Alphoid DNA from different chromosomes forms de novo minichromosomes with high efficiency

Chromosome Research

Volumn 13, Issue 4, 2005, Pages 411-422

  Kaname, T ^a,f   McGuigan, A ^a,g   Georghiou, A ^b   Yurov, Y ^c   Osoegawa, K ^d   De Jong, P J ^d   Ioannou, P ^e   Huxley, C ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b CYPRUS INSTITUTE OF NEUROLOGY AND GENETICS   (Cyprus)

^c MENTAL HEALTH RESEARCH CENTER   (Russian Federation)

^d CHILDREN S HOSPITAL OAKLAND RESEARCH INSTITUTE   (United States)

^e UNIVERSITY OF MELBOURNE   (Australia)

^f UNIVERSITY OF THE RYUKYUS   (Japan)

^g KING'S COLLEGE LONDON   (United Kingdom)

Author keywords

Alphoid DNA; BAC; Human artificial chromosome; Minichromosome; PAC

Indexed keywords

DNA;

ARTICLE; CONTROLLED STUDY; DNA DETERMINATION; ENZYME ANALYSIS; GENE EXPRESSION; GENE LIBRARY; GENETIC TRANSFECTION; HUMAN; HUMAN CELL; MINICHROMOSOME; MOLECULAR CLONING; PRIORITY JOURNAL;

CENTROMERE; CHROMOSOMES; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CHROMOSOMES, ARTIFICIAL, P1 BACTERIOPHAGE; CLONING, MOLECULAR; DNA, SATELLITE; HUMANS; SEQUENCE ANALYSIS, DNA;

EID: 20744453648     PISSN: 09673849     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10577-005-0979-4     Document Type: Article

References (30)

