Assessment of AFLP-based genetic variation in the populations of Picea asperata

Silvae Genetica

Volumn 54, Issue 1, 2005, Pages 24-30

  Xue, X ^a,b   Wang, Y ^a,b   Korpelainen, H ^c   Li, C ^a  

^a CHENGDU INSTITUTE OF BIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c UNIVERSITY OF HELSINKI   (Finland)

Author keywords

AFLP markers; Genetic diversity; Genetic structure; Picea asperata Mast.

Indexed keywords

ECOLOGY; FORESTRY; GENES; GENETIC ENGINEERING;

AFLP MARKERS; GENETIC DIFFERENTIATION; POPULATION GENETIC STRUCTURE; SHANNON'S INDICES;

BIODIVERSITY;

BIODIVERSITY; ECOLOGY; GENES; GENETIC ENGINEERING; PICEA ASPERATA;

PICEA; PICEA ASPERATA;

EID: 21344455940     PISSN: 00375349     EISSN: None     Source Type: Journal    
DOI: 10.1515/sg-2005-0004     Document Type: Article

References (53)

1. BARRETT, S. C. and H. J. R. KOHN (1991): Genetics and evolutionary consequences of small population size in plants: implications for conservation. In: Genetics and conservation of rare plants, Falk, D. A. and Holsinger, K. E. (eds.). Oxford University Press, pp. 3-30.
2. BASSAM, B. J., K. CAETANO-ANOLLES and P. M. GRESSHOFF (1991): Fast and sensitive silver straining of DNA in polyacrylamide gels. Ann. Biochem. 196: 80-83.
3. BROADHURST, L. and D. COATES (2002): Genetic diversity within and divergence between rare and geographically widespread taxa of the Acacia acuminata (Mimosaceae) complex. Heredity 88: 250-257.
4. BROWN, A. H. D., M. T. CLEGG, A. L. KAHLER and B. S. WEIR (1990): Plant population genetics, breeding, and genetic resources. Sinauer Associates, Sunderland, Massachusetts.
5. DIAZ, O., G. L. SUN, B. SALOMON and R. VON BOTHMER (2000): Levels and distribution of allozyme and RAPD variation in populations of Elymus fibrosus (Schrenk) Tzvel. (Poaceae). Genet. Res. Crop Evol. 47: 11-24.
6. DIAZ, V., L. M. MUNIZ and E. FERRER (2001): Random amplified polymorphic DNA and amplified fragment length polymorphism assessment of Pinus oocarpa. Mol. Ecol. 10: 2593-2604.
7. DOYLE, J. J. and J. L. DOYLE (1987): A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
8. ELLSTRAND, N. C. D. and R. ELAM (1993): Population genetic consequences of small population size: implications for plant conservation. Annu. Rev. Ecol. Syst. 24: 217-242.
9. ESTELLE, L. and E. S. ALFRED (1999): Properties of AFLP markers in inheritance and genetic diversity studies of Pinus sylvestris L. Heredity 82: 252-260.
10. EXCOFFIER, L. (1993): Analysis of molecular variances (AMOVA). Version 1.5. Genetics and Biometry Laboratory, University of Geneva.
11. GITZENDANNER, M. A. and P. S. SOLTIS (2000): Patterns of genetic variation in rare and widespread plant congeners. Am. J. Bot. 87: 777-786.
12. HAMRICK, J. L. and M. J. W. GODT (1989): Allozyme diversity in plant species. In: Plant population genetics, breeding, and genetic resources, BROWN, A. H. D., CLEGG, M. T., KAHLER, A. L. and WEIR, B. S. (eds). Sinauer Assoc, Sunderland, Mass., pp. 43-63.
13. HAMRICK, J. L., M. J. W. GODT and S. L. SHERMAN-BROYLES (1992): Factors influencing levels of genetic diversity in woody plant species. New For. 6: 95-124.
14. JONES, C. J., K. J. EDWARDS and S. CASTIGLIONE (1998): Reproducibility testing of AFLPs by a network of European laboratories. In: Molecular tools for screening biodiversity, KARP, A., ISAAC, P. G. and INGRAM, D. S. (eds). Chapman and Hall, London, pp. 191-192.
