-
1
-
-
0038304267
-
CodY is a nutritional repressor of flagellar gene expression in Bacillus subtilis
-
Bergara, F., C. Ibarra, J. Iwamasa, J. C. Patarroyo, R. Aguilera, and L. M. Marquez-Magana. 2003. CodY is a nutritional repressor of flagellar gene expression in Bacillus subtilis. J. Bacteriol. 185:3118-3126.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3118-3126
-
-
Bergara, F.1
Ibarra, C.2
Iwamasa, J.3
Patarroyo, J.C.4
Aguilera, R.5
Marquez-Magana, L.M.6
-
2
-
-
0037238126
-
Crystallization of the GTP-dependent transcriptional regulator CodY from Bacillus subtilis
-
Blagova, E. V., V. M. Levdikov, K. Tachikawa, A. L. Sonenshein, and A. J. Wilkinson. 2003. Crystallization of the GTP-dependent transcriptional regulator CodY from Bacillus subtilis. Acta Crystallogr. Sect. D 59:155-157.
-
(2003)
Acta Crystallogr. Sect. D
, vol.59
, pp. 155-157
-
-
Blagova, E.V.1
Levdikov, V.M.2
Tachikawa, K.3
Sonenshein, A.L.4
Wilkinson, A.J.5
-
3
-
-
0024571640
-
The helix-turn-helix DNA binding motif
-
Brennan, R. G., and B. W. Matthews. 1989. The helix-turn-helix DNA binding motif. J. Biol. Chem. 264:1903-1906.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 1903-1906
-
-
Brennan, R.G.1
Matthews, B.W.2
-
4
-
-
0038317622
-
CodY-regulated aminotransferases AraT and BcaT play a major role in the growth of Lactococcus lactis in milk by regulating the intracellular pool of amino acids
-
Chambellon, E., and M. Yvon. 2003. CodY-regulated aminotransferases AraT and BcaT play a major role in the growth of Lactococcus lactis in milk by regulating the intracellular pool of amino acids. Appl. Environ. Microbiol. 69:3061-3068.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 3061-3068
-
-
Chambellon, E.1
Yvon, M.2
-
5
-
-
0032913240
-
Role of BkdR, a transcriptional activator of the SigL-dependent isoleucine and valine degradation pathway in Bacillus subtilis
-
Debarbouille, M., R. Gardan, M. Arnaud, and G. Rapoport. 1999. Role of BkdR, a transcriptional activator of the SigL-dependent isoleucine and valine degradation pathway in Bacillus subtilis. J. Bacteriol. 181:2059-2066.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 2059-2066
-
-
Debarbouille, M.1
Gardan, R.2
Arnaud, M.3
Rapoport, G.4
-
6
-
-
11844277701
-
Probing direct interactions between CodY and the oppD promoter of Lactococcus lactis
-
den Hengst, C. D., P. Curley, R. Larsen, G. Buist, A. Nauta, D. van Sinderen, O. P. Kuipers, and J. Kok. 2005. Probing direct interactions between CodY and the oppD promoter of Lactococcus lactis. J. Bacteriol. 187:512-521.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 512-521
-
-
Den Hengst, C.D.1
Curley, P.2
Larsen, R.3
Buist, G.4
Nauta, A.5
Van Sinderen, D.6
Kuipers, O.P.7
Kok, J.8
-
7
-
-
0024999332
-
Improved detection of helix-turn-helix DNA-binding motifs in protein sequences
-
Dodd, I. B., and J. B. Egan. 1990. Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res. 18:5019-5026.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 5019-5026
-
-
Dodd, I.B.1
Egan, J.B.2
-
8
-
-
0023948010
-
