-
2
-
-
0035132230
-
Anisotropy of fluctuation dynamics of proteins with an elastic network model
-
Atilgan, A. R., S. R. Durell, R. L. Jernigan, M. C. Demirel, O. Keskin, and I. Bahar. 2001. Anisotropy of fluctuation dynamics of proteins with an elastic network model. Biophys. J. 80:505-515.
-
(2001)
Biophys. J.
, vol.80
, pp. 505-515
-
-
Atilgan, A.R.1
Durell, S.R.2
Jernigan, R.L.3
Demirel, M.C.4
Keskin, O.5
Bahar, I.6
-
3
-
-
0001973964
-
Does the flagellar rotary motor step?
-
R. Goldman, T. Pollard, and J. Rosenbaum, editors. Cold Spring Harbor Laboratory, New York
-
Berg, H. C. 1976. Does the flagellar rotary motor step? In Cell Motility. R. Goldman, T. Pollard, and J. Rosenbaum, editors. Cold Spring Harbor Laboratory, New York. 47-56.
-
(1976)
Cell Motility
, pp. 47-56
-
-
Berg, H.C.1
-
4
-
-
0015897650
-
Bacteria swim by rotating their flagellar filaments
-
Berg, H. C., and R. A. Anderson. 1973. Bacteria swim by rotating their flagellar filaments. Nature. 245:380-382.
-
(1973)
Nature
, vol.245
, pp. 380-382
-
-
Berg, H.C.1
Anderson, R.A.2
-
6
-
-
0344091553
-
Motions and negative cooperativity between p97 domains revealed by cryo-electron microscopy and quantized elastic deformational model
-
Beuron, F., T. C. Flynn, J. Ma, H. Kondo, X. Zhang, and P. S. Freemont. 2003. Motions and negative cooperativity between p97 domains revealed by cryo-electron microscopy and quantized elastic deformational model. J. Mol. Biol. 327:619-629.
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 619-629
-
-
Beuron, F.1
Flynn, T.C.2
Ma, J.3
Kondo, H.4
Zhang, X.5
Freemont, P.S.6
-
7
-
-
0024514118
-
Compliance of bacterial flagella measured with optical tweezers
-
Block, S. M., D. F. Blair, and H. C. Berg. 1989. Compliance of bacterial flagella measured with optical tweezers. Nature. 338:514-518.
-
(1989)
Nature
, vol.338
, pp. 514-518
-
-
Block, S.M.1
Blair, D.F.2
Berg, H.C.3
-
8
-
-
0025819598
-
Compliance of bacterial polyhooks measured with optical tweezers
-
Block, S. M., D. F. Blair, and H. C. Berg. 1991. Compliance of bacterial polyhooks measured with optical tweezers. Cytometry. 12:92-496.
-
(1991)
Cytometry
, vol.12
, pp. 92-496
-
-
Block, S.M.1
Blair, D.F.2
Berg, H.C.3
-
9
-
-
0031008228
-
The ATP synthase: A splendid molecular machine
-
Boyer, P. D. 1997. The ATP synthase: a splendid molecular machine. Annu. Rev. Biochem. 66:717-749.
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 717-749
-
-
Boyer, P.D.1
-
10
-
-
0000885331
-
Harmonic analysis of large systems. I. Methodology
-
Brooks, B. R., D. Janezic, and M. Karplus. 1995. Harmonic analysis of large systems. I. Methodology. J. Comput. Chem. 16:1522-1542.
-
(1995)
J. Comput. Chem.
, vol.16
, pp. 1522-1542
-
-
Brooks, B.R.1
Janezic, D.2
Karplus, M.3
-
11
-
-
0037079578
-
Dynamics of large proteins through hierarchical levels of coarse-grained structures
-
Doruker, P., R. L. Jernigan, and I. Bahar. 2002. Dynamics of large proteins through hierarchical levels of coarse-grained structures. J. Comput. Chem. 23:119-127.
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 119-127
-
-
Doruker, P.1
Jernigan, R.L.2
Bahar, I.3
-
12
-
-
0035108284
-
Flexural and torsional stiffness in multi-jointed biological beams
-
Etnier, S. 2001. Flexural and torsional stiffness in multi-jointed biological beams. Biol. Bull. 200:1-8.
