-
1
-
-
0348107036
-
Bridging genetic networks and queuing theory
-
A. Arazi, E. Ben-Jacob, and U. Yechiali Bridging genetic networks and queuing theory Physica A 332 2004 585 616
-
(2004)
Physica a
, vol.332
, pp. 585-616
-
-
Arazi, A.1
Ben-Jacob, E.2
Yechiali, U.3
-
3
-
-
0016828929
-
Dynamics of ligand binding to myoglobin
-
R.H. Austin, K.W. Beeson, L. Eisenstein, H. Frauenfelder, and I.C. Gunsalus Dynamics of ligand binding to myoglobin Biochemistry 14 24 1975 5355 5373
-
(1975)
Biochemistry
, vol.14
, Issue.24
, pp. 5355-5373
-
-
Austin, R.H.1
Beeson, K.W.2
Eisenstein, L.3
Frauenfelder, H.4
Gunsalus, I.C.5
-
4
-
-
51249194541
-
Stochastic models for chemical reactions: I. theory of the unimolecular reaction process
-
A.F. Bartholomay Stochastic models for chemical reactions: I. theory of the unimolecular reaction process Math. Biophys. 20 1958 175 190
-
(1958)
Math. Biophys.
, vol.20
, pp. 175-190
-
-
Bartholomay, A.F.1
-
5
-
-
51249195624
-
Stochastic models for chemical reactions: II. the unimolecular rate constant
-
A.F. Bartholomay Stochastic models for chemical reactions: II. the unimolecular rate constant Math. Biophys. 21 1959 363 373
-
(1959)
Math. Biophys.
, vol.21
, pp. 363-373
-
-
Bartholomay, A.F.1
-
6
-
-
0242416539
-
Noise in eukaryotic gene expression
-
W.J. Blake, M. Kaern, C.R. Cantor, and J.J. Collins Noise in eukaryotic gene expression Nature 422 6932 2003 633 637
-
(2003)
Nature
, vol.422
, Issue.6932
, pp. 633-637
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
Collins, J.J.4
-
7
-
-
0004171968
-
-
Interscience Publishers, Inc. New York
-
E. Bodewig Matrix Calculus 1959 Interscience Publishers, Inc. New York
-
(1959)
Matrix Calculus
-
-
Bodewig, E.1
-
8
-
-
0042925420
-
Single-molecule transition-state analysis of RNA folding
-
G. Bokinsky, D. Rueda, V.K. Misra, M.M. Rhodes, A. Gordus, H.P. Babcock, N.G. Walter, and X. Zhuang Single-molecule transition-state analysis of RNA folding Proc. Natl. Acad. Sci. USA 100 16 2003 9302 9307
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, Issue.16
, pp. 9302-9307
-
-
Bokinsky, G.1
Rueda, D.2
Misra, V.K.3
Rhodes, M.M.4
Gordus, A.5
Babcock, H.P.6
Walter, N.G.7
Zhuang, X.8
-
9
-
-
0037449908
-
Single-molecule kinetics with time-dependent rates: A generating function approach
-
F.L.H. Brown Single-molecule kinetics with time-dependent rates: a generating function approach Phys. Rev. Lett. 90 2 2003 028302
-
(2003)
Phys. Rev. Lett.
, vol.90
, Issue.2
, pp. 028302
-
-
Brown, F.L.H.1
-
10
-
-
0000975456
-
Stochastic models for second-order chemical reaction kinetics, the equilibrium state
-
I.G. Darvey, B.W. Ninham, and P.J. Staff Stochastic models for second-order chemical reaction kinetics, the equilibrium state J. Chem. Phys. 45 6 1966 2145 2155
-
(1966)
J. Chem. Phys.
, vol.45
, Issue.6
, pp. 2145-2155
-
-
Darvey, I.G.1
Ninham, B.W.2
Staff, P.J.3
-
11
-
-
0010052667
-
Stochastic approach to first-order chemical reaction kinetics
-
I.G. Darvey, and P.J. Staff Stochastic approach to first-order chemical reaction kinetics J. Chem. Phys. 44 3 1966 990
-
(1966)
