Identification of recurrent chromosomal aberrations in germ cell tumors of neonates and infants using genomewide array-based comparative genomic hybridization

Genes Chromosomes and Cancer

Volumn 43, Issue 4, 2005, Pages 367-376

  Veltman, Imke ^a   Veltman, Joris ^a   Janssen, Irene ^a   Hulsbergen Van De Kaa, Christina ^a   Oosterhuis, Wolter ^b   Schneider, Dominik ^c   Stoop, Hans ^b   Gillis, Ad ^b   Zahn, Susanne ^c   Looijenga, Leendert ^b   Göbel, Ulrich ^c   Geurts Van Kessel, Ad ^a  

^a RADBOUD UNIVERSITY MEDICAL CENTER   (Netherlands)

^b ERASMUS MEDICAL CENTER   (Netherlands)

^c HEINRICH HEINE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

ADOLESCENT; AGE; ARTICLE; CHILD; CHROMOSOME 12P; CHROMOSOME 18Q; CHROMOSOME 1P; CHROMOSOME 1Q; CHROMOSOME 20Q; CHROMOSOME 3P; CHROMOSOME 6Q; CHROMOSOME 7; CHROMOSOME 8; CHROMOSOME ABERRATION; CLINICAL ARTICLE; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; FEMALE; GERM CELL TUMOR; HISTOLOGY; HUMAN; HUMAN TISSUE; INFANT; MALE; NEWBORN; PRIORITY JOURNAL; RECURRENT DISEASE; YOLK SAC TUMOR;

ADOLESCENT; CHILD; CHILD, PRESCHOOL; CHROMOSOME ABERRATIONS; ENDODERMAL SINUS TUMOR; GERMINOMA; HUMANS; INFANT; INFANT, NEWBORN; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; TERATOMA;

EID: 21744444921     PISSN: 10452257     EISSN: None     Source Type: Journal    
DOI: 10.1002/gcc.20208     Document Type: Article

References (46)

