-
2
-
-
0028950817
-
Characterizing the microenvironment surrounding protein sites
-
Bagley, S.C. and Altman, R.B. (1995) Characterizing the microenvironment surrounding protein sites. Protein Sci., 4, 622-635.
-
(1995)
Protein Sci.
, vol.4
, pp. 622-635
-
-
Bagley, S.C.1
Altman, R.B.2
-
3
-
-
0030623823
-
Direct evaluation of thermal fluctuations in protein using a single parameter harmonic potential
-
Bahar, I., Atilgan, A.R. and Erman, B. (1997) Direct evaluation of thermal fluctuations in protein using a single parameter harmonic potential. Fold. Des., 2, 173-181.
-
(1997)
Fold. Des.
, vol.2
, pp. 173-181
-
-
Bahar, I.1
Atilgan, A.R.2
Erman, B.3
-
4
-
-
0000496772
-
Vibrational dynamics of proteins: Significance of slow and fast modes in relation to function and stability
-
Bahar, I., Atilgan, A.R., Demirel, M.C. and Erman, B. (1998) Vibrational dynamics of proteins: significance of slow and fast modes in relation to function and stability. Phys. Rev. Lett., 80, 2733-2736.
-
(1998)
Phys. Rev. Lett.
, vol.80
, pp. 2733-2736
-
-
Bahar, I.1
Atilgan, A.R.2
Demirel, M.C.3
Erman, B.4
-
5
-
-
3342877839
-
Collective motions of HIV-1 reverse transcriptase. Examination of flexibility and enzyme function
-
Bahar, I., Erman, B., Jernigan, R.L., Atilgan, A.R. and Covell, D.G. (1999) Collective motions of HIV-1 reverse transcriptase. Examination of flexibility and enzyme function. J. Mol. Biol., 285, 1023-1037.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1023-1037
-
-
Bahar, I.1
Erman, B.2
Jernigan, R.L.3
Atilgan, A.R.4
Covell, D.G.5
-
6
-
-
0027216384
-
The ENZYME data bank
-
Bairoch,A. (1993) The ENZYME data bank. Nucleic Acids Res., 21, 3155-3156.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3155-3156
-
-
Bairoch, A.1
-
7
-
-
0036435882
-
Analysis of catalytic residues in enzyme active sites
-
Bartlett, G.J., Porter, C.T., Borkakoti, N. and Thornton, J.M. (2002) Analysis of catalytic residues in enzyme active sites. J. Mol. Biol., 324, 105-121.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 105-121
-
-
Bartlett, G.J.1
Porter, C.T.2
Borkakoti, N.3
Thornton, J.M.4
-
8
-
-
0033954256
-
The protein data bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
9
-
-
2942684657
-
Induction of association rules: Apriori implementation
-
Physica Verlag, Heidelberg, Berlin, Germany
-
Borgelt, C. and Kruse, R. (2002) Induction of association rules: Apriori implementation. 15th Conference on Computational Statistics (Compstat 2002), Physica Verlag, Heidelberg, Berlin, Germany.
-
(2002)
15th Conference on Computational Statistics (Compstat 2002)
-
-
Borgelt, C.1
Kruse, R.2
-
10
-
-
0037172967
-
TRILOGY: Discovery of sequence-structure patterns across diverse proteins
-
Bradley, P., Kim, P.S. and Berger, B. (2002) TRILOGY: discovery of sequence-structure patterns across diverse proteins. Proc. Natl Acad. Sci., USA, 13, 8500-8505.
-
(2002)
Proc. Natl Acad. Sci., USA
, vol.13
, pp. 8500-8505
-
-
Bradley, P.1
Kim, P.S.2
Berger, B.3
-
11
-
-
0032555696
-
Prediction of local structure in proteins using a library of sequence-structure motifs
-
Bystroff, C. and Baker, D. (1998) Prediction of local structure in proteins using a library of sequence-structure motifs. J. Mol. Biol., 281, 565-577.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 565-577
-
-
Bystroff, C.1
Baker, D.2
-
12
-
-
0002401815
-
Discovery of multiple-level association from large database
-
Zurich, Switzerland, September 1995
-
5, Zurich, Switzerland, September 1995. pp. 420-431.
-
(1995)
5
, pp. 420-431
-
-
Han, J.1
Fu, Y.2
-
14
-
-
0035996990
-
Dynamics of proteins in crystals: Comparison of experiment with simple models
-
Kundu, S., Melton, J.S., Sorensen, D.C. and Phillips, G.N. (2002) Dynamics of proteins in crystals: comparison of experiment with simple models. Biophys. J., 83, 723-732.
