The genetic diversity of lactic acid producing bacteria in the equine gastrointestinal tract

FEMS Microbiology Letters

Volumn 248, Issue 1, 2005, Pages 75-81

  Al Jassim, Rafat A M ^a   Scott, Paul T ^a   Trebbin, Andrea L ^a   Trott, Darren ^a   Pollitt, Christopher C ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

Acidosis; L. delbrueckii; L. mucosae; L. salivarius; Lactic acid producing bacteria; Lactobacillus; Mitsuokella jalaludinii

Indexed keywords

FRUCTOSE; GENOMIC DNA; LACTIC ACID; RESTRICTION ENDONUCLEASE; RIBOSOME DNA;

ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; BACTERIUM; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CONTROLLED STUDY; DIET; DIGESTIVE SYSTEM INFLAMMATION; DNA SEQUENCE; GASTROINTESTINAL TRACT; GENE AMPLIFICATION; GENETIC TRAIT; GENETIC VARIABILITY; HORSE; INTESTINE FLORA; LACTIC ACID BACTERIUM; LACTIC ACIDOSIS; LACTOBACILLUS; LACTOBACILLUS DELBRUECKII; LACTOBACILLUS MUCOSAE; LACTOBACILLUS SALIVARIUS; LAMINA PROPRIA; MALE; MITSUOKELLA JALALUDINII; MOLECULAR CLOCK; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; STOMACH ULCER;

ACIDOSIS; ANIMALS; GASTROINTESTINAL TRACT; HORSES; LACTOBACILLUS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

EQUIDAE; LACTOBACILLUS; LACTOBACILLUS DELBRUECKII; LACTOBACILLUS MUCOSAE; LACTOBACILLUS SALIVARIUS; MITSUOKELLA JALALUDINII;

EID: 20444484742     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2005.05.023     Document Type: Article

References (28)

1. C.C. Pollitt Basement membrane pathology: a feature of acute equine laminitis Equine Vet. J. 28 1996 38 46
2. H.E. Garner, D.P. Hutcheson, J.R. Coffman, and A.W. Hahn Lactic acidosis: a factor associated with equine laminitis J. Anim. Sci. 45 1977 1037 1041
3. J.B. Rowe, M.J. Lees, and D.W. Pethick Prevention of acidosis and laminitis associated with grain feeding in horses J. Nutr. 124 1994 2742S 2744S
4. R.A.M. Al Jassim, and J.B. Rowe Better understanding of acidosis and its control Recent Adv. Anim. Nutr. Aust. 12 1999 91 97
5. R.A.M. Al Jassim, M.A. Hohenhaus, and K.D. Healey Is sorghum a safe grain for horses? Digestibility and hind gut fermentation Recent Adv. Anim. Nutr. Aust. 13 2001 14A
6. K. Daly, C.S. Stewart, H.J. Flint, and S.P. Shirazai-Beechey Bacterial diversity within the equine large intestine as revealed by molecular analysis of cloned 16S rRNA genes FEMS Microbiol. Ecol. 38 2001 141 151
7. S.R. Bailey, M.-L. Baillon, A.N. Rycroft, P.A. Harris, and J. Elliott Identification of equine cecal bacteria producing amines in an in vitro model of carbohydrate overload Appl. Environ. Microbiol. 69 2003 2087 2093
8. D.R. Caldwell, and M.P. Bryant Medium without rumen fluid for non-selective enumeration and isolation of rumen bacteria Appl. Microbiol. 14 1966 794 801
9. J.C. De Man, M. Rogosa, and M.E. Sharp A medium for the cultivation of lactobacilli J. Appl. Bacteriol. 23 1960 130 135
10. R.A.M. Al Jassim Lactobacillus ruminis is a pre-dominant lactic acid producing bacterium in the caecum and rectum of the pig Lett. Appl. Microbiol. 37 2003 213 217
11. S. Maloy Experimental techniques in bacterial genetics 1989 Jones and Bartlet Boston
12. D.J. Lane 16S/23S rRNA sequencing E. Stackebrandt M. Goodfellow Nucleic acid techniques in bacterial systematics 1991 John Wiley and Sons New York, NY 115 175
13. J. Sambrook, and D.W. Russell Molecular cloning: a laboratory manual 3rd Edn. 2001 Cold Spring Harbor Laboratory Press Cold Spring Harbor
14. T.A. Hall Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucl. Acids Symp. 41 1999 95 98
15. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
16. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
17. S. Kumar, K. Tamura, I.B. Jakobsen, and M. Nei MEGA2: molecular evolutionary genetics analysis software Bioinformatics 17 2001 1244 1245
18. N. Yuki, T. Shimazaki, A. Kushiro, K. Watanabe, K. Uchida, K. Yuyama, and M. Morotomi Colonization of stratified squamous epithelium of the non-glandular area of the horse stomach by lactobacilli Appl. Environ. Micrbiol. 66 2000 5030 5034
19. C.C. Pollitt, and C.T. Davies Equine laminitis: its development coincides with increased sublamellar blood flow Equine Vet. J., Suppl. 26 1998 125 132
20. B.A. Mungall, M. Kyaw Tanner, and C.C. Pollitt In vitro evidence for a bacterial pathogenesis of equine laminitis Vet. Microbiol. 79 2001 209 223
21. H.G. Helig, E.G. Zoetendal, E.E. Vaughan, P. Marteau, A.D. Akkermans, and W.M. de Vos Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA Appl. Environ. Microbiol. 68 2002 114 123
22. C.L. Randazzo, S. Torriani, A.D.L. Akkermans, W.M. de Vos, and E.E. Vaughan Diversity, dynamics, and activity of bacterial communities during the production of artisanal Sicilian cheese as evaluated by 16S rRNA analysis Appl. Environ. Microbiol. 68 2002 1882 1892
23. S. Van Beek, and F.G. Priest Evolution of lactic acid bacterial community during malt whisky fermentation: a polyphasic study Appl. Environ. Microbiol. 68 2002 297 305
24. T.D. Lesser, J.Z. Amenuvor, T.K. Jensen, R.H. Lindecrona, M. Boye, and K. Møller Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited Appl. Environ. Microbiol. 68 2002 673 690
25. X.Y. Zhu, T. Zhong, Y. Pandya, and R.D. Joerger 16S rRNA-based analysis of microbiota from the cecum of broiler chickens Appl. Environ. Microbiol. 68 2002 124 137
26. T. Kaneko, Y. Bando, H. Kurihara, K. Satomi, K. Ninoyama, and N. Matsuura Faecal microflora in a patient with short-bowel syndrome and identification of dominant lactobacilli J. Clin. Microbiol. 35 1997 3181 3185
27. M.R. Becker, B.J. Paster, E.J. Leys, M.L. Moeschberger, S.G. Kenyon, J.L. Galvin, S.K. Boches, F.E. Dewhirst, and A.L. Griffen Molecular analysis of bacterial species associated with childhood caries J. Clin. Microbiol. 40 2002 1001 1009
28. G.Q. Lan, Y.W. Ho, and N. Abdallah Mitsuokella jalaludinii sp. nov., from the rumens of cattle in Malaysia Int. J. Syst. Evol. Microbiol. 52 2002 713 718