-
(2001)
Biol. Bull.
, vol.200
, pp. 1-8
-
-
Etnier, S.1
-
13
-
-
0003699033
-
-
Addison-Wesley, Reading, MA
-
Feynman, R. P., R. B. Leighton, and M. Sands. 1964. The Feynman Lectures on Physics. Addison-Wesley, Reading, MA.
-
(1964)
The Feynman Lectures on Physics
-
-
Feynman, R.P.1
Leighton, R.B.2
Sands, M.3
-
14
-
-
0015518565
-
Flexural rigidity of bacterial flagella studied by quasielastic scattering of laser light
-
Fujime, S., M. Maruyama, and S. Asakura. 1972. Flexural rigidity of bacterial flagella studied by quasielastic scattering of laser light. J. Mol. Biol. 68:347-359.
-
(1972)
J. Mol. Biol.
, vol.68
, pp. 347-359
-
-
Fujime, S.1
Maruyama, M.2
Asakura, S.3
-
15
-
-
0017835741
-
The proton pump is a molecular engine of motile bacteria
-
Glagolev, A. N., and V. P. Skulachev. 1978. The proton pump is a molecular engine of motile bacteria. Nature. 272:280-282.
-
(1978)
Nature
, vol.272
, pp. 280-282
-
-
Glagolev, A.N.1
Skulachev, V.P.2
-
16
-
-
0021412027
-
Vector quantization
-
Gray, R. M. 1984. Vector quantization. IEEE ASSP Mag. 1:4-29.
-
(1984)
IEEE ASSP Mag.
, vol.1
, pp. 4-29
-
-
Gray, R.M.1
-
18
-
-
0020536604
-
Elastic properties of bacterial flagellar filaments. I. Free rotation case
-
Hoshikawa, H. 1983. Elastic properties of bacterial flagellar filaments. I. Free rotation case. Biophys. Chem. 17:105-109.
-
(1983)
Biophys. Chem.
, vol.17
, pp. 105-109
-
-
Hoshikawa, H.1
-
19
-
-
0021961089
-
Elastic properties of bacterial flagellar filaments. II. Determination of the modulus of rigidity
-
Hoshikawa, H., and R. Kamiya. 1985. Elastic properties of bacterial flagellar filaments. II. Determination of the modulus of rigidity. Biophys. Chem. 22:159-166.
-
(1985)
Biophys. Chem.
, vol.22
, pp. 159-166
-
-
Hoshikawa, H.1
Kamiya, R.2
-
20
-
-
0018791734
-
Transition of bacterial flagella from helical to straight forms with different subunit arrangements
-
Kamiya, R., S. Asakura, K. Wakabayashi, and K. Namba. 1979. Transition of bacterial flagella from helical to straight forms with different subunit arrangements. J. Mol. Biol. 131:725-742.
-
(1979)
J. Mol. Biol.
, vol.131
, pp. 725-742
-
-
Kamiya, R.1
Asakura, S.2
Wakabayashi, K.3
Namba, K.4
-
21
-
-
0037666985
-
Conformational flexibility of pyruvate dehydrogenase complexes: A computational analysis by quantized elastic deformational model
-
Kong, Y., D. Ming, Y. Wu, J. K. Stoops, Z. H. Zhou, and J. Ma. 2003. Conformational flexibility of pyruvate dehydrogenase complexes: a computational analysis by quantized elastic deformational model. J. Mol. Biol. 330:129-135.
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 129-135
-
-
Kong, Y.1
Ming, D.2
Wu, Y.3
Stoops, J.K.4
Zhou, Z.H.5
Ma, J.6
-
22
-
-
0016219080
-
Chemomechanical coupling without ATP: The source of energy for motility and chemotaxis in bacteria
-
Larsen, S. H., J. Adler, J. J. Gargus, and R. W. Hogg. 1974. Chemomechanical coupling without ATP: the source of energy for motility and chemotaxis in bacteria. Proc. Natl. Acad. Sci. USA. 71:1239-1243.
