-
1
-
-
0031912528
-
Evolution of the plant mitochondrial genome: Dynamics of duplication and deletion of sequences
-
Albert B, Godelle B, Gouyon PH (1998) Evolution of the plant mitochondrial genome: dynamics of duplication and deletion of sequences. J Mol Evol 46:155-158
-
(1998)
J Mol Evol
, vol.46
, pp. 155-158
-
-
Albert, B.1
Godelle, B.2
Gouyon, P.H.3
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0027016508
-
Mitochondrial rps14 is transcribed and edited the pseudogene in Arabidopsis thaliana
-
Aubert D, Bisanz-Seyer C, Herzog M (1992) Mitochondrial rps14 is transcribed and edited the pseudogene in Arabidopsis thaliana. Plant Mol Biol 20:1169-1174
-
(1992)
Plant Mol Biol
, vol.20
, pp. 1169-1174
-
-
Aubert, D.1
Bisanz-Seyer, C.2
Herzog, M.3
-
4
-
-
2142668868
-
The nature of families of repeated DNA sequences in plants
-
Rubenstein I, Phillips R, Green C, Gengenbach B (eds) Academic Press, New York
-
Bendich A (1979) The nature of families of repeated DNA sequences in plants. In: Rubenstein I, Phillips R, Green C, Gengenbach B (eds) Molecular biology of plants. Academic Press, New York, pp 1-30
-
(1979)
Molecular Biology of Plants
, pp. 1-30
-
-
Bendich, A.1
-
5
-
-
2142731822
-
Independently generated mosaic (MSC) cucumbers possess different mitochondrial rearrangements
-
in press
-
Bartoszewski G, Malepszy S, Havey MJ (2004) Independently generated mosaic (MSC) cucumbers possess different mitochondrial rearrangements. Curr Genet (in press)
-
(2004)
Curr Genet
-
-
Bartoszewski, G.1
Malepszy, S.2
Havey, M.J.3
-
6
-
-
0039259122
-
Morphometric analysis of cucurbit mitochondria: The relationship between chondriome volume and DNA content
-
Bendich A, Gauriloff L (1984) Morphometric analysis of cucurbit mitochondria: the relationship between chondriome volume and DNA content. Protoplasma 119:1-7
-
(1984)
Protoplasma
, vol.119
, pp. 1-7
-
-
Bendich, A.1
Gauriloff, L.2
-
7
-
-
0033976643
-
Transposable element contributions to plant gene and genome evolution
-
Bennetzen, JL (2000) Transposable element contributions to plant gene and genome evolution. Plant Mol Biol 42:251-269
-
(2000)
Plant Mol Biol
, vol.42
, pp. 251-269
-
-
Bennetzen, J.L.1
-
8
-
-
0033555906
-
Tandem repeats finder: A program to analyze DNA sequences
-
Benson G (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27:573-580
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
9
-
-
0018036479
-
The mitochondrial genome of yeast
-
Borst P, Grivell LA (1978) The mitochondrial genome of yeast. Cell 15:705-723
-
(1978)
Cell
, vol.15
, pp. 705-723
-
-
Borst, P.1
Grivell, L.A.2
-
10
-
-
0029743043
-
A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes
-
Bureau TE, Ronald PC, Wessler SR (1996) A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes. Proc Natl Acad Sci USA 93:8524-8529
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 8524-8529
-
-
Bureau, T.E.1
Ronald, P.C.2
Wessler, S.R.3
-
11
-
-
0023277545
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
-
Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 2:156-159
-
(1987)
Anal Biochem
, vol.2
, pp. 156-159
-
-
Chomczynski, P.1
Sacchi, N.2
-
12
-
-
0001144273
-
The apocytochrome b gene in maize mitochondria does not contain introns and is preceded by a potential ribosome binding site
-
Dawson A, Jones V, Leaver C (1984) The apocytochrome b gene in maize mitochondria does not contain introns and is preceded by a potential ribosome binding site. EMBO J 3:2107-2113
