall, K.B. 2002. RNA-protein interactions. Curr. Opin. Struct. Biol. 12: 283-288.
11. Huynh, J.R. and St. Johnston, D. 2004. The origin of asymmetry: Early polarisation of the Drosophila germline cyst and oocyte. Curr. Biol. 14: R438-R449.
12. Januschke, J., Gervais, L., Dass, S., Kaltschmidt, J.A., Lopez-Schier, H., St. Johnston, D., Brand, A.H., Roth, S., and Guichet, A. 2002. Polar transport in the Drosophila oocyte requires Dynein and Kinesin I cooperation. Curr. Biol. 12: 1971-1981.
13. Karlin-McGinness, M., Serano, T.L., and Cohen, R.S. 1996. Comparative analysis of the kinetics and dynamics of K10, bicoid, and oskar mRNA localization in the Drosophila oocyte. Dev. Genet. 19: 238-248.
14. Kloc, M, Zearfoss, N.R., and Etkin, L.D. 2002. Mechanisms of subcellular mRNA localization. Cell 108: 533-544.
15. Kress, T.L., Yoon, Y.J., and Mowry, K.L. 2004. Nuclear RNP complex assembly initiates cytoplasmic RNA localization. J. Cell Biol. 165: 203-211.
16. Lantz, V. and Schedl, P. 1994. Multiple cis-acting target sequences are required for orb mRNA localization during Drosophila oogenesis. Mol. Cell. Biol. 14: 2235-2242.
17. Lantz, V., Ambrosio, L., and Schedl, P. 1992. The Drosophila orb gene is predicted to encode sex-specific germline RNA-binding proteins and has localized transcripts in ovaries and early embryos. Development 115: 75-88.
18. Macdonald, P.M. 1990. bicoid mRNA localization: Phylogenetic conservation of function and RNA secondary structure. Development 110: 161-171.
19. Navarro, C., Puthalakath, H., Adams, J.M., Strasser, A., and Lehmann, R. 2004. Egalitarian binds dynein light chain to establish oocyte polarity and maintain oocyte fate. Nat. Cell Biol. 6: 427-435.
20. Pirrotta, V.1988. Vectors for P-mediated transformation in Drosophila. In Vectors: A survey of molecular cloning vectors and their uses (eds. R.L. Rodriguez and D.T. Denhardt), pp. 437-456. Butterworths, Boston.
21. Powell, J.R. 1997. Progress and prospects in evolutionary biology: The Drosophila model. Oxford University Press, New York.
22. Saenger, W. 1984. Principles of nucleic acids, advanced texts in chemistry. Springer, New York.
23. Saunders, C. and Cohen, R.S. 1999. The role of oocyte transcription, the 5′UTR, and translation repression and derepression in Drosophila gurken mRNA and protein localization. Mol. Cell 3: 43-54.
24. Seeman, N.C., Rosenberg, J.M., and Rich, A. 1976. Sequence-specific recognition of double helical nucleic acids by proteins. Proc. Natl. Acad. Sci. 73: 804-808.
25. Serano, T.L. and Cohen, R.S. 1995a. A single small stem-loop structure mediates K10 mRNA localization. Development 121: 3809-3818.
26. _. 1995b. Gratuitous mRNA localization in the Drosophila oocyte. Development 121: 3013-3021.
27. Serano, T.L., Cheung, H.-K., Frank, L.H., and Cohen, R.S. 1994. P element transformation vectors for studying Drosophila melanogaster oogenesis and early embryogenesis. Gene 138: 181-186.
28. Serano, T.L., Karlin-McGinness, M., and Cohen, R.S. 1995. The role of fs(1)K10 in the localization of the mRNA of the TGFα homolog gurken within the Drosophila oocyte. Mech. Dev. 51: 183-192.
29. Spradling, A.C. 1993. Developmental genetics of oogenesis. In The development of Drosophila melanogaster (eds. M. Bate and A. Martinez Arias ), pp. 1-70. Cold Spring Harbor Press, Cold Spring Harbor, NY.
30. Steiz, T.A. 1990. Structural studies of protein-nucleic acid interaction: The sources of sequence-specific binding. Q. Rev. Biophys. 23: 205-280.
31. Tautz, D. and Pfeifle, C. 1989. A non-radioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback. Chromosoma 98: 81-85.
32. Wilhelm, J.E., Mansfield, J., Hom-Booher, N., Wang, S., Turck, C.W., Hazelrigg, T., and Vale, R.D. 2000. Isolation of a ribonucleoprotein complex involved in mRNA localization in Drosophila oocytes. J. Cell Biol. 148: 427-440.
33. Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31: 3406-3415.