J. Chem. Phys.
, vol.44
, Issue.3
, pp. 990
-
-
Darvey, I.G.1
Staff, P.J.2
-
12
-
-
0000296912
-
Statistical fluctuations in autocatalytic reactions
-
M. Delbruck Statistical fluctuations in autocatalytic reactions J. Chem. Phys. 8 1940 120 124
-
(1940)
J. Chem. Phys.
, vol.8
, pp. 120-124
-
-
Delbruck, M.1
-
14
-
-
0037119587
-
Stochastic gene expression in a single cell
-
M.B. Elowitz, A.J. Levine, E.D. Siggia, and P.S. Swain Stochastic gene expression in a single cell Science 297 5584 2002 1183 1186
-
(2002)
Science
, vol.297
, Issue.5584
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
15
-
-
9844237923
-
Stochastic triangular reactions
-
A.G. Fredrickson Stochastic triangular reactions Chem. Engg. Sci. 21 1966 687 691
-
(1966)
Chem. Engg. Sci.
, vol.21
, pp. 687-691
-
-
Fredrickson, A.G.1
-
16
-
-
21444443957
-
Stochastic models for bacteriophage
-
J. Gani Stochastic models for bacteriophage J. Appl. Prob. 2 1965 225 268
-
(1965)
J. Appl. Prob.
, vol.2
, pp. 225-268
-
-
Gani, J.1
-
17
-
-
21444437719
-
Open first-order stochastic processes
-
P.J. Gans Open first-order stochastic processes J. Chem. Phys. 33 3 1960 691
-
(1960)
J. Chem. Phys.
, vol.33
, Issue.3
, pp. 691
-
-
Gans, P.J.1
-
19
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
D.T. Gillespie A general method for numerically simulating the stochastic time evolution of coupled chemical reactions J. Comput. Phys. 22 1976 403 434
-
(1976)
J. Comput. Phys.
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
22
-
-
0026100586
-
Protein dynamics. comparative investigation on heme-proteins with different physiological roles
-
E.E.D. Iorio, U.R. Hiltpold, D. Filipovic, K.H. Winterhalter, E. Gratton, E. Vitrano, A. Cupane, M. Leone, and L. Cordone Protein dynamics. comparative investigation on heme-proteins with different physiological roles Biophys. J 59 3 1991 742 754
-
(1991)
Biophys. J
, vol.59
, Issue.3
, pp. 742-754
-
-
Iorio, E.E.D.1
Hiltpold, U.R.2
Filipovic, D.3
Winterhalter, K.H.4
Gratton, E.5
Vitrano, E.6
Cupane, A.7
Leone, M.8
Cordone, L.9
-
23
-
-
0003842084
-
Reversibility and Stochastic Networks
-
John Wiley and Sons New York, NY, USA
-
F.P. Kelly Reversibility and Stochastic Networks Wiley Series in Probability and Mathematical Statistics 1979 John Wiley and Sons New York, NY, USA London, UK, Sydney, Australia
-
(1979)
Wiley Series in Probability and Mathematical Statistics
-
-
Kelly, F.P.1
-
24
-
-
0002024701
-
On the generalized "birth-and-death" process
-
D.G. Kendall On the generalized "birth-and-death" process Ann. Math. Stat. 19 1 1948 1 15
-
(1948)
Ann. Math. Stat.
, vol.19
, Issue.1
, pp. 1-15
-
-
Kendall, D.G.1
-
25
-
-
0035193294
-
Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations
-
T.B. Kepler, and T.C. Elston Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations Biophys. J. 81 6 2001 3116 3136
-
(2001)
Biophys. J.
, vol.81
, Issue.6
, pp. 3116-3136
-
-
Kepler, T.B.1
Elston, T.C.2
-
26
-
-
0005571745
-
Mean first passage time for a random walker and its application to chemical kinetics
-
S.K. Kim Mean first passage time for a random walker and its application to chemical kinetics J. Chem. Phys. 28 6 1958 1057 1067
-
(1958)
J. Chem. Phys.
, vol.28
, Issue.6
, pp. 1057-1067
-
-
Kim, S.K.1
-
27
-
-
0038797143
-
Generalization of the Ehrenfest urn model
-
M.J. Klein Generalization of the Ehrenfest urn model Phys. Rev. 103 1 1956 17 20
-
(1956)
Phys. Rev.