-
(1984)
EMBO J
, vol.3
, pp. 2107-2113
-
-
Dawson, A.1
Jones, V.2
Leaver, C.3
-
13
-
-
0000681457
-
Nucleotide sequence of ATPase subunit 6 gene of maize mitochondria
-
Dewey R, Levings C, Timothy D (1985) Nucleotide sequence of ATPase subunit 6 gene of maize mitochondria. Plant Physiol 79:914-919
-
(1985)
Plant Physiol
, vol.79
, pp. 914-919
-
-
Dewey, R.1
Levings, C.2
Timothy, D.3
-
14
-
-
0019310310
-
Distinctive sequence of human mitochondrial ribosomal RNA genes
-
Eperon IC, Anderson S, Nierlich DP (1980) Distinctive sequence of human mitochondrial ribosomal RNA genes. Nature 286:460-467
-
(1980)
Nature
, vol.286
, pp. 460-467
-
-
Eperon, I.C.1
Anderson, S.2
Nierlich, D.P.3
-
15
-
-
0025014898
-
The mitochondrial genome organization of a maize fertile CMS T revertant line is generated through two sets of repeats
-
Fauron C, Havlik M, Brettell R (1990) The mitochondrial genome organization of a maize fertile CMS T revertant line is generated through two sets of repeats. Genetics 124:423-428
-
(1990)
Genetics
, vol.124
, pp. 423-428
-
-
Fauron, C.1
Havlik, M.2
Brettell, R.3
-
16
-
-
0029176379
-
Maize as a model of higher plant mitochondrial genome plasticity
-
Fauron CR, Moore B, Casper M (1995) Maize as a model of higher plant mitochondrial genome plasticity. Plant Sci 112:11-32
-
(1995)
Plant Sci
, vol.112
, pp. 11-32
-
-
Fauron, C.R.1
Moore, B.2
Casper, M.3
-
17
-
-
85158058496
-
Miniature inverted-repeat transposable elements and their relationship to established DNA transposons
-
Craig NL (ed) ASM Press, Washington, USA
-
Feschotte C, Zhang X, Wessler SR (2002) Miniature inverted-repeat transposable elements and their relationship to established DNA transposons. In: Craig NL (ed) Mobile DNA II. ASM Press, Washington, USA, pp 1147-1158
-
(2002)
Mobile DNA II
, pp. 1147-1158
-
-
Feschotte, C.1
Zhang, X.2
Wessler, S.R.3
-
18
-
-
0034252265
-
RNA degradation buffers asymmetries of transcription in Arabidopsis mitochondria
-
Giegé P, Hoffmann M, Binder S, Brennicke A (2000) RNA degradation buffers asymmetries of transcription in Arabidopsis mitochondria. EMBO Rep 1:164-170
-
(2000)
EMBO Rep
, vol.1
, pp. 164-170
-
-
Giegé, P.1
Hoffmann, M.2
Binder, S.3
Brennicke, A.4
-
22
-
-
0003157261
-
The cytochrome oxidase subunit I and in genes in Oenothera mitochondria are transcribed from identical promoter sequences
-
Hiesel R, Schobel W, Schuster W, Brennicke A (1987) The cytochrome oxidase subunit I and in genes in Oenothera mitochondria are transcribed from identical promoter sequences. EMBO J 6:29-34
-
(1987)
EMBO J
, vol.6
, pp. 29-34
-
-
Hiesel, R.1
Schobel, W.2
Schuster, W.3
Brennicke, A.4
-
23
-
-
0033004412
-
Cotranscription of the rpl5-rps14-cob gene cluster in pea mitochondria
-
Hoffmann M, Dombrowski S, Guha C, Binder S (1999) Cotranscription of the rpl5-rps14-cob gene cluster in pea mitochondria. Mol Gen Genet 261:537-545
-
(1999)
Mol Gen Genet
, vol.261
, pp. 537-545
-
-
Hoffmann, M.1
Dombrowski, S.2
Guha, C.3
Binder, S.4
-
24
-
-
0000678077
-
Conservation of ribosomal RNA gene arrangement in the mitochondrial DNA of angiosperms
-
Huh TY, Gray MW (1982) Conservation of ribosomal RNA gene arrangement in the mitochondrial DNA of angiosperms. Plant Mol Biol 1:245-249
-
(1982)
Plant Mol Biol
, vol.1
, pp. 245-249
-
-
Huh, T.Y.1
