Effects of reforestation methods on genetic diversity of lodgepole pine: An assessment using microsatellite and randomly amplified polymorphic DNA markers

Theoretical and Applied Genetics

Volumn 98, Issue 5, 1999, Pages 793-801

  Thomas, B R ^a   Macdonald, S E ^a   Hicks, M ^a   Adams, D L ^a   Hodgetts, R B ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

DNA analyses; Gene conservation; Pinus contorta; RAPD; Reforestation; Silviculture; SSR

Indexed keywords

ALLELE; GENE FREQUENCY; GENE LOCUS; GENETIC CORRELATION; GENETIC DISTANCE; GENETIC DIVERSITY; HETEROZYGOSITY; ISOENZYME; MICROSATELLITE DNA; RANDOM AMPLIFIED POLYMORPHIC DNA; REFORESTATION; REGENERATION; SIMPLE SEQUENCE REPEAT;

PINUS CONTORTA;

EID: 0032926097     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220051136     Document Type: Article

References (69)

1. Alberta Environmental Protection (1994) Natural regions and subregions of Alberta. 1:1,000,000 scale map. Land Information Services, Edmonton, Alberta
2. Boyle TJB (1992) Biodiversity of Canadian forests: current status and future challenges. For Chron 68:444-453
3. Brown AHD (1978) Isozymes, plant population genetic structure and genetic conservation. Theor Appl Genet 52:145-157
4. Bucci G, Menozzi P (1995) Genetic variation of RAPD markers in a Picea abies Karst. population. Heredity 75:188-197
5. Bucci G, Vendramin GG, Lelli L, Vicario F (1997) Assessing the genetic divergence of Pinus leucodermis Ant. endangered populations: use of molecular markers for conservation purposes. Theor Appl Genet 95:1138-1146
6. Buchert GP, Rajora OP, Hood JV, Dancik BP (1997) Effects of harvesting on genetic diversity in old-growth eastern white pine in Ontario, Canada. Conserv Biol 11:747-758
7. Bush RM, Smouse PE (1992) Evidence for the adaptive significance of allozymes in forest trees. New For 6:179-196
8. Byrne M, Marquez-Garcia MI, Uren T, Smith DS, Moran GF (1996) Conservation and genetic diversity of microsatellite loci in the genus Eucalyptus. Aust J Bot 44:331-341
9. Campbell RK, Sorensen FC (1984) Genetic implications of nursery practices. In: Duryea ML, Landis TD (eds) Forest nursery manual: production of bareroot seedlings. Martinus Nijhoff/ Dr. W. Junk, Dordrecht The Hague, pp 183-191
10. Dancik BP, Yeh FC (1983) Allozyme variability and evolution of lodgepole pine (Pinus contorta var 'latifolia') and jack pine (Pinus banksiana) in Alberta. Can J Genet Cytol 25:57-64
11. n microsatellites in the bur oak, Quercus macrocarpa. Theor Appl Genet 91:137-141
12. Echt CS, May-Marquardt P, Hseih M, Zahorchak R (1996) Characterization of microsatellite markers in eastern white pine. Genome 39:1102-1108
13. El-Kassaby YA, Ritland K (1996) Genetic variation in low elevation Douglas-fir of British Columbia and its relevance to gene conservation. Biodiversity Cons 5:779-794
14. El-Kassaby YA, Thomson AJ (1996) Parental rank changes associated with seed biology and nursery practices in Douglas-fir. For Sci 42:228-235
15. Epperson BK (1990) Spatial patterns of genetic variation within plant populations. In: Brown AHD, Clegg MT, Kahler AL, Weir BS (eds) Plant population genetics, breeding, and genetic resources. Sinauer, Sunderland, Mass., pp 254-278
16. Epperson BK, Allard RW (1989) Spatial autocorrelation analysis of the distribution of genotypes within populations of lodgepole pine. Genetics 121:369-377
17. Frankel OH, Bennett E (1970) Genetic resources in plants - their exploitation and conservation. Blackwell Scientific Publ, Oxford
18. Gömöry D (1992) Effects of stand origin on the genetic diversity of Norway spruce (Picea abies Karst.) populations. For Ecol Mgmt 54:215-223
19. Curies R, Ledig FT (1981) Genetic structure of populations and differentiation in forest trees. In: Conkle MT (ed) Proc Symp Isozymes N Am For Trees For Insects. US Dep Agric-For Ser Pac Southwest For Range Exp Stn Gen Tech Rep PSW-48, pp 42-47
