The targets of CAPRI Rounds 3-5

Proteins: Structure, Function and Genetics

Volumn 60, Issue 2, 2005, Pages 170-175

  Janin, Joël ^a  

^a LABORATOIRE D ENZYMOLOGIE ET BIOCHIMIE STRUCTURALES   (France)

Author keywords

Conformation changes; Epitope prediction; Protein protein complexes; Protein protein docking; Quaternary structure

Indexed keywords

EPITOPE; OLIGOMER; PROTEIN;

ANTIGEN ANTIBODY COMPLEX; COMPLEX FORMATION; CONFERENCE PAPER; CONFORMATIONAL TRANSITION; ENZYME REGULATION; MOLECULAR MODEL; MOLECULAR RECOGNITION; OLIGOMERIZATION; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN PROTEIN INTERACTION; PROTEIN QUATERNARY STRUCTURE; PROTEIN STRUCTURE; SIGNAL TRANSDUCTION; X RAY CRYSTALLOGRAPHY;

ALGORITHMS; BACTERIAL PROTEINS; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; DATABASES, PROTEIN; DIMERIZATION; HUMANS; INTERNET; MACROMOLECULAR SUBSTANCES; MODELS, MOLECULAR; MODELS, STATISTICAL; MOLECULAR CONFORMATION; PROTEIN CONFORMATION; PROTEIN INTERACTION MAPPING; PROTEOMICS; REPRODUCIBILITY OF RESULTS; SOFTWARE; STRUCTURAL HOMOLOGY, PROTEIN;

EID: 21644487998     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.20553     Document Type: Conference Paper

References (13)

1. Janin J, Henrick K, Moult J, Ten Eyck L, Sternberg M, Vajda S, Wakser I, Wodak SJ. CAPRI: A Critical Assessment of PRedicted Interactions. Proteins 2003;52:2-9.
2. Méndez R, Leplae R, De Maria L, Wodak SJ. Assessment of blind predictions of protein-protein interactions: current status of docking methods. Proteins 2003;52:51-67.
3. Wodak SJ, Mendez R. Predictions of protein-protein interactions: the CAPRI experiment, its evaluation and implications. Curr Opin Struct Biol 2004; 14:242-249.
4. Takagi J, Yang Y, Liu JH, Wang JH, Springer TA. Complex between nidogen and laminin fragments reveals a paradigmatic beta-propeller interface. Nature 2003;424:969-974.
5. Bressanelli S, Stiasny K, Allison SL, Stura EA, Duquerroy S, Lescar J, Heinz FX, Rey FA. Structure of a flavivirus envelope glycoprotein in its low-pH induced membrane fusion conformation. EMBO J 2004;23:728-738.
6. Graille M, Zhou CZ, Receveur-Bréchot V, Collinet B, Declerck N, van Tilbeurgh H. Activation of the LicT transcriptional antiterminator involves a domain swing/lock mechanism provoking massive structural changes. J Biol Chem 2005;280:14780-14789.
7. Carvalho AL, Dias FMV, Prates JAM, Nagy T, Gilbert HJ, Davies GJ, Ferreira LMA, Romao MJ, Fontes CMGA. Cellulosome assembly revealed by the crystal structure of the cohesin-dockerin complex. Proc Natl Acad Sci USA 2003;100:13809-13814.
8. Terrak M, Kerff F, Langsetmo K, Tao T, Dominguez R. Structural basis of protein phosphatase 1 regulation. Nature 2004;429:780-784.
9. Graille M, Mora L, Buckingham RH, van Tilbeurgh H, de Zamaroczy M. Structural inhibition of the colicin D tRNase by the tRNA-mimicking immunity protein. EMBO J 2004;23:1474-1482.
10. Eghiaian F, Grosclaude J, Lesceu S, Debey P, Doublet B, Tréguer E, Rezaei H, Knossow M. Insight into the PrPc→PrPsc conversion from the structures of antibody-bound ovine prion scrapie-susceptibility variants. Proc Natl Acad Sci USA 2004;100:10254-10259.
11. Graille M, Stura E, Bossus M, Muller BH, Letourneur O, Battail-Poirot N, Sibaï G, Gauthier M, Rolland D, Le Du MH, Ducancel F. Structure of the immunodominant epitope displayed by the surface antigen 1 (SAG1) of Toxoplasma gondii complexed to a monoclonal antibody. 2005. Submitted for publication.
12. Sansen S, De Ranter CJ, Gebruers K, Kristof Brijs K, Courtin CM, Jan A. Delcour, Rabijns A. Structural basis for inhibition of Aspergillus niger xylanase by Triticum aestivum xylanase inhibitor-I. J Biol Chem 2004;279:36022-36028.
13. Wodak S, Janin J. The structural basis of macromolecular recognition. Adv Protein Chem 2002;61:9-68.