-
1
-
-
0042622449
-
PROTINFO: Secondary and tertiary protein structure prediction
-
Hung,L.-H. and Samudrala,R. (2003) PROTINFO: Secondary and tertiary protein structure prediction. Nucleic Acids Res., 31, 3736-3737.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3736-3737
-
-
Hung, L.-H.1
Samudrala, R.2
-
2
-
-
0032611514
-
A combined approach for ab initio construction of low resolution protein tertiary structures from sequence
-
Altman,R., Dunker,A., Hunter,L., Klein,T. and Lauderdale,K. (eds), World Scientific Press, Honolulu, Hawaii
-
Samudrala,R., Xia,Y., Levitt,M. and Huang,E. (1999) A combined approach for ab initio construction of low resolution protein tertiary structures from sequence. In Altman,R., Dunker,A., Hunter,L., Klein,T. and Lauderdale,K. (eds), Proceedings of the Pacific Symposium on Biocomputing. World Scientific Press, Honolulu, Hawaii, pp. 505-516.
-
(1999)
Proceedings of the Pacific Symposium on Biocomputing
, pp. 505-516
-
-
Samudrala, R.1
Xia, Y.2
Levitt, M.3
Huang, E.4
-
3
-
-
0032577270
-
A graph-theoretic algorithm for comparative modelling of protein structure
-
Samudrala,R. and Moult,J. (1998) A graph-theoretic algorithm for comparative modelling of protein structure. J. Mol. Biol., 279, 287-302.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 287-302
-
-
Samudrala, R.1
Moult, J.2
-
4
-
-
0031794714
-
Determinants of side chain conformational preferences in protein structures
-
Samudrala,R. and Moult,J. (1998) Determinants of side chain conformational preferences in protein structures. Protein Eng., 11, 991-997.
-
(1998)
Protein Eng.
, vol.11
, pp. 991-997
-
-
Samudrala, R.1
Moult, J.2
-
5
-
-
0032606133
-
Ab initio protein structure prediction using a combined hierarchical approach
-
Samudrala,R., Xia,Y., Huang,E. and Levitt,M. (1999) Ab initio protein structure prediction using a combined hierarchical approach. Proteins, S3, 194-198.
-
(1999)
Proteins
, vol.S3
, pp. 194-198
-
-
Samudrala, R.1
Xia, Y.2
Huang, E.3
Levitt, M.4
-
6
-
-
0033861004
-
Side chain construction on near-native main chains for ab initio protein structure prediction
-
Samudrala,R., Huang,E., Koehl,P. and Levitt,M. (2000) Side chain construction on near-native main chains for ab initio protein structure prediction. Protein Eng., 7, 453-457.
-
(2000)
Protein Eng.
, vol.7
, pp. 453-457
-
-
Samudrala, R.1
Huang, E.2
Koehl, P.3
Levitt, M.4
-
7
-
-
3342936478
-
A comprehensive analysis of 40 blind protein structure predictions
-
Samudrala,R. and Levitt,M. (2002) A comprehensive analysis of 40 blind protein structure predictions. BMC Struct. Biol., 2, 3-18.
-
(2002)
BMC Struct. Biol.
, vol.2
, pp. 3-18
-
-
Samudrala, R.1
Levitt, M.2
-
8
-
-
0037304379
-
Accurate and automated assignment of secondary structure with PsiCSI
-
Hung,L.-H. and Samudrala,R. (2003) Accurate and automated assignment of secondary structure with PsiCSI. Protein Sci.,12, 288-295.
-
(2003)
Protein Sci.
, vol.12
, pp. 288-295
-
-
Hung, L.-H.1
Samudrala, R.2
-
9
-
-
4544355522
-
Improved protein structure selection using decoy-dependent discriminatory functions
-
Wang,K., Fain,B., Levitt,M. and Samudrala,R. (2004) Improved protein structure selection using decoy-dependent discriminatory functions. BMC Struct. Biol., 4, 296.
-
(2004)
BMC Struct. Biol.
, vol.4
, pp. 296
-
-
Wang, K.1
Fain, B.2
Levitt, M.3
Samudrala, R.4
-
10
-
-
0032606039
-
Critical Assessment of Methods of Protein Structure Prediction (CASP): Round III
-
Moult,J., Hubbard,T., Fidelis,K. and Pedersen,J. (1999) Critical Assessment of Methods of Protein Structure Prediction (CASP): Round III. Proteins, 3(Suppl), 2-6.
-
(1999)
Proteins
, vol.3
, Issue.SUPPL.
