Expressed Sequence Tags and their application for plant research

Acta Physiologiae Plantarum

Volumn 27, Issue 2, 2005, Pages 157-161

  Kisiel, Agnieszka ^a   Podkowiński, Jan ^a  

^a INSTITUTE OF BIOORGANIC CHEMISTRY   (Poland)

Author keywords

cDNA arrays; EST; Functional genomics; Gene discovery; Gene mapping

Indexed keywords

EID: 20744433240     PISSN: 01375881     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11738-005-0019-1     Document Type: Conference Paper

References (13)

1. Aharoni A., Vorst O. 2001. DNA microarrays for functional plant genomics. Plant Mol. Biol., 48: 99-118
2. Ching A., Rafalski A. 2002. Rapid genetic mapping of ESTs using SNP pyrosequencing and indel analysis. Cell Mol Biol Lett., 7: 803-810
3. Colebatch G., Kloska S., Trevaskis B., Freund S.,Altmann T., Udvardi M.K. 2002. Novel Aspects of Symbiotic Nitrogen Fixation Uncovered by Transcript Profiling with cDNA Arrays. MPMI, 15: 411-420.
4. Crock J., Wildung M., Croteau R. 1997. Isolation and bacterial expression of a sesquiterpene synthase cDNA clone from peppermint (Mentha x piperita, L.) that produces the aphid alarm pheromone (E)-beta-farnesene. Proc Natl Acad Sci, 94: 12833-12838.
5. Dong Q., Roy L., Freeling M., Walbot V., Brendel V. 2003. ZmDB, an integrated database for maize genome research. mDB, an integrated database for maize genome research. Nucleic Acids Res., 31: 244-247.
6. Fedorova M., van de Mortel J., Matsumoto P.A., Cho J. Town Ch.D., VandenBosch K.A., Gantt S., Vance C.P. 2002. Genome-Wide Identification of Nodule-Specific Transcripts in the Model Legume Medicago truncatula. Plant Physiol., 130: 519-537.
7. Guterman I., Shalit M., Menda N., Piestun D., Dafny-Yelin M., Shalev G., Bar E., Davydov O., Ovadis M., Emanuel M., Wang J., Adam Z., Pichersky E., Lewinsohn E., Zamir D., Vainstein A., Weiss D. 2002. Rose scent: genomics approach to discovering novel floral fragrance-related genes. Plant Cell, 14: 2325-2338.
8. Kantety R.V., La Rota M., Matthews D.E., Sorrells M.E. 2002. Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol. Biol., 48: 501-510.
9. Mekhedov S., de Ilarduya O.M. Ohlrogge J. 2000. Toward a Functional Catalog of the Plant Genome. A Survey of Genes for Lipid Biosynthesis. Plant Physiol., 122: 389-401.
10. Rafalski J.A., Hanafey M., Miao G.H., Ching A., Lee J.M., Dolan M., Tingey S. 1998. New experimental and computational approaches to the analysis of gene expression. Acta Biochim Pol., 45: 929-934
11. Shoemaker R. et al. 2002. A compilation of soybean ESTs: generation and analysis. Genome, 45: 329-338.
12. Ujino-Ihara T., Yoshimura K., Ugawa Y., Yoshimaru H., Nagasaka K., Tsumura Y. 2000. Expression analysis of ESTs derived from the inner bark of Cryptomeria japonica. Plant Mol. Biol., 43: 451-45
13. Xu W., Bak S., Decker A., Paquette S.M., Feyereisen R., Galbraith D.W. 2001. Microarray-based analysis of gene expression in very large gene families: the cytochrome P450 gene superfamily of Arabidopsis thaliana. Gene, 272:61-74.