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Volumn 33, Issue SUPPL. 2, 2005, Pages

PROTINFO: New algorithms for enhanced protein structure predictions

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; INFORMATION PROCESSING; INTERNET; PREDICTION; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN STRUCTURE; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT; ALGORITHM; CLIENT SERVER APPLICATION; CONSENSUS DEVELOPMENT; IMAGE ANALYSIS; MOLECULAR MODEL; SYSTEM ANALYSIS; CHEMICAL STRUCTURE; STRUCTURAL HOMOLOGY;

EID: 21444448763     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki403     Document Type: Article
Times cited : (56)

References (19)
  • 1
    • 0042622449 scopus 로고    scopus 로고
    • PROTINFO: Secondary and tertiary protein structure prediction
    • Hung,L.-H. and Samudrala,R. (2003) PROTINFO: Secondary and tertiary protein structure prediction. Nucleic Acids Res., 31, 3736-3737.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3736-3737
    • Hung, L.-H.1    Samudrala, R.2
  • 2
    • 0032611514 scopus 로고    scopus 로고
    • A combined approach for ab initio construction of low resolution protein tertiary structures from sequence
    • Altman,R., Dunker,A., Hunter,L., Klein,T. and Lauderdale,K. (eds), World Scientific Press, Honolulu, Hawaii
    • Samudrala,R., Xia,Y., Levitt,M. and Huang,E. (1999) A combined approach for ab initio construction of low resolution protein tertiary structures from sequence. In Altman,R., Dunker,A., Hunter,L., Klein,T. and Lauderdale,K. (eds), Proceedings of the Pacific Symposium on Biocomputing. World Scientific Press, Honolulu, Hawaii, pp. 505-516.
    • (1999) Proceedings of the Pacific Symposium on Biocomputing , pp. 505-516
    • Samudrala, R.1    Xia, Y.2    Levitt, M.3    Huang, E.4
  • 3
    • 0032577270 scopus 로고    scopus 로고
    • A graph-theoretic algorithm for comparative modelling of protein structure
    • Samudrala,R. and Moult,J. (1998) A graph-theoretic algorithm for comparative modelling of protein structure. J. Mol. Biol., 279, 287-302.
    • (1998) J. Mol. Biol. , vol.279 , pp. 287-302
    • Samudrala, R.1    Moult, J.2
  • 4
    • 0031794714 scopus 로고    scopus 로고
    • Determinants of side chain conformational preferences in protein structures
    • Samudrala,R. and Moult,J. (1998) Determinants of side chain conformational preferences in protein structures. Protein Eng., 11, 991-997.
    • (1998) Protein Eng. , vol.11 , pp. 991-997
    • Samudrala, R.1    Moult, J.2
  • 5
    • 0032606133 scopus 로고    scopus 로고
    • Ab initio protein structure prediction using a combined hierarchical approach
    • Samudrala,R., Xia,Y., Huang,E. and Levitt,M. (1999) Ab initio protein structure prediction using a combined hierarchical approach. Proteins, S3, 194-198.
    • (1999) Proteins , vol.S3 , pp. 194-198
    • Samudrala, R.1    Xia, Y.2    Huang, E.3    Levitt, M.4
  • 6
    • 0033861004 scopus 로고    scopus 로고
    • Side chain construction on near-native main chains for ab initio protein structure prediction
    • Samudrala,R., Huang,E., Koehl,P. and Levitt,M. (2000) Side chain construction on near-native main chains for ab initio protein structure prediction. Protein Eng., 7, 453-457.
    • (2000) Protein Eng. , vol.7 , pp. 453-457
    • Samudrala, R.1    Huang, E.2    Koehl, P.3    Levitt, M.4
  • 7
    • 3342936478 scopus 로고    scopus 로고
    • A comprehensive analysis of 40 blind protein structure predictions
    • Samudrala,R. and Levitt,M. (2002) A comprehensive analysis of 40 blind protein structure predictions. BMC Struct. Biol., 2, 3-18.
    • (2002) BMC Struct. Biol. , vol.2 , pp. 3-18
    • Samudrala, R.1    Levitt, M.2
  • 8
    • 0037304379 scopus 로고    scopus 로고
    • Accurate and automated assignment of secondary structure with PsiCSI
    • Hung,L.-H. and Samudrala,R. (2003) Accurate and automated assignment of secondary structure with PsiCSI. Protein Sci.,12, 288-295.
    • (2003) Protein Sci. , vol.12 , pp. 288-295
    • Hung, L.-H.1    Samudrala, R.2
  • 9
    • 4544355522 scopus 로고    scopus 로고
    • Improved protein structure selection using decoy-dependent discriminatory functions
    • Wang,K., Fain,B., Levitt,M. and Samudrala,R. (2004) Improved protein structure selection using decoy-dependent discriminatory functions. BMC Struct. Biol., 4, 296.
    • (2004) BMC Struct. Biol. , vol.4 , pp. 296