-
(2002)
Biophys. J.
, vol.83
, pp. 723-732
-
-
Kundu, S.1
Melton, J.S.2
Sorensen, D.C.3
Phillips, G.N.4
-
15
-
-
0042622410
-
WebFEATURE: An interactive web tool for identifying and visualizing functional sites on macromolecular structures
-
Liang, M.P., Banatao, D.R., Klein, T.E., Brutlag, D.E. and Altman, R.B. (2003) WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures. Nucleic Acids Res., 13, 3324-3327.
-
(2003)
Nucleic Acids Res.
, vol.13
, pp. 3324-3327
-
-
Liang, M.P.1
Banatao, D.R.2
Klein, T.E.3
Brutlag, D.E.4
Altman, R.B.5
-
16
-
-
0037250308
-
PDB-REPRDB: A database of representative protein chains from the Protein Data Bank (PDB) in 2003
-
Noguchi, T. and Akiyama, Y. (2003) PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003. Nucleic Acids Res., 1, 492-493.
-
(2003)
Nucleic Acids Res.
, vol.1
, pp. 492-493
-
-
Noguchi, T.1
Akiyama, Y.2
-
17
-
-
0002977009
-
An Algorithm for 3D substructure matching of proteins
-
Califano, A., Rigoutsos, I. and Wolson, M.J. (eds), Seattle, Plenum Publishing
-
Pennec, X. and Ayache, X. (1994) An Algorithm for 3D substructure matching of proteins. In Califano, A., Rigoutsos, I. and Wolson, M.J. (eds), Shape and Pattern Matching in Computational Biology. Proceedings of First International workshop. Seattle, Plenum Publishing, pp. 25-40.
-
(1994)
Shape and Pattern Matching in Computational Biology. Proceedings of First International Workshop
, pp. 25-40
-
-
Pennec, X.1
Ayache, X.2
-
18
-
-
0027479821
-
Evolutionary families of peptidases
-
Rawlings, N.D. and Barrett, A.J. (1993) Evolutionary families of peptidases. Biochem. J., 290, 205-218.
-
(1993)
Biochem. J.
, vol.290
, pp. 205-218
-
-
Rawlings, N.D.1
Barrett, A.J.2
-
19
-
-
0032568859
-
Detection of protein three-dimensional side-chain patterns: New examples of convergent evolution
-
Russell, R.B. (1998) Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution. J. Mol. Biol., 5, 1211-1227.
-
(1998)
J. Mol. Biol.
, vol.5
, pp. 1211-1227
-
-
Russell, R.B.1
-
20
-
-
0037424601
-
A model for statistical significance of local similarities in structure
-
Stark, A., Sunyaev, S. and Russell, R.B. (2003) A model for statistical significance of local similarities in structure. J. Mol. Biol., 5, 1307-1316.
-
(2003)
J. Mol. Biol.
, vol.5
, pp. 1307-1316
-
-
Stark, A.1
Sunyaev, S.2
Russell, R.B.3
-
21
-
-
0041620372
-
Annotation in three dimensions. PINTS: Patterns in non-homologous tertiary structures
-
Stark, A. and Russell, R.B. (2003) Annotation in three dimensions. PINTS: patterns in non-homologous tertiary structures. Nucleic Acids Res., 13, 3341-3344.
-
(2003)
Nucleic Acids Res.
, vol.13
, pp. 3341-3344
-
-
Stark, A.1
Russell, R.B.2
-
22
-
-
0030724039
-
TESS: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases: Application to enzyme active sites
-
Wallace, A.C., Borkakoti, N. and Thornton, J.M. (1997) TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases: application to enzyme active sites. Protein Sci., 6, 2308-2323.
-
(1997)
Protein Sci.
, vol.6
, pp. 2308-2323
-
-
Wallace, A.C.1
Borkakoti, N.2
Thornton, J.M.3
-
23
-
-
0141792364
-
Allosteric changes in protein structures computed by a simple mechanical model: Application to hemoglobin T → R2 transition
-
Xu, C., Tobi, D. and Bahar, I. (2003) Allosteric changes in protein structures computed by a simple mechanical model: application to hemoglobin T → R2 transition. J. Mol. Biol., 333, 153-168.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 153-168
-
-
Xu, C.1
Tobi, D.2
Bahar, I.3
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