Structural analysis of a gene cluster encoding two cationic and three anionic peroxidases from rice chromosome 4

Acta Biochimica et Biophysica Sinica

Volumn 33, Issue 2, 2001, Pages 171-172

  Chen, Ze Hua ^a   Zhou, Bo ^a   Han, Bin ^a   Qian, Yue Min ^a   Hong, Guo Fan ^a  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

Gene cluster; Ortholog; Peroxidase; Tandemly gene duplication

Indexed keywords

EID: 20444420938     PISSN: 05829879     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (29)

1. Dunford H B. Horseradish peroxidase: Structure and kinetic properties. Everse J, Everse K E, Grisham M B eds. Peraxidases in Chemistry and Biology, Boca Raton: CRC press, 1991, 2: 1-23
2. Welinder K G. Superfamily of plant, fungal and bacterial peroxidase. Curr Opin Struct Biol, 1992, 2: 388-393
3. Justesen A F, Jespersen H M, Welinder K G. Analysis of two incompletely spliced Arabidopsis cDNAs encoding novel types of peroxidase. Biochi et Biophy Acta, 1998, 1443: 149-154
4. Sutliff T D, Huang N, Litts J C, Rodriguez R L. Characterization of an α-amylase multigene cluster in rice. Plant Molec Biol, 1991, 16: 579-591
5. Dean C, Pichersky E, Dunsmuir P. Structure, evolution, and regulation of rbcs genes in higher plants. Annu Rev Plant Physiol Plant Molec Biol, 1989, 40: 415-439
6. Hillebrand H, Bartling D, Weiler E W. Structural analysis of the nit2/nit1/nit3 gene cluster encoding nitrilases, enzymes catalyzing the terminal activation step in indole-acetic acid biosynthesis in Arabidopsis thaliana. Plant Molec Biol, 1998, 36: 89-99
7. He Z H, Cheeseman I, He D, Kohorn B D. A cluster of five cell wall-associated receptor kinase genes, wak1-5, are expressed in specific organs of Arabidopsis. Plant Molec Biol, 1999, 39: 1189-1196
8. Maeda N, Smithies O. The evolution of multigene families: Human haptoglobin genes. Ann Rev Genet, 1986, 20: 81-108
9. Johansson T, Nyman P O. A cluster of genes encoding major isozymes of ligin peroxidase and manganese peroxidase from the white-rot fungus Trametes versicolor. Gene, 1996, 170: 31-38
10. Osakabe K, Koyama H, Kawai S, Katayama Y, Morohoshi N. Molecular cloning of two tandemly arranged peroxidase genes from Populus kitakamiensis and their differential regulation in the stem. Plant Molec Biol, 1995, 28: 677-689
11. 2 population. Genetics, 1998, 148: 479-494
12. Hong G, Qian Y, Yu S, Hu X, Zhu J, Tao W, Li W et al. A 120 kilobase resolution contig map of the rice genome. DNA Seq, 1997, 7(6): 319-335
13. Roach J C, Boysen C, Wang K, Hood L. Pairwise end sequencing: A unified approach to genomic mapping and sequencing. Genomics, 1995, 26(2): 345-353
14. Ewing B, Hillier L, Wendl M C, Green P. Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res, 1998, 8(3): 175-185
15. Ewing B, Green P. Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res, 1998, 8(3): 186-194
16. Altschul S F, Madden T L, Schaffer A A, Zhang J, Zhang Z, Miller W, Lipman D J. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res, 1997, 25(17): 3389-3402
17. Fickett J W. Recognition of protein coding regions in DNA sequences. Nucleic Acids Res, 1982, 10(17): 5303-5318
18. Burge C, Karlin S. Prediction of complete gene structures in human genomic DNA. J Mol Biol, 1997, 268: 78-94
19. Bailey L C, Searls D B, Overton G C. Analysis of EST-driven annotation in human genomic sequence. Genome Res, 1998, 8: 362-376
20. Luehrsen K R, Walbot V. Addition of A- and U-rich sequence increases the splicing efficiency of a deleted form of a maize intr̀on. Plant Molec Biol, 1994, 24(3): 449-463
21. Welinder K G. Plant peroxidases. Their primary, secondary and tertiary structures, and relation to cytochrome peroxidase. Eur J Biochem, 1985, 151: 497-504
22. Teichmann T, Guan C, Kristoffersen P, Muster G, Tietz O, Palme K. Cloning and biochemical characterization of an anionic peroxidase from Zea mays. Eur J Biochem, 1997, 247: 826-832
23. Kristensen U K, Bloch H, Rasmussen S K. Barley coleoptile peroxidases. Purification, molecular cloning, and induction by pathogens. Plant Physiol, 1999, 120(2): 501-512
24. Johansson A, Rasmussen S K, Harthill J E, Welinder K G. cDNA, amino acid and carbohydrate sequence of barley seed-spcific peroxidase BP1. Plant Molec Biol, 1992, 18: 1151-1161
25. Rebmann G, Hertig C, Bull J, Mauch F, Dudler R. Cloning and sequencing of cDNAs encoding a pathogen-induced putative peroxidase of wheat (Triticum aestivum L). Plant Molec Biol, 1991, 16(2): 329-331
26. Lagrimini L M, Burkhart W, Moyer M, Rothstein S. Molecular cloning of complementary DNA encoding the lignin-forming peroxidase from tobacco: Molecular analysis and tissue-specific expression. Proc Natl Acad Sci USA, 1987, 84: 7542-7546
27. Fujiyama K, Takemura H, Shibayama S, Kobayashi K, Choi J K, Shinmyo A, Takano M et al. Structure of the horseradish peroxidase isozyme c genes. Eur J Biochem, 1988, 173: 681-687
28. Roberts E, Kolattukudy P E. Molecular cloning, nucleotide sequence, and abscisic acid induction of a suberization-associated highly anionic peroxidase. Mol Gen Genet, 1989, 217(2-3): 223-232
29. Frugoli J A, McPeek M A, Thomas T L, McClung C R. Intron loss and gain during evolution of the catalase family in angiosperms. Genetics, 1998, 149: 355-365