Gray, M.W.2
-
25
-
-
0000256217
-
The maize cytochrome c oxidase subunit-I gene: Sequence, expression, and rearrangement in cytoplasmic male sterile plants
-
Isaac P, Jones V, Leaver C (1985) The maize cytochrome c oxidase subunit-I gene: sequence, expression, and rearrangement in cytoplasmic male sterile plants. EMBO J 4:1617-1623
-
(1985)
EMBO J
, vol.4
, pp. 1617-1623
-
-
Isaac, P.1
Jones, V.2
Leaver, C.3
-
26
-
-
0034284437
-
Repbase update: A database and an electronic journal of repetitive elements
-
Jurka J (2000) Repbase update: a database and an electronic journal of repetitive elements. Trends Genet 16:418-420
-
(2000)
Trends Genet
, vol.16
, pp. 418-420
-
-
Jurka, J.1
-
27
-
-
0028501382
-
Physical mapping of the mitochondrial genome of Arabidopsis thaliana by cosmid and YAC clones
-
Klein M, Eckertossenkopp U, Schmiedeberg I, Brandt P, Unseld M, Brennicke A, Schuster W (1994) Physical mapping of the mitochondrial genome of Arabidopsis thaliana by cosmid and YAC clones. Plant J 6:447-455
-
(1994)
Plant J
, vol.6
, pp. 447-455
-
-
Klein, M.1
Eckertossenkopp, U.2
Schmiedeberg, I.3
Brandt, P.4
Unseld, M.5
Brennicke, A.6
Schuster, W.7
-
28
-
-
0029670967
-
Copia-, gypsy- and LINE-like retrotransposon fragments in the mitochondrial genome of Arabidopsis thaliana
-
Knoop V, Unseld M, Marienfeld J, Brandt P, Sunkel S, Ullrich H, Brennicke A (1996) Copia-, gypsy- and LINE-like retrotransposon fragments in the mitochondrial genome of Arabidopsis thaliana. Genetics 142:579-585
-
(1996)
Genetics
, vol.142
, pp. 579-585
-
-
Knoop, V.1
Unseld, M.2
Marienfeld, J.3
Brandt, P.4
Sunkel, S.5
Ullrich, H.6
Brennicke, A.7
-
30
-
-
0033066718
-
REPuter: Fast computation of maximal repeats in complete genomes
-
Kurtz S, Schleiermacher C (1999) REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics 15:426-427
-
(1999)
Bioinformatics
, vol.15
, pp. 426-427
-
-
Kurtz, S.1
Schleiermacher, C.2
-
31
-
-
0034815350
-
Small repetitive DNAs contribute significantly to the expanded mitochondrial genome of cucumber
-
Lilly JW, Havey MJ (2001) Small repetitive DNAs contribute significantly to the expanded mitochondrial genome of cucumber. Genetics 159:317-328
-
(2001)
Genetics
, vol.159
, pp. 317-328
-
-
Lilly, J.W.1
Havey, M.J.2
-
32
-
-
0034787717
-
A major deletion in the cucumber mitochondrial genome sorts with MSC phenotype
-
Lilly JW, Bartoszewski G, Malepszy S, Havey MJ (2001) A major deletion in the cucumber mitochondrial genome sorts with MSC phenotype. Curr Genet 40:144-151
-
(2001)
Curr Genet
, vol.40
, pp. 144-151
-
-
Lilly, J.W.1
Bartoszewski, G.2
Malepszy, S.3
Havey, M.J.4
-
33
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955-964
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
34
-
-
0025358023
-
Structural analysis of mature and dicistronic transcripts from the 18S and 5S ribosomal RNA genes of maize mitochondria
-
Maloney AP, Walbot V (1990) Structural analysis of mature and dicistronic transcripts from the 18S and 5S ribosomal RNA genes of maize mitochondria. J Mol Biol 213:633-649
-
(1990)
J Mol Biol
, vol.213
, pp. 633-649
-
-
Maloney, A.P.1
Walbot, V.2
-
35
-
-
0025326727
-
Compilation of small ribosomal subunit RNA sequences
-
Neefs JM, Van de Peer Y, Hendriks L, De Wachter R (1990) Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res 18 Suppl:2237-2317
-
(1990)
Nucleic Acids Res
, vol.18
, Issue.SUPPL.