-
(1974)
Proc. Natl. Acad. Sci. USA
, vol.71
, pp. 1239-1243
-
-
Larsen, S.H.1
Adler, J.2
Gargus, J.J.3
Hogg, R.W.4
-
23
-
-
1642365068
-
New advances in normal mode analysis of supermolecular complexes and applications to structural refinement
-
Ma, J. 2004. New advances in normal mode analysis of supermolecular complexes and applications to structural refinement. Curr. Protein Pept. Sci. 5:119-123.
-
(2004)
Curr. Protein Pept. Sci.
, vol.5
, pp. 119-123
-
-
Ma, J.1
-
25
-
-
0017704180
-
Normal-to-curly flagellar transitions and their role in bacterial tumbling. Stabilization of an alternative quaternary structure by mechanical force
-
Macnab, R. M., and M. K. Ornston. 1977. Normal-to-curly flagellar transitions and their role in bacterial tumbling. Stabilization of an alternative quaternary structure by mechanical force. J. Mol. Biol. 112:1-30.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 1-30
-
-
Macnab, R.M.1
Ornston, M.K.2
-
26
-
-
0022148098
-
Vector quantization in speech coding
-
Makhoul, J., S. Roucos, and H. Gish. 1985. Vector quantization in speech coding. Proc. IEEE 73:1551-1588.
-
(1985)
Proc. IEEE
, vol.73
, pp. 1551-1588
-
-
Makhoul, J.1
Roucos, S.2
Gish, H.3
-
27
-
-
0038684945
-
A protonmotive force drives bacterial flagella
-
Manson, M. D., P. Tedesco, H. C. Berg, F. M. Harold, and C. Van der Drift. 1977. A protonmotive force drives bacterial flagella. Proc. Natl. Acad. Sci. USA. 74:3060-3064.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 3060-3064
-
-
Manson, M.D.1
Tedesco, P.2
Berg, H.C.3
Harold, F.M.4
Van Der Drift, C.5
-
29
-
-
0029039662
-
The structure of the R-type straight flagellar filament of Salmonella at 9 Å resolution by electron cryomicroscopy
-
Mimori, Y., I. Yamashita, K. Murata, Y. Fujiyoshi, K. Yonekura, C. Toyoshima, and K. Namba. 1995. The structure of the R-type straight flagellar filament of Salmonella at 9 Å resolution by electron cryomicroscopy. J. Mol. Biol. 249:69-87.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 69-87
-
-
Mimori, Y.1
Yamashita, I.2
Murata, K.3
Fujiyoshi, Y.4
Yonekura, K.5
Toyoshima, C.6
Namba, K.7
-
30
-
-
0037173062
-
How to describe protein motion without amino acid sequence and atomic coordinates
-
Ming, D., Y. Kong, M. A. Lambert, Z. Huang, and J. Ma. 2002a. How to describe protein motion without amino acid sequence and atomic coordinates. Proc. Natl. Acad. Sci. USA. 99:8620-8625.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 8620-8625
-
-
Ming, D.1
Kong, Y.2
Lambert, M.A.3
Huang, Z.4
Ma, J.5
-
31
-
-
0037062479
-
Domain movements in human fatty acid synthase by quantized elastic deformational model
-
Ming, D., Y. Kong, S. J. Wakil, J. Brink, and J. Ma. 2002b. Domain movements in human fatty acid synthase by quantized elastic deformational model. Proc. Natl. Acad. Sci. USA. 99:7895-7899.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 7895-7899
-
-
Ming, D.1
Kong, Y.2
Wakil, S.J.3
Brink, J.4
Ma, J.5
-
32
-
-
0027402386
-
Domain organization of the subunit of the Salmonella typhimurium flagellar hook
-
Morgan, D. G., R. M. Macnab, N. R. Francis, and D. J. DeRosier. 1993. Domain organization of the subunit of the Salmonella typhimurium flagellar hook. J. Mol. Biol. 229:79-84.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 79-84
-
-
Morgan, D.G.1
Macnab, R.M.2
Francis, N.R.3
DeRosier, D.J.4
-
33
-
-
0029042213
-
Structure of bacterial flagellar filaments at 11 Å resolution: Packing of the alpha-helices
-
Morgan, D. G., C. Owen, L. A. Melanson, and D. J. DeRosier. 1995. Structure of bacterial flagellar filaments at 11 Å resolution: packing of the alpha-helices. J. Mol. Biol. 249:88-110.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 88-110
-
-
Morgan, D.G.1
Owen, C.2
Melanson, L.A.3
DeRosier, D.J.4
-
34
-
-
0001092535
-
The elastic moduli and mechanics of Populus tremuloides (Salicaceae) petioles in bending and torsion
-
Niklas, K. J. 1991. The elastic moduli and mechanics of Populus tremuloides (Salicaceae) petioles in bending and torsion. Am. J. Bot. 78:989-996.