, vol.103
, Issue.1
, pp. 17-20
-
-
Klein, M.J.1
-
28
-
-
21444433803
-
First-order stochastic processes
-
I.M. Krieger, and P.J. Gans First-order stochastic processes J. Chem. Phys. 32 1 1960 247
-
(1960)
J. Chem. Phys.
, vol.32
, Issue.1
, pp. 247
-
-
Krieger, I.M.1
Gans, P.J.2
-
29
-
-
0035044484
-
Self-organisation and orderly processes by individual protein complexes in the bacterial cell
-
H. Kuthan Self-organisation and orderly processes by individual protein complexes in the bacterial cell Prog. Biophys. Mol. Biol. 75 1-2 2001 1 17
-
(2001)
Prog. Biophys. Mol. Biol.
, vol.75
, Issue.1-2
, pp. 1-17
-
-
Kuthan, H.1
-
30
-
-
0034702713
-
An analytical solution of the stochastic master equation for reversible biomolecular reaction kinetics
-
I.J. Laurenzi An analytical solution of the stochastic master equation for reversible biomolecular reaction kinetics J. Chem. Phys. 113 8 2000 3315 3322
-
(2000)
J. Chem. Phys.
, vol.113
, Issue.8
, pp. 3315-3322
-
-
Laurenzi, I.J.1
-
31
-
-
0037213715
-
Gene expression and the myth of the average cell
-
J.M. Levsky, and R.H. Singer Gene expression and the myth of the average cell Trends Cell Biol. 13 1 2003 4 6
-
(2003)
Trends Cell Biol.
, vol.13
, Issue.1
, pp. 4-6
-
-
Levsky, J.M.1
Singer, R.H.2
-
32
-
-
0037456298
-
The complete folding pathway of a protein from nanoseconds to microseconds
-
U. Mayor, N.R. Guydosh, C.M. Johnson, J.G. Grossmann, S. Sato, G.S. Jas, S.M. Freund, D.O. Alonso, V. Daggett, and A.R. Fersht The complete folding pathway of a protein from nanoseconds to microseconds Nature 421 6925 2003 863 867
-
(2003)
Nature
, vol.421
, Issue.6925
, pp. 863-867
-
-
Mayor, U.1
Guydosh, N.R.2
Johnson, C.M.3
Grossmann, J.G.4
Sato, S.5
Jas, G.S.6
Freund, S.M.7
Alonso, D.O.8
Daggett, V.9
Fersht, A.R.10
-
33
-
-
0001596858
-
Kinetics of small systems
-
D.A. McQuarrie Kinetics of small systems J. Chem. Phys. 38 2 1963 433 436
-
(1963)
J. Chem. Phys.
, vol.38
, Issue.2
, pp. 433-436
-
-
McQuarrie, D.A.1
-
35
-
-
0000792867
-
The application of the theory of stochastic processes to chemical kinetics
-
E.W. Montroll, and K.E. Shuler The application of the theory of stochastic processes to chemical kinetics Adv. Chem. Phys. 1 1958 361 399
-
(1958)
Adv. Chem. Phys.
, vol.1
, pp. 361-399
-
-
Montroll, E.W.1
Shuler, K.E.2
-
36
-
-
0003504682
-
-
John Wiley and Sons New York, NY, USA
-
G. Nicolis, and I. Prigogine Self-organization in nonequilibrium systems: from dissipative structures to order through fluctuations 1977 John Wiley and Sons New York, NY, USA London, UK, Sydney, Australia, A Wiley-Interscience Publication
-
(1977)
Self-organization in Nonequilibrium Systems: From Dissipative Structures to Order Through Fluctuations
-
-
Nicolis, G.1
Prigogine, I.2
-
39
-
-
0342446262
-
The interaction of structure and dynamics in chemical reaction networks
-
K.H. Ebert P. Deuflhard W. Jager Springer-Verlag New York
-
H.G. Othmer The interaction of structure and dynamics in chemical reaction networks K.H. Ebert P. Deuflhard W. Jager Modelling of Chemical Reaction Systems 1981 Springer-Verlag New York 1 19
-
(1981)
Modelling of Chemical Reaction Systems
, pp. 1-19
-
-
Othmer, H.G.1
-
40
-
-
0015128941
-
Instability and dynamic pattern in cellular networks
-
H.G. Othmer, and L.E. Scriven Instability and dynamic pattern in cellular networks J. Theor. Biol. 32 1971 507 537
-
(1971)