, pp. 2-6
-
-
Moult, J.1
Hubbard, T.2
Fidelis, K.3
Pedersen, J.4
-
11
-
-
0028832701
-
Confronting the problem of interconnected structural changes in the comparative modelling of proteins
-
Samudrala,R., Pedersen,J., Zhou,H., Luo,R., Fidelis,K. and Moult,J. (1995) Confronting the problem of interconnected structural changes in the comparative modelling of proteins. Proteins, 23, 327-336.
-
(1995)
Proteins
, vol.23
, pp. 327-336
-
-
Samudrala, R.1
Pedersen, J.2
Zhou, H.3
Luo, R.4
Fidelis, K.5
Moult, J.6
-
12
-
-
0031308498
-
Handling context-sensitivity in protein structures using graph theory: Bona fide prediction
-
Samudrala,R. and Moult,J. (1997) Handling context-sensitivity in protein structures using graph theory: Bona fide prediction. Proteins, 29(Suppl.), 43-49.
-
(1997)
Proteins
, vol.29
, Issue.SUPPL.
, pp. 43-49
-
-
Samudrala, R.1
Moult, J.2
-
13
-
-
0032488962
-
An all-atom distance dependent conditional probability discriminatory function for protein structure prediction
-
Samudrala,R. and Moult,J. (1998) An all-atom distance dependent conditional probability discriminatory function for protein structure prediction. J. Mol. Biol., 275, 895-916.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 895-916
-
-
Samudrala, R.1
Moult, J.2
-
14
-
-
84976668743
-
Algorithm 457: Finding all cliques of an undirected graph
-
Bron,C. and Kerhosch,J. (1973) Algorithm 457: Finding all cliques of an undirected graph. Commun. ACM, 16, 575-577.
-
(1973)
Commun. ACM
, vol.16
, pp. 575-577
-
-
Bron, C.1
Kerhosch, J.2
-
15
-
-
0038386050
-
3D-Jury: A simple approach to improve protein structure prediction
-
Ginalski,K., Elofsson,A., Fischer,D. and Rychlewski,L. (2003) 3D-Jury: A simple approach to improve protein structure prediction. Bioinformatics, 19, 1015-1018.
-
(2003)
Bioinformatics
, vol.19
, pp. 1015-1018
-
-
Ginalski, K.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
16
-
-
3042812835
-
Simple linear model provides highly accurate genotypic predictions of hiv-1 drug resistance
-
Wang,K., Jenwitheesuk,E., Samudrala,R. and Mittler,J. (2004) Simple linear model provides highly accurate genotypic predictions of hiv-1 drug resistance. Antivir. Ther., 9, 343-352.
-
(2004)
Antivir. Ther.
, vol.9
, pp. 343-352
-
-
Wang, K.1
Jenwitheesuk, E.2
Samudrala, R.3
Mittler, J.4
-
17
-
-
16244403666
-
Prediction of HIV-1 protease inhibitor resistance using a protein-inhibitor flexible docking approach
-
Jenwitheesuk,E. and Samudrala,R. (2005) Prediction of HIV-1 protease inhibitor resistance using a protein-inhibitor flexible docking approach. Antivir. Ther., 10, 157-166.
-
(2005)
Antivir. Ther.
, vol.10
, pp. 157-166
-
-
Jenwitheesuk, E.1
Samudrala, R.2
-
18
-
-
4444356080
-
Improved accuracy of hiv-1 genotypic susceptibility interpretation using a consensus approach
-
Jenwitheesuk,R., Wang,K., Mittler,J. and Samudrala,R. (2004) Improved accuracy of hiv-1 genotypic susceptibility interpretation using a consensus approach. AIDS, 18, 1858-1859.
-
(2004)
AIDS
, vol.18
, pp. 1858-1859
-
-
Jenwitheesuk, R.1
Wang, K.2
Mittler, J.3
Samudrala, R.4
-
19
-
-
16244398637
-
Pirspred: A web server for reliable hiv-1 protein-inhibitor resistance/susceptibility prediction
-
Jenwitheesuk,E., Wang,K., Mittler,J. and Samudrala,R. (2005) Pirspred: A web server for reliable hiv-1 protein-inhibitor resistance/ susceptibility prediction. Trends Microbiol., 13, 150-151.
-
(2005)
Trends Microbiol.
, vol.13
, pp. 150-151
-
-
Jenwitheesuk, E.1
Wang, K.2
Mittler, J.3
Samudrala, R.4
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