High efficiency transformation of E. coli by high voltage electroporation
-
Dower, W. J., J. F. Miller, and C. W. Ragsdale. 1988. High efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res. 16:6127-6145.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 6127-6145
-
-
Dower, W.J.1
Miller, J.F.2
Ragsdale, C.W.3
-
9
-
-
0029977011
-
Role of CodY in regulation of the Bacillus subtilis hut operon
-
Fisher, S. H., K. Rohrer, and A. E. Ferson. 1996. Role of CodY in regulation of the Bacillus subtilis hut operon. J. Bacteriol. 178:3779-3784.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3779-3784
-
-
Fisher, S.H.1
Rohrer, K.2
Ferson, A.E.3
-
10
-
-
0025014845
-
A target for carbon source-dependent negative regulation of the citB promoter of Bacillus subtilis
-
Fouet, A., and A. L. Sonenshein. 1990. A target for carbon source-dependent negative regulation of the citB promoter of Bacillus subtilis. J. Bacteriol. 172:835-844.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 835-844
-
-
Fouet, A.1
Sonenshein, A.L.2
-
11
-
-
0026643581
-
Transcriptional regulation of the ilv-leu operon of Bacillus subtilis
-
Grandoni, J. A., S. A. Zahler, and J. M. Calvo. 1992. Transcriptional regulation of the ilv-leu operon of Bacillus subtilis. J. Bacteriol. 174:3212-3219.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 3212-3219
-
-
Grandoni, J.A.1
Zahler, S.A.2
Calvo, J.M.3
-
12
-
-
0034980991
-
Transcriptional pattern of genes coding for the proteolytic system of Lactococcus lactis and evidence for coordinated regulation of key enzymes by peptide supply
-
Guedon, E., P. Renault, S. D. Ehrlich, and C. Delorme. 2001. Transcriptional pattern of genes coding for the proteolytic system of Lactococcus lactis and evidence for coordinated regulation of key enzymes by peptide supply. J. Bacteriol. 183:3614-3622.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 3614-3622
-
-
Guedon, E.1
Renault, P.2
Ehrlich, S.D.3
Delorme, C.4
-
13
-
-
0034978593
-
Pleiotropic transcriptional repressor CodY senses the intracellular pool of branched-chain amino acids in Lactococcus lactis
-
Guedon, E., P. Serror, S. D. Ehrlich, P. Renault, and C. Delorme. 2001. Pleiotropic transcriptional repressor CodY senses the intracellular pool of branched-chain amino acids in Lactococcus lactis. Mol. Microbiol. 40:1227-1239.
-
(2001)
Mol. Microbiol.
, vol.40
, pp. 1227-1239
-
-
Guedon, E.1
Serror, P.2
Ehrlich, S.D.3
Renault, P.4
Delorme, C.5
-
15
-
-
0025310356
-
DNA recognition by proteins with the helix-turn-helix motif
-
Harrisson, S. C., and A. Aggarwal. 1990. DNA recognition by proteins with the helix-turn-helix motif. Annu. Rev. Biochem. 59:933-969.
-
(1990)
Annu. Rev. Biochem.
, vol.59
, pp. 933-969
-
-
Harrisson, S.C.1
Aggarwal, A.2
-
16
-
-
0025052636
-
Transcriptional anti-termination in the bgl operon of E. coli is modulated by a specific RNA binding protein
-
Houman, F., M. R. Diaz-Torres, and A. Wright. 1990. Transcriptional anti-termination in the bgl operon of E. coli is modulated by a specific RNA binding protein. Cell 62:1153-1163.
