Structure and modeling studies of the carboxy-terminus region of human tropoelastin

Matrix Biology

Volumn 24, Issue 4, 2005, Pages 271-282

  Floquet, Nicolas ^a,c   Pepe, Antonietta ^b   Dauchez, Manuel ^a,d   Bochicchio, Brigida ^b   Tamburro, Antonio M ^b   Alix, Alain J P ^a  

^a UNIVERSITÉ DE REIMS CHAMPAGNE ARDENNE   (France)

^b UNIVERSITY OF BASILICATA   (Italy)

^c CNRS   (France)

^d UFR Sciences   (France)

Author keywords

turns; Circular dichroism; Consensus sequence; Elastin structure; Molecular modeling; NMR; Peptide assembly; Tropoelastin exon 36

Indexed keywords

AMINO ACID; GLYCYLGLYCYLALANYLCYSTEINYLLEUCYLGLYCYLLYSYLALANYLCYSTEINYLGLYCYLARGINYL LYSYLARGINYLLYSINE; PEPTIDE; SCLEROPROTEIN; TROPOELASTIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BETA CHAIN; CARBOXY TERMINAL SEQUENCE; CIRCULAR DICHROISM; CONSENSUS; ELASTIC FIBER; MACROMOLECULE; MOLECULAR DYNAMICS; MOLECULAR MODEL; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN CROSS LINKING; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CIRCULAR DICHROISM; DATABASES, PROTEIN; DISULFIDES; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MONTE CARLO METHOD; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TROPOELASTIN;

EID: 20744434889     PISSN: 0945053X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.matbio.2005.03.002     Document Type: Article

References (38)

