The dynamic stress responses to area change in planar lipid bilayer membranes

Biophysical Journal

Volumn 88, Issue 2, 2005, Pages 1104-1119

  Jeon, Jonggu ^a   Voth, Gregory A ^a  

^a UNIVERSITY OF UTAH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIMER; LIPID; DIMYRISTOYLPHOSPHATIDYLCHOLINE;

ANISOTROPY; ARTICLE; LIPID BILAYER; LIPID MEMBRANE; MODEL; MOLECULAR DYNAMICS; OSCILLATION; SIMULATION; STRESS; STRESS STRAIN RELATIONSHIP; THICKNESS; VISCOELASTICITY; ARTIFICIAL MEMBRANE; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; ELASTICITY; KINETICS; MECHANICAL STRESS; MEMBRANE FLUIDITY; METHODOLOGY; MOTION; OSCILLOMETRY; STATISTICAL MODEL; STIMULATION; SURFACE TENSION;

DIMYRISTOYLPHOSPHATIDYLCHOLINE; ELASTICITY; KINETICS; LINEAR MODELS; LIPID BILAYERS; MEMBRANE FLUIDITY; MEMBRANES, ARTIFICIAL; MODELS, CHEMICAL; MODELS, MOLECULAR; MODELS, STATISTICAL; MOTION; OSCILLOMETRY; PHYSICAL STIMULATION; STRESS, MECHANICAL; SURFACE TENSION;

EID: 21244455155     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.104.052183     Document Type: Article

References (53)