15. KARRON, J. D. (1987): A comparison of levels of genetic polymorphism and self-compatibility in geographically restricted and widespread plant congeners. Evol. Ecol. 1: 47-58.
16. KARRON, J. D. (1991): Patterns of genetic variation and breeding systems in rare plant species. In: Genetics and conservation of rare plants, FALK, D. A. and HOLSINGER, K. E. (eds). Oxford University Press, pp. 87-98.
17. KIMURA, M. and J. CROW (1964): The number of alleles that can be maintained in a finite population. Genetics 49: 725-738.
18. LERCETEAU, E. and A. E. SZMIDT (1999): Properties of AFLP markers in inheritance and genetic diversity studies of Pinus sylvestris L. Heredity 82: 252-260.
19. LEWONTIN, R. C. (1972): The apportionment of human diversity. Evol. Biol. 6: 381-398.
20. LIU, Z., J. FANG and S. PIAO (2002): Geographical distribution of species in Genera Abies, Picea and Larix in China. Acta Geographica Sinica 57: 577-586.
21. LUO, J., Y. WANG, H. KORPELAINEN and C. LI (2005): Allozyme variation in natural populations of Picea asperata. Silva Fennica 39(2).
22. MAGUIRE, T. L., R. PEAKALL and P. SAENGER (2002): Comparative analysis of genetic diversity in the mangrove species Avicennia marina (Forsk.) Vierh. (Avicenniaceae) detected by AFLPs and SSRs. Theor. Appl. Genet. 104: 388-398.
23. MANTEL, N. (1967): The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220.
24. MARGARET, B. (2002): Phylogenetics and the conservation and utilization of Acacia in Western Australia. Conserv. Sci. W. Aust. 4(3): 10-18.
25. MARIETTE, S., D. CHAGNE, C. LEZIER, P. PASTUSZKA, A. RAFFIN, C. PLOMION and A. KREMER (2001): Genetic diversity within and among Pinus pinaster populations: comparison between AFLP and microsatellite markers. Heredity 86: 469-479.
26. MCDERMOTT, J. M. and B. A. MCDONALD (1993): Gene flow in plant pathosystems. Annu. Rev. Phytopathol. 31: 353-373.
27. NEI, M. (1973): The theory and estimation of genetic distances. In: Genetic structure of populations, MORTON, N. E. (ed.). University of Hawaii Press, Honolulu.
28. NEI, M. (1978): Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
29. NYBOM, H. (2004): Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol. Ecol. 13 (5): 1143-1155.
30. PALACIOS, C., S. KRESOVICH and F. GONZ·LEZ-CANDELAS (1999): A population genetic study of the endangered plant species Limonium dufourii (Plumbaginaceae) based on amplified fragment length polymorphism (AFLP). Mol. Ecol. 8: 645-657.
31. PEAKALL, R. and P. E. SMOUSE (2001): GENALEX V5: Genetic Analysis in Excel. Population Genetic Software for Teaching and Research. Australian National University, Canberra, Australia. Http://www.anu.edu.au/BoZo/GenALEx/.
32. PEJIC, I., P. AJMONE-MARSAN and M. MORGANTE (1998): Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs and AFLPs. Theor. Appl. Genet. 97: 1248-1255.
33. POWELL, W., M. MORGANTE, C. ANDRE, M. HANAFEY, J. VOGEL, S. TINGEY and A. RAFALSKI (1996): The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2: 225-238.
34. REHFEKDT, G. E. (1988): Ecological genetics of Pinus contorta from the Rocky Mountains (USA): a synthesis. Silvae Genet. 37: 131-135.
35. ROA, A. C., M. M. MAYA, M. C. DUQUE, J. TOHME, A. C. ALLEM and M. W. BONIERBALE (1997): AFLP analysis of relationships among cassava and other Manihot species. Theor. Appl. Genet. 95: 741-750.