1. Alexandrov IA, Mashkova TD, Akopian TA et al. (1991) Chromosome-specific alpha satellites: two distinct families on human chromosome 18. Genomics 11: 15-23.
2. Basu J, Stromberg G, Compitello G, Willard HF, Van Bokkelen G (2005) Rapid creation of BAC-based human artificial chromosome vectors by transposition with synthetic alpha-satellite arrays. Nucl Acids Res 33: 587-596.
3. Devilee P, Slagboon P, Cornelisse CJ, Pearson PL (1986) Sequence heterogeneity within the human alphoid repetitive DNA family. Nucl Acids Res 14: 2059-2073.
4. Ebersole TA, Ross A, Clark E et al. (2000) Mammalian artificial chromosome formation from circular alphoid input DNA does not require telomere repeats. Hum Mol Genet 9: 1623-1631.
5. Greig GM, Warburton PE, Willard HF (1993) Organization and evolution of an alpha satellite DNA subset shared by human chromosomes 13 and 21. J Mol Evol 37: 464-475.
6. Grimes BR, Schindelhauer D, McGill NI, Ross A, Ebersole TA, Cooke HJ (2001) Stable gene expression from a mammalian artificial chromosome. EMBO Rep 2: 910-914.
7. Grimes BR, Rhoades AA, Willard HF (2002) Alpha-satellite DNA and vector composition influence rates of human artificial chromosome formation. Mol Ther 5: 798-805.
8. Grimes RG, Babcock J, Rudd MK, Chadwick B, Willard HF (2004) Assembly and characterization of heterochromatin and euchromatin on human artificial chromosomes. Genome Biol 5: R89.
9. Harrington JJ, Van Bokkelen G, Mays RW, Gustashaw K, Willard HF (1997) Formation of de novo centromeres and construction of first-generation human artificial microchromosomes. Nat Genet 15: 345-355.
10. Henning KA, Novoltny EA, Compton ST, Guan X-Y, Liu PP, Ashlock MA (1999) Human artificial chromosomes generated by modification of a yeast artificial chromosome containing both human alpha satellite and single-copy DNA sequences. Proc Natl Acad Sci USA 96: 592-597.
11. Ikeno M, Masumoto H, Okazaki T (1994) Distribution of CENP-B boxes reflected in CREST centromere antigenic sites on long-range α-satellite DNA arrays of human chromosome 21. Hum Mol Genet 3: 1245-1257.
12. Ikeno M, Grimes B, Okazaki T et al. (1998) Construction of YAC-based mammalian artificial chromosomes. Nat Biotechnol 16: 431-439.
13. Ikeno M, Inagaki H, Nagata K, Morita M, Ichinose H, Okazaki T (2002) Generation of human artificial chromosomes expressing naturally controlled guanosine triphosphate cyclohydrolase I gene. Genes Cells 7: 1021-1032.
14. Ioannou PA, Amemiya CT, Garnes J et al. (1994) A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nat Genet 6: 84-89.
15. Jørgensen AL, Kølvraa S, Jones C, Bak AL (1988) A subfamily of alphoid repetitive DNA shared by the NOR-bearing human chromosomes 14 and 22. Genomics 3: 100-109.
16. Kaname T, Huxley C (2001) Simple and efficient vectors for retrofitting BACs and PACs with mammalian neoR and EGFP marker genes. Gene 266: 147-153.
17. Kaname T, Miyauchi T, Kuwano A, Matsuda Y, Muramatsu T, Kajii T (1993) Mapping basigin (BSG), a member of the immunoglubulin superfamily, to 19p13.3. Cytogenet Cell Genet 64: 195-197.
18. Kouprina N, Ebersole T, Koriabine M et al. (2003) Cloning of human centromeres by transformation associated recombination in yeast and generation of functional human artificial chromosomes. Nucleic Acids Res 31: 922-934.
19. Laner A, Schwarz T, Christan S, Schindelhauer D (2004) Suitability of a CMV/EGFP cassette to monitor stable expression from human artificial chromosomes but not transient transferin the cells forming viable clones. Cytogenet Genome Res 107: 9-13.
20. Masumoto H, Ikeno M, Nakano M et al. (1998) Assay of centromere function using a human artificial chromosome. Chromosoma 107: 406-416.
21. Mejia JE, Willmott A, Levy E, Earnshaw WC, Larin Z (2001) Functional complementation of a genetic deficiency with human artificial chromosomes. Am J Hum Genet 69: 315-326.
22. Mejia JE, Alazami A, Willmott A et al. (2002) Efficiency of de novo centromere formation in human artificial chromosomes. Genomics 79: 297-304.
23. Mills W, Critcher R, Lee C, Farr CJ (1999) Generation of an ∼2.4 Mb human X centromere-based minichromosome by targeted telomere-associated chromosome fragmentation in DT40. Hum Mol Genet 8: 751-761.
24. Ohzeki J, Nakano M, Okada T, Masumoto H (2002) CENP-B box is required for de novo centromere chromatin assembly on human alphoid DNA. J Cell Biol 159: 765-775.
25. Osoegawa K, Mammoser AG, Wu C et al. (2001) A bacterial artificial chromosome library for sequencing the complete human genome. Genome Res 11: 483-496.
26. Rudd MK, Mays RW, Schwartz S, Willard HF (2003) Human artificial chromosomes with alpha satellite-based de novo centromeres show increased frequency of nondisjunction and anaphase lag. Mol Cell Biol 23: 7689-7697.
27. Schueler MG, Higgins AW, Rudd MK, Gustashaw K, Willard HF (2001) Genomic and genetic definition of a functional human centromere. Science 294: 109-115.
28. Warburton PE, Willard HF (1992) PCR amplification of tandemly repeated DNA: analysis of intra- and interchromosomal sequence variation and homologous unequal crossing-over in humna alpha satellite DNA. Nucl Acids Res 20: 6033-6042.
29. Waye JS, Willard HF (1986) Structure, organization and sequence of alpha satellite DNA from human chromosome 17: evidence for evolution by unequal crossing-over and an ancestral pentamer repeat shared with the human X chromosome. Mol Cell Biol 6: 3156-3165.
30. Waye JS, Willard HF (1987) Nucleotide sequence heterogeneity of alphoid satellite repetitive DNA: a survey of alphoid sequences from different human chromosomes. Nucl Acids Res 15: 7549-7569.