J. Theor. Biol.
, vol.32
, pp. 507-537
-
-
Othmer, H.G.1
Scriven, L.E.2
-
41
-
-
0036578645
-
Regulation of noise in the expression of a single gene
-
E.M. Ozbudak, M. Thattai, I. Kurtser, A.D. Grossman, and A. van Oudenaarden Regulation of noise in the expression of a single gene Nat. Genet. 31 1 2002 69 73
-
(2002)
Nat. Genet.
, vol.31
, Issue.1
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
Van Oudenaarden, A.5
-
42
-
-
0037444724
-
Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm
-
C.V. Rao, and A.P. Arkin Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm J. Chem. Phys. 118 11 2003 4999 5010
-
(2003)
J. Chem. Phys.
, vol.118
, Issue.11
, pp. 4999-5010
-
-
Rao, C.V.1
Arkin, A.P.2
-
43
-
-
0542392237
-
Relaxation processes in multistate systems
-
K.F. Shuler Relaxation processes in multistate systems Phys. Fluids 2 4 1960 442 448
-
(1960)
Phys. Fluids
, vol.2
, Issue.4
, pp. 442-448
-
-
Shuler, K.F.1
-
44
-
-
0006291640
-
On the approach to statistical equilibrium
-
A.J.F. Siegert On the approach to statistical equilibrium Phys. Rev. 76 11 1949 1708 1714
-
(1949)
Phys. Rev.
, vol.76
, Issue.11
, pp. 1708-1714
-
-
Siegert, A.J.F.1
-
45
-
-
0009543725
-
Application of the theory of stochastic processes to the study of irreproducible chemical reactions and nucleation processes
-
K. Singer Application of the theory of stochastic processes to the study of irreproducible chemical reactions and nucleation processes J. Roy. Stat. Soc. Ser. B 15 1 1953 92 106
-
(1953)
J. Roy. Stat. Soc. Ser. B
, vol.15
, Issue.1
, pp. 92-106
-
-
Singer, K.1
-
46
-
-
0017185026
-
Non-genetic individuality: Chance in the single cell
-
J.L. Spudich, and D.E. Koshland Non-genetic individuality: chance in the single cell Nature 262 5568 1976 467 471
-
(1976)
Nature
, vol.262
, Issue.5568
, pp. 467-471
-
-
Spudich, J.L.1
Koshland, D.E.2
-
47
-
-
0030211187
-
Stochastic simulation of coupled reaction-diffusion processes
-
A.B. Stundzia, and C.J. Lumsden Stochastic simulation of coupled reaction-diffusion processes J. Comput. Phys. 127 0168 1996 196 207
-
(1996)
J. Comput. Phys.
, vol.127
, Issue.168
, pp. 196-207
-
-
Stundzia, A.B.1
Lumsden, C.J.2
-
48
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
P.S. Swain, M.B. Elowitz, and E.D. Siggia Intrinsic and extrinsic contributions to stochasticity in gene expression Proc. Natl. Acad. Sci. USA 99 20 2002 12795 12800
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.20
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
51
-
-
0002275384
-
The dynamics of feedback control circuits in biochemical pathways
-
J.J. Tyson, and H.G. Othmer The dynamics of feedback control circuits in biochemical pathways Prog. Theor. Biol. 5 1978 1 62
-
(1978)
Prog. Theor. Biol.
, vol.5
, pp. 1-62
-
-
Tyson, J.J.1
Othmer, H.G.2
-
52
-
-
0012745042
-
The structure and analysis of complex reaction systems
-
J. Wei, and C.D. Prater The structure and analysis of complex reaction systems Adv. Catal. 13 1962 203
-
(1962)
Adv. Catal.
, vol.13
, pp. 203
-
-
Wei, J.1
Prater, C.D.2
|