1. Bernsen MR, Dijkman HB, de Vries E, Figdor CG, Ruiter DJ, Adema GJ, van Muijen GN. 1998. Identification of multiple mRNA and DNA sequences from small tissue samples isolated by laser-assisted microdissection. Lab Invest 78:1267-1273.
2. Blohm ME, Vesterling-Horner D, Calaminus G, Göbel U. 1998. Alpha 1-feroprotein (AFP) reference values in infants up to 2 years of age. Pediatr Hematol Oncol 15:135-142.
3. Bussey KJ, Lawce HJ, Olson SB, Arthur DC, Kalousek DK, Krailo M, Giller R, Heifetz S, Womer R, Magenis RE. 1999. Chromosome abnormalities of eighty-one pediatric germ cell tumors: sex-, age-, site-, and histopathology-related differences-a Children's Cancer Group study. Genes Chromosomes Cancer 25:134-146.
4. Bussey KJ, Lawce HJ, Himoe E, Shu XO, Heerema MA, Perlman EJ, Olson SB, Magenis RE. 2001. SNRPN methylation patterns in germ cell tumors as a reflection of primordial germ cell development. Genes Chromosomes Cancer 32:342-352.
5. Göbel U, Calaminus G, Engert J, Kaatsch P, Gadner H, Bokkerink JP, Hass RJ, Waag K, Blohm ME, Dippert S, Teske C, Harms D. 1998. Teratomas in infancy and childhood. Med Pediatr Oncol 31:8-15.
6. Göbel U, Schneider DT, Calaminus G, Haas RJ, Schmidt P, Harms D. 2000. Germ-cell tumors in childhood and adolescence. GPOH MAKEI and the MAHO study groups. Ann Oncol 11:263-271.
7. Gonzalez-Crussi F. 1982. Extragonadal teratomas. 2nd series, Fas-cicle 18. Washington, DC: Armed Forces Institute of Pathology.
8. Harms D, Janig U. 1986. Germ cell turnouts of childhood. Report of 170 cases including 59 pute and partial yolk-sac tumours. Virchows Arch A Pathol Anat Histopathol 409:223-239.
9. Hawkins E, Issacs H, Cushing B, Rogers P. 1993. Occult malignancy in neonatal sactococcygeal teratomas. A report from a Combined Pediatric Oncology Group and Children's Cancer Group study. Am J Pediatr Hematol Oncol 15:406-409.
10. Heidenblad M, Schoenmakers EF, Jonson T, Gorunova L, Veltman JA, Geurts van Kessel A, Hoglund M. 2004. Genome-wide array-based comparative genomic hybridization reveals multiple amplification targets and novel homozygous deletions in pancreatic carcinoma cell lines. Cancer Res 64:3052-3059.
11. Henegariu O, Heerema NA, Thurston V, Jung SH, Pera M, Vance GH. 2004. Characterization of gains, losses, and regional amplification in testicular germ cell tumor cell lines by comparative genomic hybridization. Cancer Genet Cytogenet 148:14-20.
12. Hodgson JG, Chin K, Collins C, Gray JW. 2003. Genome amplification of chromosome 20 in breast cancer. Breast Cancer Res Treat 78:337-345.
13. Hu J, Schuster AE, Fritsch MK, Schneider DT, Lauer S, Perlman EJ. 2001. Deletion mapping of 6q21-E6 and frequency of 1p36 deletion in childhood endodermal sinus tumors bv microsatellite analysis. Oncogene 20:8042-8044.
14. Iafrate AJ, Feuk L, Rivera MN, Listewnik ML, Donahoe PK, Qi Y, Scherer SW, Lee C. 2004. Detection of large-scale variation in the human genome. Nat Genet 36:949-951.
15. Isaacs H Jr. 2004. Perinatal (fetal and neonatal) germ cell tumors. J Pediatr Surg 39:1003-1013.
16. Kimura Y, Noguchi T, Kawahara K, Kashima K, Daa T, Yokoyama S. 2004. Genetic alterations in 102 primary gastric cancers by comparative genomic hybridization: gain of 20q and loss of 18q are associated with tumor progression. Mod Pathol 17:1328-1337.
17. Kraggerud SM, Szymanska J, Abeler VM, Kaern J, Eknaes M, Heim S, Teixeira MR, Trope CG, Peltomaki P, Lothe RA. 2000. DNA copy number changes in malignant ovarian germ cell tumors. Cancer Res 60:3025-3030.
18. Looijenga LH, Oosterhuis JW. 1999. Pathogenesis of testicular germ cell tumours. Rev Reprod 4:90-100.
19. Looijenga LH, Rosenberg C, Van Gurp RJ, Geelen E, Echten-Arends J, de Jong B, Mostert M, Oosterhuis JW. 2000. Comparative genomic hybridization of microdissected samples from different stages in the development of a seminoma and a non-seminoma. J Pathol 191:187-192.
20. Looijenga LH, Zafarana G, Grygalewicz B, Summersgill B, Debiec-Rychter M, Veltman J, Schoenmakers EF, Rodriguez S, Jafer O, Clark J, Geurts van Kessel A, Shipley J, Van Gurp RJ, Gillis AJ, Oostethuis JW. 2003. Role of gain of 12p in germ cell tumour development. APMIS 111:161-171.
21. Mostert M, Rosenberg C, Stoop H, Schuyer M, Timmer A, Oosterhuis J, Looijenga L. 2000. Comparative genomic and in situ hybridization of germ cell tumors of the infantile testis. Lab invest 80:1055-1064.
22. Oosterhuis JW, Looijenga LH, van Echten J, de Jong B. 1997. Chromosomal constitution and developmental potential of human germ cell tumors and teratomas. Cancer Genet Cytogenet 95:96-102.
23. Perlman EJ, Gushing B, Hawkins E, Griffin CA. 1994. Cytogenetic analysis of childhood endodermal sinus tumors: a Pediatric Oncology Group study. Pediatr Pathol 14:695-708.
24. Perlman EJ, Valentine MB, Griffin CA, Look AT. 1996. Deletion of 1p36 in childhood endodermal sinus tumors by two-color fluorescence in situ hybridization: a Pediatric Oncology Group study. Genes Chromosomes Cancer 16:15-20.
25. Perlman EJ, Hu J, Ho D, Cushing B, Lauer S, Castleberry RP. 2000. Genetic analysis of childhood endodermal sinus tumors by comparative genomic hybridization. J Pediatr Hematol Oncol 22:100-105.