20. Hamann A, Zink D, Nagl W (1995) Microsatellite fingerprinting in the genus Phaseolus. Genome 38:507-515
21. Hamrick JL, Godt MJW (1989) Allozyme diversity in plant species. In: Brown AHD, Clegg MT, Kahler AL, Weir BS (eds) Plant population genetics, breeding and genetic resources. Sinauer Assoc, Sunderland, Mass., pp 43-63
22. Harlan JR (1975) Our vanishing genetic resources. Science 188: 618-621
23. Hartl DL, Clark AG (1989) Principles of population genetics, 2nd edn. Sinauer Assoc, Sunderland, Mass.
24. Haymer DS (1994) Random amplified polymorphic DNAs and microsatellites: what are they, and can they tell us anything we don't already know? Ann Entomol Soc Am 87:717-722
25. Hicks M (1997) Impacts of forest management on genetic diversity of lodgepole pine in Alberta. MSc. thesis, Department of Biological Sciences, University of Alberta, Edmonton
26. Hicks M, Adams D, O'Keefe S, Macdonald E, Hodgetts R (1998) The development of RAPD and microsatellite markers in lodgepole pine (Pinus contorta var 'latifolia'). Genome 41:797-805
27. Huff DR, Peakall R, Smouse PE (1993) RAPD variation within and among natural populations of outcrossing buffalograss [Buchloc̈ dactyloides (Nutt) Engelm.]. Theor Appl Genet 86:927-934
28. Illingworth K (1976) Inter-and intra-provenance variation in heights of three year old Pinus contorta Dougl. In: Line R (ed) Pinus contorta provenance studies. For Comm Res Dev Pap No. 114, pp 98-106
29. Isabel N, Beauliu J, Bousquet J (1995) Complete congruence between gene diversity estimates derived from genotypic data at enzyme and random amplified polymorphic DNA loci in black spruce. Proc Natl Acad Sci USA 92:6369-6373
30. Jasso JM (1970) Impact of silviculture on forest gene resources. Unasylva 24:70-75
31. Khasa PD, Dancik BP (1996) Rapid identification of white-Engelmann spruce species by RAPD markers. Theor Appl Genet 92:46-52
32. Knowles P (1985) Comparison of isozyme variation among natural stands and plantations: jack pine and black spruce. Can J For Res 15:902-908
33. Knowles P (1991) Spatial genetic structure within two natural stands of black spruce (Picea mariana (Mill.) B.S.P.). Silvae Genet 40: 13-19
34. Ledig FT (1992) Human impacts on genetic diversity in forest ecosystems. Oikos 63:87-108
35. Libby WJ, Stettler RF, Seitz FW (1969) Forest genetics and forest-tree breeding. Annu Rev Genet 3:469-494
36. Linhart YB, Mitton JB, Sturgeon KB, Davis ML (1981) Genetic variation in space and time in a population of ponderosa pine. Heredity 46:407-426
37. Liu Z, Knowles P (1991) Pattern of allozyme variation in tamarack (Larix lancina) from northern Ontario. Can J Bot 69:2468-2474
38. Marshall DR, Brown AHD (1975) Optimum sampling strategies in genetic conservation. In: Frankel OH, Hawkes JG (eds) Crop genetic resources for today and tomorrow. Cambridge University Press, London, pp 53-80
39. Maughan PJ, Saghai Maroof MA, Buss GR (1995) Microsatellite and amplified sequence length polymorphisms in cultivated and wild soybean. Genome 38:715-723
40. Mitton JB (1994) Molecular approaches to population biology. Annu Rev Ecol Syst 25:45-69
41. Mitton JB, Knowles P, Sturgeon KB, Linhart YB, Davis ML (1981) Association between heterozygosity and growth rate variables in three western forest trees. In: Conkle MT (ed) Proc Symp Isozymes N Am For Trees For Insects. US Dep Agric-For Ser Pac Southwest For Range Exp Stn Gen Tech Rep PSW-48, pp 27-34
42. Mörchen M, Cuguen J, Michaelis G, Hänni C, Saumitou-Laprade P (1996) Abundance and length polymorphism of microsatellite repeats in Beta vulgaris L. Theor Appl Genet 92:326-333
43. Morgante M, Rafalski A, Biddle P, Tingey S, Olivieri AM (1994) Genetic mapping and variability of seven soybean simple sequence repeat loci. Genome 37:763-769
44. Muona O, Harju A, Karkkainen K (1988) Genetic comparison of natural and nursery grown seedlings of Pinus sylvestris using allozymes. Scand J For Res 3:37-46