    • Wang, K.1    Fain, B.2    Levitt, M.3    Samudrala, R.4
  • 10
    • 0032606039 scopus 로고    scopus 로고
    • Critical Assessment of Methods of Protein Structure Prediction (CASP): Round III
    • Moult,J., Hubbard,T., Fidelis,K. and Pedersen,J. (1999) Critical Assessment of Methods of Protein Structure Prediction (CASP): Round III. Proteins, 3(Suppl), 2-6.
    • (1999) Proteins , vol.3 , Issue.SUPPL. , pp. 2-6
    • Moult, J.1    Hubbard, T.2    Fidelis, K.3    Pedersen, J.4
  • 11
    • 0028832701 scopus 로고
    • Confronting the problem of interconnected structural changes in the comparative modelling of proteins
    • Samudrala,R., Pedersen,J., Zhou,H., Luo,R., Fidelis,K. and Moult,J. (1995) Confronting the problem of interconnected structural changes in the comparative modelling of proteins. Proteins, 23, 327-336.
    • (1995) Proteins , vol.23 , pp. 327-336
    • Samudrala, R.1    Pedersen, J.2    Zhou, H.3    Luo, R.4    Fidelis, K.5    Moult, J.6
  • 12
    • 0031308498 scopus 로고    scopus 로고
    • Handling context-sensitivity in protein structures using graph theory: Bona fide prediction
    • Samudrala,R. and Moult,J. (1997) Handling context-sensitivity in protein structures using graph theory: Bona fide prediction. Proteins, 29(Suppl.), 43-49.
    • (1997) Proteins , vol.29 , Issue.SUPPL. , pp. 43-49
    • Samudrala, R.1    Moult, J.2
  • 13
    • 0032488962 scopus 로고    scopus 로고
    • An all-atom distance dependent conditional probability discriminatory function for protein structure prediction
    • Samudrala,R. and Moult,J. (1998) An all-atom distance dependent conditional probability discriminatory function for protein structure prediction. J. Mol. Biol., 275, 895-916.
    • (1998) J. Mol. Biol. , vol.275 , pp. 895-916
    • Samudrala, R.1    Moult, J.2
  • 14
    • 84976668743 scopus 로고
    • Algorithm 457: Finding all cliques of an undirected graph
    • Bron,C. and Kerhosch,J. (1973) Algorithm 457: Finding all cliques of an undirected graph. Commun. ACM, 16, 575-577.
    • (1973) Commun. ACM , vol.16 , pp. 575-577
    • Bron, C.1    Kerhosch, J.2
  • 15
    • 0038386050 scopus 로고    scopus 로고
    • 3D-Jury: A simple approach to improve protein structure prediction
    • Ginalski,K., Elofsson,A., Fischer,D. and Rychlewski,L. (2003) 3D-Jury: A simple approach to improve protein structure prediction. Bioinformatics, 19, 1015-1018.
    • (2003) Bioinformatics , vol.19 , pp. 1015-1018
    • Ginalski, K.1    Elofsson, A.2    Fischer, D.3    Rychlewski, L.4
  • 16
    • 3042812835 scopus 로고    scopus 로고
    • Simple linear model provides highly accurate genotypic predictions of hiv-1 drug resistance
    • Wang,K., Jenwitheesuk,E., Samudrala,R. and Mittler,J. (2004) Simple linear model provides highly accurate genotypic predictions of hiv-1 drug resistance. Antivir. Ther., 9, 343-352.
    • (2004) Antivir. Ther. , vol.9 , pp. 343-352
    • Wang, K.1    Jenwitheesuk, E.2    Samudrala, R.3    Mittler, J.4
  • 17
    • 16244403666 scopus 로고    scopus 로고
    • Prediction of HIV-1 protease inhibitor resistance using a protein-inhibitor flexible docking approach
    • Jenwitheesuk,E. and Samudrala,R. (2005) Prediction of HIV-1 protease inhibitor resistance using a protein-inhibitor flexible docking approach. Antivir. Ther., 10, 157-166.
    • (2005) Antivir. Ther. , vol.10 , pp. 157-166
    • Jenwitheesuk, E.1    Samudrala, R.2
  • 18
    • 4444356080 scopus 로고    scopus 로고
    • Improved accuracy of hiv-1 genotypic susceptibility interpretation using a consensus approach
    • Jenwitheesuk,R., Wang,K., Mittler,J. and Samudrala,R. (2004) Improved accuracy of hiv-1 genotypic susceptibility interpretation using a consensus approach. AIDS, 18, 1858-1859.
    • (2004) AIDS , vol.18 , pp. 1858-1859
    • Jenwitheesuk, R.1    Wang, K.2    Mittler, J.3    Samudrala, R.4
  • 19
    • 16244398637 scopus 로고    scopus 로고
    • Pirspred: A web server for reliable hiv-1 protein-inhibitor resistance/susceptibility prediction
    • Jenwitheesuk,E., Wang,K., Mittler,J. and Samudrala,R. (2005) Pirspred: A web server for reliable hiv-1 protein-inhibitor resistance/ susceptibility prediction. Trends Microbiol., 13, 150-151.
    • (2005) Trends Microbiol. , vol.13 , pp. 150-151
    • Jenwitheesuk, E.1    Wang, K.2    Mittler, J.3    Samudrala, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.