26. Riopel MA, Spellerberg A, Griffin CA, Perlman EJ. 1998. Genetic analysis of ovarian germ cell tumors by comparative genomic hybridization. Cancer Res 58:3105-3110.
27. Rodriguez S, Jafer O, Goker H, Summersgill BM, Zafarana G, Gillis AJ, Van Gurp RJ, Oosterhuis JW, Lu YJ, Huddart R, Cooper CS, Clark J, Looijenga LH, Shipley JM. 2003. Expression profile of genes from 12p in testicular germ cell tumors of adolescents and adults associated with i(12p) and amplification at 12p11.2-p12.1. Oncogene 22:1880-1891.
28. Ross JA, Schmidt PT, Perentesis JP, Davies SM. 1999. Genomic imprinting of H19 and insulin-like growth factor-2 in pediatric germ cell tumors. Cancer 85:1389-1394.
29. Sano K. 1999. Pathogenesis of intracranial germ cell tumors reconsidered. J Neurosurg 90:258-264.
30. Schneider DT, Schuster AE, Fritsch MK, Calaminus G, Harms D, Göbel U, Perlman EJ. 2001a. Genetic analysis of childhood germ cell tumors with comparative genomic hybridization. Klin Padiatr 213:204-211.
31. Schneider DT, Schuster AE, Fritsch MK, Hu J, Olson T, Lauer S, Göbel U, Perlman EJ. 2001b. Multipoint imprinting analysis indicates a common precursor cell for gonadal and nongonadal pediatric germ cell tumors. Cancer Res 61:7268-7276.
32. Schneider DT, Schuster AE, Fritsch MK, Calaminus G, Göbel U, Harms D, Lauer S, Olson T, Perlman EJ. 2002. Genetic analysis of mediastinal nonseminomatous germ cell tumors in children and adolescents. Genes Chromosomes Cancer 34:115-125.
33. Schneider DT, Calaminus G, Koch S, Teske C, Schmidt P, Haas RJ, Harms D, Göbel U. 2004. Epidemiologic analysis of 1,442 children and adolescents registered in the German germ cell tumor protocols. Pediatr Blood Cancer 42:169-175.
34. Sebat J, Lakshmi B, Troge J, Alexander J, Young J, Lundin P, Maner S, Massa H, Walker M, Chi M, Navin N, Lucito R, Healy J, Hicks J, Ye K, Reiner A, Gilliam TC, Trask B, Patterson N, Zetterberg A, Wigler M. 2004. Large-scale copy number polymorphism in the human genome. Science 305:525-528.
35. Stoop H, van Gurp R, de Krijger R, Geurts van Kessel A, Koberle B, Oosterhuis W, Looijenga L. 2001. Reactivity of germ cell maturation stage-specific markers in spermatocytic seminoma: diagnostic and etiological implications. Lab Invest 81:919-928.
36. van Echten J, van Doorn LC, van der Linden HC, van der Veen AY, Burger CW, de Jong B. 1998. Cytogenetics of a malignant ovarian germ-cell tumor. Int J Cancer 77:217-218.
37. van Echten J, Timmer A, van der Veen AY, Molenaar WM, de Jong B. 2002. Infantile and adult testicular germ cell tumors, a different pathogenesis? Cancer Genet Cytogenet 135:57-62.
38. Van Gurp RJ, Oosterhuis JW, Kalscheuer V, Mariman EC, Looijenga LH. 1994. Biallelic expression of the H19 and IGF2 genes in human testicular germ cell tumors. J Natl Cancer Inst 86:1070-1075.
39. Veltman I, van Asseldonk M, Schepens M, Stoop H, Looijenga L, Wouters C, Govaerts L, Suijkerbuijk R, Geurts van Kessel A. 2002. A novel case of infantile sacral teratoma and a constitutional t(12;15)(q13;q25) pat. Cancer Genet Cytogenet 136:17-22.
40. Veltman IM, Schepens MT, Looijenga LHJ, Strong LC, Geurts van Kessel A. 2003a. Germ cell tumours in neonaces and infants: a distinct subgroup? APMIS 111:152-160.
41. Veltman JA, Fridlyand J, Pejavar S, Olshen AB, Korkola JE, de Vries S, Carroll P, Kuo WL, Pinkel D, Albertson D, Cordon-Cardo C, Jain AN, Waldman FM. 2003b. Array-based comparative genomic hybridization for genomewide screening of DNA copy number in bladder tumors. Cancer Res 63:2872-2880.
42. Vissers LE, de Vries BB, Osoegawa K, Janssen IM, Feuth T, Choy CO, Straatman H, Van der Vliet W, Huys EH, van Rijk A, Smeets D, Ravenswaaij-Arts CM, Knoers NV, van del Burgt I, de Jong PJ, Brunner HG, Geurts van Kessel A, Schoenmakers EF, Veltman JA. 2003. Array-based comparative genomic hybridization for the genomewide detection of submicroscopic chromosomal abnormalities. Am J Hum Genet 73:1261-1270.
43. Vissers LE, van Ravenswaaij CM, Admiraal R, Hurst JA, de Vries BB, Janssen IM, van der Vliet WA, Huys EH, de Jong PJ, Hamel BC, Schoenmakers EF, Brunner HG, Veltman JA, Geurts van Kessel A. 2004. Mutations in a new member of the chromodomain gene family cause CHARGE syndrome. Nat Genet 36: 955-957.
44. Wilhelm M, Veltman JA, Olshen AB, Jain AN, Moore DH, Presti JC Jr, Kovacs G, Waldman FM. 2002. Array-based comparative genomic hybridization for the differential diagnosis of renal cell cancer. Cancer Res 62:957-960.
45. Woodward PJ, Heidenreich A, Looijenga LHJ, et al. 2004. Testicular germ cell tumors. In: Eble JN, Sauter G, Epstein JI, Sesterhenn IA, editors. World Health Organization classification of tumours. Pathology and genetics of the urinary system and male genital organs. Lyon, France: IARC Press. p 217-278.
46. Zafarana G, Grygalewicz B, Gillis AJ, Vissers LE, van der Vliet WA, Van Gurp RJ, Stoop H, Debiec-Rychter M, Oosterhuis JW, Geurts van Kessel A, Schoenmakers EF, Looijenga LH, Veltman JA. 2003. 12p-Amplicon structure analysis in testicular germ cell tumors of adolescents and adults by array CGH. Oncogene 22:7695-7701.