-
(1991)
Am. J. Bot.
, vol.78
, pp. 989-996
-
-
Niklas, K.J.1
-
35
-
-
0015506131
-
Structure of straight flagella from a mutant Salmonella
-
O'Brien, E. J., and P. M. Bennett. 1972. Structure of straight flagella from a mutant Salmonella. J. Mol. Biol. 70:133-152.
-
(1972)
J. Mol. Biol.
, vol.70
, pp. 133-152
-
-
O'Brien, E.J.1
Bennett, P.M.2
-
36
-
-
85035274877
-
Role of body rotation in bacterial flagellar bundling
-
Powers, T. R. 2002. Role of body rotation in bacterial flagellar bundling. Phys. Rev. E. 65:040903.
-
(2002)
Phys. Rev. E
, vol.65
, pp. 040903
-
-
Powers, T.R.1
-
38
-
-
0035868953
-
Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling
-
Samatey, F. A., K. Imada, S. Nagashima, F. Vonderviszt, T. Kumasaka, M. Yamamoto, and K. Namba. 2001. Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling. Nature. 410:331-337.
-
(2001)
Nature
, vol.410
, pp. 331-337
-
-
Samatey, F.A.1
Imada, K.2
Nagashima, S.3
Vonderviszt, F.4
Kumasaka, T.5
Yamamoto, M.6
Namba, K.7
-
39
-
-
0016351193
-
Flagellar rotation and the mechanism of bacterial motility
-
Silverman, M., and M. Simon. 1974. Flagellar rotation and the mechanism of bacterial motility. Nature. 249:73-74.
-
(1974)
Nature
, vol.249
, pp. 73-74
-
-
Silverman, M.1
Simon, M.2
-
40
-
-
0036382958
-
Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory
-
Tama, F., W. Wriggers, and C. L. Brooks, III. 2002. Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory. J. Mol. Biol. 321:297-305.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 297-305
-
-
Tama, F.1
Wriggers, W.2
Brooks III, C.L.3
-
41
-
-
0000197372
-
Large amplitude elastic motions in proteins from a single-parameter, atomic analysis
-
Tirion, M. M. 1996. Large amplitude elastic motions in proteins from a single-parameter, atomic analysis. Phys. Rev. Lett. 77:1905-1908.
-
(1996)
Phys. Rev. Lett.
, vol.77
, pp. 1905-1908
-
-
Tirion, M.M.1
-
42
-
-
0027096192
-
The rigidity of bacterial flagellar filaments and its relation to filament polymorphism
-
Trachtenberg, S., and I. Hammel. 1992. The rigidity of bacterial flagellar filaments and its relation to filament polymorphism. J. Struct. Biol. 109:18-27.
-
(1992)
J. Struct. Biol.
, vol.109
, pp. 18-27
-
-
Trachtenberg, S.1
Hammel, I.2
-
43
-
-
0000188578
-
Twist-to-bend ratios and cross-sectional shapes of petioles and stems
-
Vogel, S. 1992. Twist-to-bend ratios and cross-sectional shapes of petioles and stems. J. Exp. Bot. 43:1527-1532.
-
(1992)
J. Exp. Bot.
, vol.43
, pp. 1527-1532
-
-
Vogel, S.1
-
44
-
-
0042238051
-
Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy
-
Yonekura, K., S. Maki-Yonekura, and K. Namba. 2003. Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy. Nature. 424:643-650.
-
(2003)
Nature
, vol.424
, pp. 643-650
-
-
Yonekura, K.1
Maki-Yonekura, S.2
Namba, K.3
|