-
(1990)
Cell
, vol.62
, pp. 1153-1163
-
-
Houman, F.1
Diaz-Torres, M.R.2
Wright, A.3
-
17
-
-
0031054108
-
Critical base pairs and amino acid residues for protein-DNA interaction between the TyrR protein and tyrP operator of Escherichia coli
-
Hwang, J. S., J. Yang, and A. J. Pittard. 1997. Critical base pairs and amino acid residues for protein-DNA interaction between the TyrR protein and tyrP operator of Escherichia coli. J. Bacteriol. 179:1051-1058.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 1051-1058
-
-
Hwang, J.S.1
Yang, J.2
Pittard, A.J.3
-
18
-
-
0032930213
-
Specific contacts between residues in the DNA-binding domain of the TyrR protein and bases in the operator of the tyrP gene of Escherichia coli
-
Hwang, J. S., J. Yang, and A. J. Pittard. 1999. Specific contacts between residues in the DNA-binding domain of the TyrR protein and bases in the operator of the tyrP gene of Escherichia coli. J. Bacteriol. 181:2338-2345.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 2338-2345
-
-
Hwang, J.S.1
Yang, J.2
Pittard, A.J.3
-
19
-
-
0036306304
-
RelA protein is involved in induction of genetic competence in certain Bacillus subtilis strains by moderating the level of intracellular GTP
-
Inaoka, T., and K. Ochi. 2002. RelA protein is involved in induction of genetic competence in certain Bacillus subtilis strains by moderating the level of intracellular GTP. J. Bacteriol. 184:3923-3930.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3923-3930
-
-
Inaoka, T.1
Ochi, K.2
-
20
-
-
0037462759
-
Guanine nucleotides guanosine 5′-diphosphate 3′-diphosphate and GTP co-operatively regulate the production of an antibiotic bacilysin in Bacillus subtilis
-
Inaoka, T., K. Takahashi, M. Ohnishi-Kameyama, M. Yoshida, and K. Ochi. 2003. Guanine nucleotides guanosine 5′-diphosphate 3′-diphosphate and GTP co-operatively regulate the production of an antibiotic bacilysin in Bacillus subtilis. J. Biol. Chem. 278:2169-2176.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 2169-2176
-
-
Inaoka, T.1
Takahashi, K.2
Ohnishi-Kameyama, M.3
Yoshida, M.4
Ochi, K.5
-
21
-
-
0037369868
-
Complex regulation of the Bacillus subtilis aconitase gene
-
Kim, H. J., S. I. Kim, M. Ratnayake-Lecamwasam, K. Tachikawa, A. L. Sonenshein, and M. Strauch. 2003. Complex regulation of the Bacillus subtilis aconitase gene. J. Bacteriol. 185:1672-1680.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1672-1680
-
-
Kim, H.J.1
Kim, S.I.2
Ratnayake-Lecamwasam, M.3
Tachikawa, K.4
Sonenshein, A.L.5
Strauch, M.6
-
22
-
-
0036049588
-
Direct and indirect roles of CcpA in regulation of Bacillus subtilis Krebs cycle genes
-
Kim, H. J., A. Roux, and A. L. Sonenshein. 2002. Direct and indirect roles of CcpA in regulation of Bacillus subtilis Krebs cycle genes. Mol. Microbiol. 45:179-190.
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 179-190
-
-
Kim, H.J.1
Roux, A.2
Sonenshein, A.L.3
-
23
-
-
0036267873
-
Two DNA-binding domains of Mga are required for virulence gene activation in the group A streptococcus
-
McIver, K. S., and R. L. Myles. 2002. Two DNA-binding domains of Mga are required for virulence gene activation in the group A streptococcus. Mol. Microbiol. 43:1591-1601.
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 1591-1601
-
-
McIver, K.S.1
Myles, R.L.2
-
24
-
-
0026758819
-
Decreased function of the class B tetracycline efflux protein Tet with mutations at aspartate 15, a putative intramembrane residue
-
McMurry, L. M., M. Stephan, and S. B. Levy. 1992. Decreased function of the class B tetracycline efflux protein Tet with mutations at aspartate 15, a putative intramembrane residue. J. Bacteriol. 174:6294-6297.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 6294-6297
-
-
McMurry, L.M.1
Stephan, M.2
Levy, S.B.3
-
25
-
-
0026573580
-
A general and fast method to generate multiple site directed mutations
-
Mikaelian, I., and A. Sergeant. 1992. A general and fast method to generate multiple site directed mutations. Nucleic Acids Res. 20:376.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 376
-
-
Mikaelian, I.1
Sergeant, A.2
-
26
-
-
0003785155
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
a. Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
-
28
-
-
0037336206
-
Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis
-
Molle, V., Y. Nakaura, R. P. Shivers, H. Yamaguchi, R. Losick, Y. Fujita, and A. L. Sonenshein. 2003. Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis. J. Bacteriol. 185:1911-1922.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1911-1922
-
-
Molle, V.1
Nakaura, Y.2
Shivers, R.P.3
Yamaguchi, H.4
Losick, R.5
Fujita, Y.6
Sonenshein, A.L.7
-
29
-
-
0026638420
-
Transcriptional regulation of Bacillus subtilis glucose starvation-inducible genes: Control of gsiA by the ComP-ComA signal transduction system
-
Mueller, J. P., G. Bukusoglu, and A. L. Sonenshein. 1992. Transcriptional regulation of Bacillus subtilis glucose starvation-inducible genes: control of gsiA by the ComP-ComA signal transduction system. J. Bacteriol. 174:4361-4373.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 4361-4373
-
-
Mueller, J.P.1
Bukusoglu, G.2
Sonenshein, A.L.3
-
30
-
-
0018795188
-
A single amino acid substitution in a histidine-transport protein drastically alters its mobility in sodium dodecyl sulfate-polyacrylamide gel electrophoresis
-
Noel, D., K. Nikaido, and G. F. Ames. 1979. A single amino acid substitution in a histidine-transport protein drastically alters its mobility in sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Biochemistry 18:4159-4165.