, pp. 2237-2317
-
-
Neefs, J.M.1
Van De Peer, Y.2
Hendriks, L.3
De Wachter, R.4
-
36
-
-
0001096022
-
Plant mitochondrial genomes: Organization, expression and variation
-
Newton KJ (1988) Plant mitochondrial genomes: organization, expression and variation. Annu Rev Plant Physiol Plant Mol Biol 39:503-532
-
(1988)
Annu Rev Plant Physiol Plant Mol Biol
, vol.39
, pp. 503-532
-
-
Newton, K.J.1
-
37
-
-
0026035996
-
An improved bacterial colony lysis procedure enables direct DNA hybridization using short (10-bases, 11 bases) oligonucleotides to cosmids
-
Nizetic D, Drmanac R, Lehrach H (1991) An improved bacterial colony lysis procedure enables direct DNA hybridization using short (10-bases, 11 bases) oligonucleotides to cosmids. Nucleic Acids Res 19:182-182
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 182-182
-
-
Nizetic, D.1
Drmanac, R.2
Lehrach, H.3
-
38
-
-
0036456491
-
The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of the flowering plants
-
Notsu Y, Masood S, Nishikawa T, Kubo N, Akiduki G, Nakazono M, Hirai A, Kadowaki K (2002) The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of the flowering plants. Mol Gen Genet 268:434-445
-
(2002)
Mol Gen Genet
, vol.268
, pp. 434-445
-
-
Notsu, Y.1
Masood, S.2
Nishikawa, T.3
Kubo, N.4
Akiduki, G.5
Nakazono, M.6
Hirai, A.7
Kadowaki, K.8
-
39
-
-
0024120025
-
Location, identity, amount and serial entry of chloroplast DNA sequences in crucifer mitochondrial DNAs
-
Nugent JM, Palmer JD (1988) Location, identity, amount and serial entry of chloroplast DNA sequences in crucifer mitochondrial DNAs. Curr Genet 14:501-509
-
(1988)
Curr Genet
, vol.14
, pp. 501-509
-
-
Nugent, J.M.1
Palmer, J.D.2
-
40
-
-
0023476739
-
Unicircular structure of the Brassica hirta mitochondrial genome
-
Palmer JD, Herbon LA (1987) Unicircular structure of the Brassica hirta mitochondrial genome. Curr Genet 11:565-570
-
(1987)
Curr Genet
, vol.11
, pp. 565-570
-
-
Palmer, J.D.1
Herbon, L.A.2
-
41
-
-
0030197641
-
The rpl5-rps14-cob gene arrangement in Solanum tuberosum: rps14 is a transcribed and unedited pseudogene
-
Quiñones V, Zanlungo S, Moenne A, Gòmez I, Holuigue L, Litvak S, Jordana X (1996) The rpl5-rps14-cob gene arrangement in Solanum tuberosum: rps14 is a transcribed and unedited pseudogene. Plant Mol Biol 31:937-943
-
(1996)
Plant Mol Biol
, vol.31
, pp. 937-943
-
-
Quiñones, V.1
Zanlungo, S.2
Moenne, A.3
Gòmez, I.4
Holuigue, L.5
Litvak, S.6
Jordana, X.7
-
42
-
-
0034020416
-
PipMaker - A web server for aligning two genomic DNA sequences
-
Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer K, Bouck J, Gibbs R, Hardison R, Miller W (2000) PipMaker - a web server for aligning two genomic DNA sequences. Genome Res 10:577-586
-
(2000)
Genome Res
, vol.10
, pp. 577-586
-
-
Schwartz, S.1
Zhang, Z.2
Frazer, K.A.3
Smit, A.4
Riemer, K.5
Bouck, J.6
Gibbs, R.7
Hardison, R.8
Miller, W.9
-
43
-
-
0024968984
-
Evolution of plant mitochondrial genomes via sub-stoichiometric intermediates
-
Small I, Suffolk R, Leaver C (1989) Evolution of plant mitochondrial genomes via sub-stoichiometric intermediates. Cell 58:69-76
-
(1989)
Cell
, vol.58
, pp. 69-76
-
-
Small, I.1
Suffolk, R.2
Leaver, C.3
-
44
-
-
0035852717
-