1. Almeida, P. F. F., and W. L. C. Vaz. 1995. Lateral diffusion in membranes. In Structure and Dynamics of Membranes, from Cells to Vesicles. Vol. 1 of Handbook of Biological Physics. R. Lipowsky and E. Sackmann, editors. Elsevier, Amsterdam. 305-357.
2. Ayton, G., A. M. Smondyrev, S. G. Bardenhagen, P. McMurtry, and G. A. Voth. 2002. Calculating the bulk modulus for a lipid bilayer with nonequilibrium molecular dynamics simulation. Biophys. J. 82:1226-1238.
3. Ayton, G., and G. A. Voth. 2002. Bridging microscopic and mesoscopic simulations of lipid bilayers. Biophys. J. 83:3357-3370.
4. Bloom, M., E. Evans, and O. G. Mouritsen. 1991. Physical properties of the fluid lipid-bilayer component of cell membranes: a perspective. Q. Rev. Biophys. 24:293-397.
5. 13C NMR relaxation time measurements. Proc. Natl. Acad. Sci. USA. 80:4325-4329.
6. Chaikin, P. M., and T. C. Lubensky. 2000. Principles of Condensed Matter Physics. Cambridge University Press, Cambridge, UK.
7. Cornell, W. D., P. Cieplak, C. I. Bayly, I. R. Could, K. M. Merz, Jr., D. M. Ferguson, D. C. Spellmeyer, T. Fox, J. W. Caldwell. and P. A. Kollman. 1995. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J. Am. Chem. Soc. 117:5179-5197.
8. de Gennes, P. G. 1969. Conjectures about the smectic state. J. Phys. France Colloq. 30:C4-65-71.
9. de Gennes, P. G., and J. Prost. 1993. The Physics of Liquid Crystals, 2nd ed. Oxford University Press, Oxford, UK.
10. Dimova, R., B. Pouligny, and C. Dietrich. 2000. Pretransitional effects in dimyristoylphosphatidylcholine vesicle membranes: optical dynamometry study. Biophys. J. 79:340-356.
11. Doi, M., and S. F. Edwards. 1986. The Theory of Polymer Dynamics. Oxford University Press, Oxford, UK.
12. Dufourc, E. J., C. Mayer, J. Stohrer, G. Althoff, and G. Kothe. 1992. Dynamics of phosphate head groups in biomembranes. Biophys. J. 61:42-57.
13. El-Sayed, M. Y., T. A. Guion, and M. D. Fayer. 1986. Effect of cholesterol on viscoelastic properties of dipalmitoylphosphatidylcholine multi-bilayers as measured by a laser-induced ultrasonic probe. Biochemistry. 25:4825-4832.
14. Evans, D. J., and B. L. Holian. 1985. The Nose-Hoover thermostat. J. Chem. Phys. 83:4069-4074.
15. Evans, D. J., and G. P. Morriss. 1990. Statistical Mechanics of Nonequilibrium Liquids. Academic Press, New York.
16. Evans, E., and D. Needham. 1987. Physical properties of surfactant bilayer membranes: thermal transitions, elasticity, rigidity, cohesion, and colloidal interactions. J. Phys. Chem. 91:4219-4228.
17. Evans, E.,4 and A. Yeung. 1989. Apparent viscosity and cortical tension of blood granulocytes determined by micropipet aspiration. Biophys. J. 56:151-160.
18. Evans, E. A., and R. M. Hochmuth. 1978. Mechanochemical properties of membranes. In Membrane Properties: Mechanical Aspects. Receptors, Energetics and Calcium-Dependence of Transport, Vol. 10 of Current Topics in Membranes and Transport. F. Bronner and A. Kleinzeller, editors. Academic Press, New York. 1-64.
19. Fung, Y. C. 1993. Biomechanics: Mechanical Properties of Living Tissues, 2nd ed. Springer, New York.
20. Garbow, B. S., K. E. Hillstrom, and J. J. More. 1980. Minpack Project, Argonne National Laboratory, Argonne, IL. http://www.netlib.org/minpack/.
21. Goetz, R., and R. Lipowsky. 1998. Computer simulations of bilayer membranes: self-assembly and interfacial tension. J. Chem. Phys. 108:7397-7409.
22. Goodwin, J. W., and R. W. Hughes. 2000. Rheology for Chemists: An Introduction, Royal Society of Chemistry. Cambridge, UK.
23. Guo, G.-J., and Y.-G. Zhang. 2001. Equilibrium molecular dynamics calculation of the bulk viscosity of liquid water. Mol. Phys. 99:283-289.
24. Henriksen, J. R., and J. H. Ipsen. 2004. Measurement of membrane elasticity by micro-pipette aspiration. Eur. Phys. J. E. Soft Matter. 14:149-167.
25. Hoover, W. G., D. J. Evans, R. B. Hickman, A. J. C. Ladd, W. T. Ashurst, and B. Moran. 1980a. Lennard-Jones triple-point bulk and shear viscosities. Green-Kubo theory, Hamiltonian mechanics, and nonequilibrium molecular dynamics. Phys. Rev. A. 22:1690-1697.
26. Hoover, W. G., A. J. C. Ladd, R. B. Hickman, and B. L. Holian. 1980b. Bulk viscosity via nonequilibrium and equilibrium molecular dynamics. Phys. Rev. A. 21:1756-1760.
27. Jeon, J., A. E. Lefohn, and G. A. Voth. 2003. An improved Polarflex water model. J. Chem. Phys. 118:7504-7518.