-
(1979)
Biochemistry
, vol.18
, pp. 4159-4165
-
-
Noel, D.1
Nikaido, K.2
Ames, G.F.3
-
31
-
-
0025268542
-
Conserved residues make similar contacts in two repressor-operator complexes
-
Pabo, C. O., A. K. Aggarwal, S. R. Jordan, L. J. Beamer, U. R. Obeysekare, and S. C. Harrison. 1990. Conserved residues make similar contacts in two repressor-operator complexes. Science 247:1210-1213.
-
(1990)
Science
, vol.247
, pp. 1210-1213
-
-
Pabo, C.O.1
Aggarwal, A.K.2
Jordan, S.R.3
Beamer, L.J.4
Obeysekare, U.R.5
Harrison, S.C.6
-
33
-
-
0026682657
-
Transcription factors: Structural families and principles of DNA recognition
-
Pabo, C. O., and R. T. Sauer. 1992. Transcription factors: structural families and principles of DNA recognition. Annu. Rev. Biochem. 61:1053-1095.
-
(1992)
Annu. Rev. Biochem.
, vol.61
, pp. 1053-1095
-
-
Pabo, C.O.1
Sauer, R.T.2
-
34
-
-
0035336771
-
Bacillus subtilis CodY represses early-stationary-phase genes by sensing GTP levels
-
Ratnayake-Lecamwasam, M., P. Serror, K. W. Wong, and A. L. Sonenshein. 2001. Bacillus subtilis CodY represses early-stationary-phase genes by sensing GTP levels. Genes Dev. 15:1093-1103.
-
(2001)
Genes Dev.
, vol.15
, pp. 1093-1103
-
-
Ratnayake-Lecamwasam, M.1
Serror, P.2
Wong, K.W.3
Sonenshein, A.L.4
-
35
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1989)
Molecular Cloning: A Laboratory Manual. 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
37
-
-
0022360261
-
The three-dimensional structure of trp repressor
-
Schevitz, R. W., Z. Otwinowski, A. Joachimiak, C. L. Lawson, and P. B. Sigler. 1985. The three-dimensional structure of trp repressor. Nature 317:782-786.
-
(1985)
Nature
, vol.317
, pp. 782-786
-
-
Schevitz, R.W.1
Otwinowski, Z.2
Joachimiak, A.3
Lawson, C.L.4
Sigler, P.B.5
-
38
-
-
0029837946
-
CodY is required for nutritional repression of Bacillus subtilis genetic competence
-
Serror, P., and A. L. Sonenshein. 1996. CodY is required for nutritional repression of Bacillus subtilis genetic competence. J. Bacteriol. 178:5910-5915.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5910-5915
-
-
Serror, P.1
Sonenshein, A.L.2
-
39
-
-
0029999864
-
Interaction of CodY, a novel Bacillus subtilis DNA-binding protein, with the dpp promoter region
-
Serror, P., and A. L. Sonenshein. 1996. Interaction of CodY, a novel Bacillus subtilis DNA-binding protein, with the dpp promoter region. Mol. Microbiol. 20:843-852.
-
(1996)
Mol. Microbiol.