Eight novel families of miniature inverted repeat transposable elements in the African malaria mosquito, Anopheles gambiae
-
Tu Z (2001) Eight novel families of miniature inverted repeat transposable elements in the African malaria mosquito, Anopheles gambiae. Proc Natl Acad Sci USA 98:1699-1704
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 1699-1704
-
-
Tu, Z.1
-
45
-
-
0031021278
-
The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides
-
Unseld M, Marienfeld JR, Brandt P, Brennicke A (1997) The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nature Genet 15:57-61
-
(1997)
Nature Genet
, vol.15
, pp. 57-61
-
-
Unseld, M.1
Marienfeld, J.R.2
Brandt, P.3
Brennicke, A.4
-
46
-
-
0019137322
-
Precise localization and nucleotide sequence of the two mouse mitochondrial rRNA genes and three immediately adjacent novel tRNA genes
-
Van Etten RA, Walberg MW, Clayton DA (1980) Precise localization and nucleotide sequence of the two mouse mitochondrial rRNA genes and three immediately adjacent novel tRNA genes. Cell 22:157-170
-
(1980)
Cell
, vol.22
, pp. 157-170
-
-
Van Etten, R.A.1
Walberg, M.W.2
Clayton, D.A.3
-
47
-
-
0019441235
-
The mitochondrial genome is large and variable in a family of plants (Cucurbitaceae)
-
Ward BL, Anderson RS, Bendich AJ (1981) The mitochondrial genome is large and variable in a family of plants (Cucurbitaceae). Cell 25:793-803
-
(1981)
Cell
, vol.25
, pp. 793-803
-
-
Ward, B.L.1
Anderson, R.S.2
Bendich, A.J.3
-
48
-
-
0034892488
-
The origin and maintenance of the small repeat in the bean mitochondrial genome
-
Woloszynska M, Kieleczawa J, Ornatowska M Wozniak M, Janska H (2001) The origin and maintenance of the small repeat in the bean mitochondrial genome. Mol Gen Genet 265:865-872
-
(2001)
Mol Gen Genet
, vol.265
, pp. 865-872
-
-
Woloszynska, M.1
Kieleczawa, J.2
Ornatowska, M.3
Wozniak, M.4
Janska, H.5
-
49
-
-
0003094804
-
Mitochondrial genome organization
-
CS Levings III, IK Vasil (eds) Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Wolstenholme DR, Fauron CMR (1995) Mitochondrial genome organization. In: CS Levings III, IK Vasil (eds) The molecular biology of plant mitochondria. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 1-59
-
(1995)
The Molecular Biology of Plant Mitochondria
, pp. 1-59
-
-
Wolstenholme, D.R.1
Fauron, C.M.R.2
-
50
-
-
0000177512
-
Mitochondrial genome structure of rice suspension culture from the cytoplasmic male-sterile line (A-58CMS): Reappraisal of the master circle
-
Yamato K, Ogura Y, Kanegae T, Yamada Y Ohyama K (1992) Mitochondrial genome structure of rice suspension culture from the cytoplasmic male-sterile line (A-58CMS): reappraisal of the master circle. Theor Appl Genet 83:279-288
-
(1992)
Theor Appl Genet
, vol.83
, pp. 279-288
-
-
Yamato, K.1
Ogura, Y.2
Kanegae, T.3
Yamada, Y.4
Ohyama, K.5
-
51
-
-
0027482829
-
Genes for ribosomal proteins S3, L16, L5 and S14 are clustered in the mitochondrial genome of Brassica napus L.
-
Ye F, Bernhardt J, Abel WO (1993) Genes for ribosomal proteins S3, L16, L5 and S14 are clustered in the mitochondrial genome of Brassica napus L. Curr Genet 24:323-329
-
(1993)
Curr Genet
, vol.24
, pp. 323-329
-
-
Ye, F.1
Bernhardt, J.2
Abel, W.O.3
|