28. Jorgensen, W. L., J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935.
29. Koenig, B. W., H. H. Strey, and K. Gawrisch. 1997. Membrane lateral compressibility determined by NMR and x-ray diffraction: effect of acyl chain polyunsaturation. Biophys. J. 73:1954-1966.
30. LePesant, J.-P., L. Powers, and P. S. Pershan. 1978. Brillouin light scattering measurement of the elastic properties of aligned multilamella lipid samples. Proc. Natl. Acad. Sci. USA. 75:1792-1795.
31. Lide, D. R., editor. 2002. CRC Handbook of Chemistry and Physics, 83rd ed. CRC Press, Cleveland, OH.
32. Lindahl, E., and O. Edholm. 2000. Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations. Biophys. J. 79:426-433.
33. Lindahl, E., and O. Edholm. 2001. Molecular dynamics simulation of NMR relaxation rates and slow dynamics in lipid bilayers. J. Chem. Phys. 115:4938-4950.
34. Martin, P. C., O. Parodi, and P. S. Pershan. 1972. Unified hydrodynamic theory for crystals, liquid crystals, and normal fluids. Phys. Rev. A. 6:2401-2420.
35. Mashl, R. J., H. L. Scott, S. Subramaniam, and E. Jakobsson. 2001. Molecular simulation of dioleoylphosphatidylcholine lipid bilayers at differing levels of hydration. Biophys. J. 81:3005-3015.
36. Melchionna, S., G. Ciccotti, and B. L. Holian. 1993. Hoover NPT dynamics for systems varying in shape and size. Mol. Phys. 78:533-544.
37. Mendelsohn, R., and R. G. Snyder. 1996. Infrared spectroscopic determination of conformational disorder and microphase separation in phospholipid acyl chains. In Biological Membranes: A Molecular Perspective from Computation and Experiment. K. M. Merz and B. Roux, editors. Birkhäuser, Boston. 145-174.
38. Nagle, J. F., and S. Tristram-Nagle. 2000. Structure of lipid bilayers. Biochim. Biophys. Acta. 1469:159-195.
39. Nallet, F., D. Roux, and J. Prost. 1989. Dynamic light scattering study of dilute lamellar phases. Phys. Rev. Lett. 62:276-279.
40. Nevzorov, A. A., T. P. Trouard, and M. F. Brown. 1998. Lipid bilayer dynamics from simultaneous analysis of orientation and frequency dependence of deuterium spin-lattice and quadrupolar order relaxation. Phys. Rev. E. 58:2259-2281.
41. Nye, J. F. 1985. Physical Properties of Crystals. Oxford University Press, Oxford, UK.
42. Rawicz, W., K. C. Olbrich, T. McIntosh, D. Needham, and E. Evans. 2000. Effect of chain length and unsaturation on elasticity of lipid bilayers. Biophys. J. 79:328-339.
43. Sackmann, E. 1995. Biological membranes architecture and function. In Structure and Dynamics of Membranes, from Cells to Vesicles, Vol. 1 of Handbook of Biological Physics. R. Lipowsky and E. Sackmann, editors. Elsevier, Amsterdam. 1-63.
44. Schrader, W., S. Halstenberg, R. Behrends, and U. Kaatze. 2003. Critical slowing in lipid bilayers. J. Phys. Chem. B. 107:14457-14463.
45. Schrader, W., and U. Kaatze. 2001. Zwitterion headgroup orientation correlation and mobility and the domain structure of membranes. J. Phys. Chem. B. 105:6266-6272.
46. Singer, S. J., and G. L. Nicolson. 1972. The fluid mosaic model of the structure of cell membranes. Science. 175:720-731.
47. Smith, W., and T. R. Forester. 1999. The DL_POLY_2 user manual, Version 2.12. CCLRC, Daresbury Laboratory, Warrington, UK.
48. Smondyrev, A. M., and M. L. Berkowitz. 1999. United atom force field for phospholipid membranes: constant pressure molecular dynamics simulation of dipalmitoylphosphatidicholine/water system. J. Comput. Chem. 20:531-545.
49. Tschoegl, N. W. 1989. The Phenomenological Theory of Linear Viscoelastic Behavior: An Introduction. Springer, Berlin.
50. Venable, R. M., Y. Zhang, B. J. Hardy, and R. W. Pastor. 1993. Molecular dynamics simulations of a lipid bilayer and of hexadecane: an investigation of membrane fluidity. Science. 262:223-226.
51. Weisz, K., G. Gröbner, C. Mayer, J. Stohrer, and G. Kothe. 1992. Deuteron nuclear magnetic resonance study of the dynamic organization of phospholipid/cholesterol bilayer membranes: molecular properties and viscoelastic behavior. Biochemistry. 31:1100-1112.
52. Yamamoto, J., Y. Tabe, and K. Okano. 1992. Anomalous hydrodynamic behavior of lyotropic smectic phases of hydrated phospholipid at low frequencies. Jpn. J. Appl. Phys. 31:L1560-L1562.
53. Zhang, Y., S. E. Feller, B. R. Brooks, and R. W. Pastor. 1995. Computer simulation of liquid/liquid interfaces. I. Theory and application to octane/water. J. Chem. Phys. 103:10252-10266.