36. SCHOEN, D. J. and A. H. D. BROWN (1991): Intraspecific variation in population gene diversity and effective population size correlates with the mating system in plants. Proc. Nat. Acad. Sci., USA 88: 4494-4497.
37. SHRESTHA, M. K., A. G. GOLDHIRSH and D. WARD (2002): Population genetic structure and the conservation of insolated populations of Acacia raddiana in the Negev Desert. Biol. Conserv. 108: 119-127.
38. SLATKIN, M. (1985): Gene flow in natural populations. Ann. Rev. Ecol. Syst. 16: 393-430.
39. SLATKIN, M. (1987): Gene flow and the geographic structure of natural populations. Science 236: 787-792.
40. THOMAS, B. R., S. E. MACDONALD, M. HICKS, D. L. ADAMS and R. B. HODGETTS (1999): Effects of reforestation methods on genetic diversity of lodgepole pine: as assessment using microsatellite and randomly amplified polymorphic DNA markers. Theor. Appl. Genet. 98: 793-801.
41. TRAVIS, S. E., J. MASCHINSKI and P. KEIM (1996): An analysis of genetic variation in Astragalus cremnophylax var. cremnophylax, a critically endangered plant, using AFLP markers. Mol. Ecol. 5: 735-745.
42. TURPEINEN, T., T. VANHALA, E. NEVO and E. NISSILA (2003): AFLP genetic polymorphism in wild barley (Hordeum spontaneum) populations in Israel. Theor. Appl. Genet. 106: 1333-1339.
43. VOS, P., R. HOGERS, M. BLEEKER, M. REIJANS, T. LEE, M. HORNES, A. FRIJTERS, J. POT, J. PELEMAN, M. KUIPER and M. ZABEAU (1995): AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.
44. WACHIRA, F., J. TANAKA and Y. TAKEDA (2001): Genetic variation and differentiation in tea (Camellia sinensis) germplasm revealed by RAPD and AFLP variation. J. Hort. Sci. Biotech. 76: 557-563.
45. WANG, X. R., V. E. CHHATRE, M. C. NILSSON, W. SONG, O. ZACKRISSON and A. E. SZMIDT (2003): Island Population Structure of Norway Spruce (Picea Abiles) in Northern Sweden. Inter. J. Plant Sci. 164(5): 711-717.
46. WANG, Y., J. LUO, X. XUE, H. KORPELAINEN and C. LI (2005): Diversity of microsatellite markers in the populations of Picea asperata originating from the mountains of China. Plant Sci. 168: 707-714.
47. WRIGHT, S. (1977): Evolution and the Genetics of Populations. Vol. 3: Experimental Results and Evolutionary Deductions. University of Chicago Press, Chicago.
48. WU, Z. (1959): The distribution of major tree species in alpine forest area of western Sichuan and some proposals for regeneration report and planning of tree species for plantation. Scientia Silvae Sinicae 5: 465-478.
49. WU, Z. Y. and P. H. RAVEN (1994): Flora of China, Volume 4. Science Press (Beijing, P. R. China) & Missouri Botanical Garden (St. Louis, USA).
50. YEH, F. C., W. M. CHELIAK, B. P. DANCIK, K. ILLINGWORTH, D. C. TRUST and B. A. PRYHITKA (1985): Pinus contorta ssp. Latifolia: a discriminant analysis of allozyme variation. Can. J. Genet. Cytol. 27: 210-218.
51. YEH, F. C., R. C. YANG, T. B. J. BOYLE, Z. H. YE and J. X. MAO (1997): POPGENE, the user-friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Center, University of Alberta, Edmonton, Alberta, Canada.
52. YOUNG, W. P., J. M. SCHUPP and P. KEIM (1999): DNA methylation and AFLP marker distribution in the soybean genome. Theor. Appl. Genet. 99: 785-790.
53. ZAWKO, G., S. L. KRAUSS, K. W. DIXON and K. SIVASITHAMPARAM (2001): Conservation genetics of the rare and endangered Leucopogon obtectus (Ericaceae). Mol. Ecol. 10: 2389-2396.