, vol.20
, pp. 843-852
-
-
Serror, P.1
Sonenshein, A.L.2
-
40
-
-
3242880574
-
Activation of the Bacillus subtilis global regulator CodY by direct interaction with branched-chain amino acids
-
Shivers, R. P., and A. L. Sonenshein. 2004. Activation of the Bacillus subtilis global regulator CodY by direct interaction with branched-chain amino acids. Mol. Microbiol. 53:599-611.
-
(2004)
Mol. Microbiol.
, vol.53
, pp. 599-611
-
-
Shivers, R.P.1
Sonenshein, A.L.2
-
41
-
-
0027198224
-
Mutations that relieve nutritional repression of the Bacillus subtilis dipeptide permease operon
-
Slack, F. J., J. P. Mueller, and A. L. Sonenshein. 1993. Mutations that relieve nutritional repression of the Bacillus subtilis dipeptide permease operon. J. Bacteriol. 175:4605-4614.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 4605-4614
-
-
Slack, F.J.1
Mueller, J.P.2
Sonenshein, A.L.3
-
42
-
-
0025873658
-
Transcriptional regulation of a Bacillus subtilis dipeptide transport operon
-
Slack, F. J., J. P. Mueller, M. A. Strauch, C. Mathiopoulos, and A. L. Sonenshein. 1991. Transcriptional regulation of a Bacillus subtilis dipeptide transport operon. Mol. Microbiol. 5:1915-1925.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 1915-1925
-
-
Slack, F.J.1
Mueller, J.P.2
Strauch, M.A.3
Mathiopoulos, C.4
Sonenshein, A.L.5
-
43
-
-
0028968835
-
A gene required for nutritional repression of the Bacillus subtilis dipeptide permease operon
-
Slack, F. J., P. Serror, E. Joyce, and A. L. Sonenshein. 1995. A gene required for nutritional repression of the Bacillus subtilis dipeptide permease operon. Mol. Microbiol. 15:689-702.
-
(1995)
Mol. Microbiol.
, vol.15
, pp. 689-702
-
-
Slack, F.J.1
Serror, P.2
Joyce, E.3
Sonenshein, A.L.4
-
44
-
-
0028941345
-
Bent DNA is found in some, but not all, regions recognized by the Bacillus subtilis AbrB protein
-
Strauch, M. A., and M. Ayazifar. 1995. Bent DNA is found in some, but not all, regions recognized by the Bacillus subtilis AbrB protein. Mol. Gen. Genet. 246:756-760.
-
(1995)
Mol. Gen. Genet.
, vol.246
, pp. 756-760
-
-
Strauch, M.A.1
Ayazifar, M.2
-
45
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
46
-
-
0036093944
-
The Tol/Pal system function requires an interaction between the C-terminal domain of TolA and the N-terminal domain of TolB
-
Walburger, A., C. Lazdunski, and Y. Corda. 2002. The Tol/Pal system function requires an interaction between the C-terminal domain of TolA and the N-terminal domain of TolB. Mol. Microbiol. 44:695-708.
-
(2002)
Mol. Microbiol.
, vol.44
, pp. 695-708
-
-
Walburger, A.1
Lazdunski, C.2
Corda, Y.3
-
47
-
-
0035103512
-
Solution structure of the DNA-binding domain of the TyrR protein of Haemophilus influenzas
-
Wang, Y., S. Zhao, R. L. Somerville, and O. Jardetzky. 2001. Solution structure of the DNA-binding domain of the TyrR protein of Haemophilus influenzas. Protein Sci. 10:592-598.
-
(2001)
Protein Sci.
, vol.10
, pp. 592-598
-
-
Wang, Y.1
Zhao, S.2
Somerville, R.L.3
Jardetzky, O.4
-
48
-
-
0027408011
-
A genetic analysis of various functions of the TyrR protein of Escherichia coli
-
Yang, J., S. Ganesan, J. Sarsero, and A. J. Pittard. 1993. A genetic analysis of various functions of the TyrR protein of Escherichia coli. J. Bacteriol. 175:1767-1776.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 1767-1776
-
-
Yang, J.1
Ganesan, S.2
Sarsero, J.3
Pittard, A.J.4
-
49
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
|