45. Namkoong G (1992) Biodiversity - issues in genetics, forestry and ethics. For Chron 68:438-443
46. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590
47. Paetkau D, Waits LP, Clarkson PL, Craighead L, Strobeck C (1997) An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations. Genetics 147: 1943-1957
48. Pfeiffer A, Olivieri AM, Morgante M (1997) Identification and characterization of microsatellites in Norway spruce (Picea abies K.). Genome 40:411-419
49. Rehfeldt GE (1988) Ecological genetics of Pinus contorta from the Rocky Mountains (USA): a synthesis. Silvae Genet 37:131-135
50. Richardson SD (1970) Gene pools in forestry. In: Frankel OH, Bennett E (eds) Genetic resources in plants - their exploitation and conservation. Blackwell Scientific, Oxford, pp 353-365
51. Rogers DL, Ledig FT (1996) The status of temperate North American forest genetic resources. Report No. 16. Genetic Resources Conservation Program, University of California, Davis, Calif.
52. Silen R, Osterhaus C (1979) Reduction of genetic base by sizing of bulked Douglas-fir seed lots. Tree Plant Notes 30:24-30
53. Skroch PW, Nienhuis J (1995) Qualitative and quantitative characterization of RAPD variation among snap bean (Phaseolus vulgaris) genotypes. Theor Appl Genet 91:1078-1085
54. Smith DN, Devey ME (1994) Occurrence and inheritance of microsatellites in Pinus radiata. Genome 37:977-983
55. Sproule AT, Dancik BP (1996) The mating system of black spruce in north-central Alberta, Canada. Silvae Genet 45:159-164
56. Stoehr MU, El-Kassaby YA (1997) Levels of genetic diversity at different stages of the domestication cycle of interior spruce in British Columbia. Theor Appl Genet 94:83-90
57. Tabachnick BG, Fidell LS (1989) Using multivariate statistics, 2nd edn. Harper Collins Publ, New York
58. Ter Braak CJF (1988) CANOCO - a FORTRAN program for canonical community ordination by partial detrended canonical correspondence analysis, principle components analysis and redundancy analysis (ver 2.1). Groep Landbouwwiskunde Technical report: LWA-88-02, Wageningen, The Netherlands
59. Tigerstedt PMA, Rudin D, Niemelä T, Tammisola J (1982) Composition and neighbouring effect in a naturally regenerating population of Scots pine. Silva Fenn 16:122-129
60. Van den ven WTG, McNicol RJ (1995) The use of RAPD markers for the identification of Sitka spruce (Picea sitchensis) clones. Heredity 75:126-132
61. Wang ZM, Macdonald SE (1992) Peatland and upland black spruce populations in Alberta, Canada: isozyme variation and seed germination ecology. Silvae Genet 41:117-122
62. Weir BS (1990) Genetic data analysis. Sinauer Assoc, Sunderland, Mass.
63. Yang R-C, Yeh FC (1995) Patterns of gene flow and geographic structure in Pinus contorta Dougl. For Genet 2:65-75
64. ST. Genetics 142:1045-1052
65. Yeh FC (1981) Analyses of gene diversity in some species of conifer. In: Conkle MT (ed) Proc Symp Isozymes N Am For Trees For Insects. US Dep Agric-For Ser Pac Southwest For Range Exp Stn Gen Tech Rep PSW-48, pp 48-52
66. Yeh FC, Layton C (1979) The organization of genetic variability in central and marginal populations of lodgepole pine Pinus contorta ssp. latifolia. Can J Genet Cytol 21:487-503
67. Yeh FC, Cheliak WM, Dancik BP, Illingworth K, Trust DC, Pryhitka BA (1985) Population differentiation in lodgepole pine, Pinus contorta spp. latifolia: a discriminant analysis of allozyme variation. Can J Genet Cytol 27:210-218
68. Yeh FC, Yang R-C, Boyle T, Ye BJ, Mao J (1997) POPGENE, the user-friendly shareware for population genetic analysis. Agric-Food and Forestry Molecular Biology Centre, University of Alberta, Canada
69. Ying CC, Illingworth K, Carlson M (1984) Geographic variation in lodgepole pine and its implications for tree improvement in British Columbia. In: Baumgartner DM, Krebill RG, Arnott JT, Weetman GF (eds) Lodgepole pine the species and its management. (Symposium Proceedings). Washington State Univ Co-op Extension Service, pp 45-53