Binding of N-acetylglucosamine oligosaccharides to hen egg-white lysozyme: A powder diffraction study

Acta Crystallographica Section D: Biological Crystallography

Volumn 61, Issue 1, 2005, Pages 22-32

  Von Dreele, R B ^a  

^a ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EGG WHITE; LIGAND; LYSOZYME; N ACETYLGLUCOSAMINE; OLIGOSACCHARIDE; PROTEIN;

ALGORITHM; ANIMAL; ANISOTROPY; ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; CHICKEN; ELECTRON; FOURIER ANALYSIS; METHODOLOGY; PH; POWDER DIFFRACTION; PROTEIN BINDING; STATISTICAL MODEL; STEREOISOMERISM; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

ACETYLGLUCOSAMINE; ALGORITHMS; ANIMALS; ANISOTROPY; BINDING SITES; CHICKENS; CRYSTALLOGRAPHY, X-RAY; EGG WHITE; ELECTRONS; FOURIER ANALYSIS; HYDROGEN-ION CONCENTRATION; LIGANDS; MODELS, MOLECULAR; MODELS, STATISTICAL; MURAMIDASE; OLIGOSACCHARIDES; POWDER DIFFRACTION; PROTEIN BINDING; PROTEINS; STEREOISOMERISM; X-RAY DIFFRACTION;

EID: 21644469160     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444904025715     Document Type: Article

References (39)

1. Altomare, A., Casarano, G., Giacovazzo, C., Guagliardi, A. & Moliterna, G. G. (1995). J. Appl. Cryst. 28, 738-744.
2. Blake, C. C. F., Johnson, L. N., Mair, G. A., North, A. C. T., Phillips, D. C. & Sarma, V. R. (1967). Proc. R. Soc. London Ser. B, 167, 378-388.
3. Cheetham, J. C., Artymiuk, P. J. & Phillips, D. C. (1992). J. Mol. Biol. 224, 613-628.
4. Cheetham, A. K. & Taylor, J. C. (1977). J. Solid State Chem. 21, 253-275.
5. Colovos, C. & Yeates, T. O. (1993). Protein Sci. 2, 1511-1519.
6. DeLano, W. L. (2004). The PyMOL Molecular Graphics System. DeLano Scientific LLC, San Carlos, CA, USA. http://www.pymol.org/.
7. Dinnebier, R. E., Von Dreele, R. B., Stephens, P. W., Jelonek, S. & Sieler, J. (1999). J. Appl. Cryst. 32, 761-769.
8. Dodson, E. (1998). Acta Cryst. D54, 1109-1118.
9. Engh, R. A. & Huber, R. (1991). Acta Cryst. A47, 392-400.
10. Fong, K., Jefferson, T., Suyehiro, T. & Walton L. (1993). Guide to the SLATEC Common Mathematical Library, http://www.netlib.org/ slatec.
11. Guex, N. & Peitsch, M. C. (1999). SwissPDBViewer. Glaxo Wellcome Experimental Research, http://www.expasy.ch/spdbv.
12. Harris, K. D. M. & Tremayne, M. (1996). Chem. Mater. 8, 2554-2570.
13. Hill, R. J. & Madsen, I. C. (1986). J. Appl. Cryst. 19, 10-18.
14. James, R. W. (1965). The Optical Principles of The Diffraction of X-rays, pp. 517-518. Ithaca: Cornell University Press.
15. Larson, A. C. & Von Dreele, R. B. (2004). General Structure Analysis System (GSAS), Los Alamos National Laboratory Report LAUR 86-748. http://www.ccp14.ac.uk/ccp/ccp14/ftp-mirror/gsas/public/ gsas.
16. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
17. Lebedev, A. A., Tickle, I. J., Laskowski, R. A. & Moss, D. S. (2003). Acta Cryst. D59, 1557-1566.
18. McCusker, L. B., Von Dreele, R. B., Cox, D. E., Löuer, D. & Scardi, P. (1999). J. Appl. Cryst. 32, 36-50.
19. Madsen, I. C. & Hill, R. J. (1994). J. Appl. Cryst. 27, 385-392.
20. Matthews, B. W. (1976). J. Mol. Biol. 33, 491-497.
21. Morris, A. L., MacArthur, M. W., Hutchinson, E. G. & Thornton, J. M. (1992). Proteins, 12, 345-364.
22. Natchiar, S. K., Jeyaprakash, A. A., Ramya, T. N. C., Thomas, C. J., Suguna, K., Surolia, A. & Vijayan, M. (2004). Acta Cryst. D60, 211-219.
23. Pagola, S., Stephens, P. W., Bohle, D. S., Kosar, A. D. & Madsen, S. K. (2000). Nature (London), 404, 307-310.
24. Perkins, S. J., Johnson, L. N., Machin, P. A. & Phillips, D. C. (1978). Biochem. J. 173, 607-616.
25. Poojary, D. M. & Clearfield, A. (1997). Acc. Chem. Res. 30, 414-422.
26. Post, J. E. & Bish, D. L. (1989). Modern Powder Diffraction. Reviews in Mineralogy, Vol. 20, edited by D. L. Bish & J. E. Post, pp. 278-308. Washington: Mineralogical Society of America.
27. Prince, E. (1981). J. Appl. Cryst. 14, 157-159.
28. Ramachandran, G. N., Ramakrishnan, C. & Sasisekharan, V. (1963). J. Mol. Biol. 7, 95-99.
29. Rietveld, H. M. (1969). J. Appl. Cryst. 2, 65-71.
30. Rupley, J. A. & Gates, V. (1967). Proc. Natl Acad. Sci. USA, 57, 496-510.
31. Sussman, J. L. (1984). Methods and Applications in Crystallographic Computing, edited by S. R. Hall & T. Ashida, pp. 206-237. Oxford University Press.
32. Vaguine, A. A., Richelle, J. & Wodak, S. J. (1999). Acta Cryst. D55, 191-205.
33. Von Dreele, R. B. (1989). Modern Powder Diffraction. Reviews in Mineralogy, Vol. 20, edited by D. L. Bish & J. E. Post, pp. 334-369. Washington: Mineralogical Society of America.
34. Von Dreele, R. B. (1999). J. Appl. Cryst. 32, 1084-1089.
35. Von Dreele, R. B. (2001). Acta Cryst. D57, 1836-1842.
36. Von Dreele, R. B. (2003). Methods Enzymol. 368C, 254-267.
37. Von Dreele, R. B., Stephens, P. W., Blessing, R. H. & Smith, G. W. (2000). Acta Cryst. D56, 1549-1553.
38. Warren, B. E. (1990). X-Ray Diffraction, pp. 47-49. New York: Dover.
39. Yeates, T. O. (2004). Private communication. http://www.doe-mbi.ucla.edu/ Services/ERRATv2.