1. A.J.P. Alix, M. Dauchez, and L. Debelle A critical disulfide bridge in elastins: modeling from spectroscopic data to 3D structures J.C. Merlin Spectroscopy of Biological Molecules 1995 Kluwer Academic Publishers Dordrecht 97 98
2. A.J.P. Alix, L. Debelle, M. Berjot, M. Dauchez, D. Gulyaev, I. Nabiev, M.P. Jacob, and M. Sauvage Molecular and supramolecular architecture of elastin A.M. Tamburro Elastin and Elastic Tissue 1997 Armento Press Potenza, Italia 23 30
3. A. Bax, and D.G. Davis Practical aspects of two-dimensional transverse NOE spectroscopy J. Magn. Reson. 63 1985 207 215
4. A. Bairoch, and R. Apweiler The SWISS-PROT protein sequence data bank and its supplement TREMBL Nucleic Acids Res. 25 1997 31 36
5. H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, and P.E. Bourne The protein data bank Nucleic Acids Res. 28 2000 235 242
6. B. Bochicchio, N. Floquet, A. Pepe, A.J.P. Alix, and A.M. Tamburro Dissection of human tropoelastin: solution structure, dynamics and self-assembly of the exon 5 peptide Chem. Eur. J. 10 2004 3166 3176
7. L. Braunschweiler, and R.R. Ernst Coherence transfer by isotropic mixing: application to proton correlation spectroscopy J. Magn. Reson. 53 1983 521 528
8. B.R. Brooks, R.E. Bruccoleri, B.D. Olafson, D.J. States, S. Swaminathan, and M. Karplus CHARMM: a program for macromolecular energy, minimization and dynamics calculations J. Comput. Chem. 4 1983 187 217
9. P.L. Brown, L. Mecham, C. Tisdale, and R.P. Mecham The cysteine residues in the carboxy terminal domain of tropoelastin form an intrachain disulfide bond that stabilizes a loop structure and positively charged pocket Biochem. Biophys. Res. Commun. 186 1 1992 549 555
10. P. Brown-Augsburger, T. Broekelmann, L. Mecham, R. Mercer, M.A. Gibson, E.G. Cleary, W.R. Abrams, J. Rosenbloom, and R.P. Mecham Microfibril-associated glycoprotein binds to the carboxyl-terminal domain of tropoelastin and is a substrate for transglutaminase J. Biol. Chem. 269 45 1994 28443 28449
11. P. Brown-Augsburger, C. Tisdale, T. Broekelmann, C. Sloan, and R.P. Mecham Identification of an elastin cross-linking domain that joins three peptide chains. Possible role in nucleated assembly J. Biol. Chem. 270 30 1995 17778 17783
12. A.T. Brünger, P.D. Adams, G.M. Clore, W.L. DeLano, P. Gros, W. Grosse-Kunstleve, J.S. Jiang, J. Kuszewski, M. Nilges, N.S. Pannu, R.J. Read, L.M. Rice, T. Simonson, and G.L. Warren Crystallography and NMR system: a new software suite for macromolecular structure determination Acta Crystallogr. D54 1998 905 921
13. A.W. Clarke, and A.S. Weiss Microfibril-associated glycoprotein-1 binding to tropoelastin; multiple binding sites and the role of divalent cations Eur. J. Biochem. 271 2004 3085 3090
14. K.Y. Cockwell, and I.G. Giles Software tools for motif and pattern scanning: program descriptions including a universal sequence reading algorithm Comput. Appl. Biosci. 5 3 1989 227 232
15. L. Debelle, and A.J.P. Alix Optical spectroscopic determination of bovine tropoelastin molecular model J. Mol. Struct. 348 1995 321 324
16. L. Debelle, and A.J.P. Alix The structures of elastins and their function Biochimie 81 10 1999 981 994
17. L. Debelle, A.J.P. Alix, S.M. Wei, M.P. Jacob, J.P. Huvenne, M. Berjot, and P. Legrand The secondary structure and architecture of human elastin Eur. J. Biochem. 258 2 1998 533 539
18. R.G. Efremov, P.E. Volynsky, M. Dauchez, D.E. Nolde, A.S. Arseniev, and A.J.P. Alix Assessment of the conformation and energetics of the N-terminal part of elafin via computer simulations Theor. Chem. Acc. 106 2001 55 61
19. M.L. Finnis, and M.A. Gibson Microfibril-associated glycoprotein-1 (MAGP-1) binds to the pepsin-resistant domain of the alpha3(VI) chain of type VI collagen J. Biol. Chem. 272 36 1997 22817 22823
20. H. Hsiao, P.J. Stone, P. Toselli, J. Rosenbloom, C. Franzblau, and B.M. Schreiber The role of the carboxy terminus of tropoelastin in its assembly into the elastic fiber Connect. Tissue Res. 40 2 1999 83 95
21. E.G. Hutchinson, and J.M. Thornton A revised set of potentials for beta-turn formation in proteins Protein Sci. 3 12 1994 2207 2216
22. S.A. Jensen, D.P. Reinhardt, M.A. Gibson, and A.S. Weiss Protein interaction studies of MAGP-1 with tropoelastin and fibrillin-1 J. Biol. Chem. 276 43 2001 39661 39666
23. W.L. Jorgensen, J. Chandrasekhar, and J.D. Madura Comparison of simple model functions for simulating liquid water J. Chem. Phys. 79 2 1983 926 935
24. B.A. Kozel, H. Wachi, E.C. Davis, and R.P. Mecham Domains in tropoelastin that mediate elastin deposition in vitro and in vivo J. Biol. Chem. 278 20 2003 18491 18498
25. W. MacKerell Jr., D. Bashford, M. Bellott, R.L. Dunbrack Jr., J.D. Evanseck, M.J. Field, S. Fisher, J. Gao, H. Guo, S. Ha, D. Joseph-MacCarthy, L. Kuchnir, K. Kuczera, F.T.K. Lau, C. Mattos, S. Michnick, T. Ngo, D.T. Nguyen, B. Prodhom, W.E. Reiher III, B. Roux, M. Schlenkrich, J.C. Smith, R. Stote, S. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, and M. Karplus All-atom potential for molecular modeling and dynamics studies of proteins J. Phys. Chem., B 102 1998 3586 3616
26. R.P. Mecham, T. Broekelmann, E.C. Davis, M.A. Gibson, and P. Brown-Augsburger Elastic fibre assembly: macromolecular interactions Ciba Found. symp. 192 1995 172 181 (discussion 181-4)
27. L.D. Muiznieks, S.A. Jensen, and A.S. Weiss Structural changes and facilitated association of tropoelastin Arch. Biochem. Biophys. 410 2 2003 317 323
28. A.S. Penner, M.J. Rock, C.M. Kielty, and J.M. Shipley Microfibril-associated glycoprotein-2 interacts with fibrillin-1 and fibrillin-2 suggesting a role for MAGP-2 in elastic fiber assembly J. Biol. Chem. 277 38 2002 35044 35049
29. M. Piotto, V. Saudek, and V. Sklenar Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions J. Biomol. NMR 2 1992 661 665
30. B. Reinboth, E. Hanssen, E.G. Cleary, and M.A. Gibson Molecular interactions of biglycan and decorin with elastic fiber components: biglycan forms a ternary complex with tropoelastin and microfibril-associated glycoprotein 1 J. Biol. Chem. 277 6 2002 3950 3957
31. D. Roccatano, G. Colombo, M. Fioroni, and A.E. Mark Mechanism by which 2,2,2-trifluoroethanol/water mixtures stabilize secondary-structure formation in peptides: a molecular dynamics study Proc. Natl. Acad. Sci. U. S. A. 99 19 2002 12179 12184
32. U.R. Rodgers, and A.S. Weiss Integrin αVβ3 binds a unique non-RGD site near the C-terminus of human tropoelastin Biochimie 86 2004 173 178
33. A.M. Tamburro, B. Bochicchio, and A. Pepe Dissection of human tropoelastin: exon-by-exon chemical synthesis and related conformational studies Biochemistry 42 2003 13347 13362
34. P. Toonkool, S.A. Jensen, A.L. Maxwell, and A.S. Weiss Hydrophobic domains of human tropoelastin interact in a context-dependent manner J. Biol. Chem. 276 48 2001 44575 44580
35. B. Von Freyberg, and W. Braun J. Comput. Chem. 12 1991 1065
36. C.M. Wilmot, and J.M. Thornton Beta-turns and their distortions: a proposed new nomenclature Protein Eng. 3 6 1990 479 493
37. D.S. Wishart, B.D. Sykes, and F.M. Richards The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy Biochemistry 31 1992 1647 1651
38. K. Wüthrich NMR of Proteins and Nucleic Acids 1986 Wiley New York