Inferred HLA haplotype information for donors from hematopoietic stem cells donor registries

Human Immunology

Volumn 66, Issue 5, 2005, Pages 563-570

  Gourraud, Pierre Antoine ^a   Lamiraux, Phillipe ^b   El Kadhi, Nabil ^b   Raffoux, Colette ^c   Cambon Thomsen, Anne ^a  

^a INSERM   (France)

^b L E R I A Laboratoire   (France)

^c French Registry of Hematopoïetic Cells Donors ^*  (France)

Author keywords

Donor registry; HLA haplotypes; Population immunogenetics; Statistical application; Transplantation

Indexed keywords

HLA A ANTIGEN; HLA ANTIGEN; HLA B ANTIGEN; HLA DR ANTIGEN;

ARTICLE; GENE LINKAGE DISEQUILIBRIUM; GENETIC CORRELATION; GENETIC SCREENING; GENOTYPE PHENOTYPE CORRELATION; HAPLOTYPE; HEMATOPOIETIC STEM CELL TRANSPLANTATION; HLA MATCHING; HOMOZYGOSITY; PREDICTION; PRIORITY JOURNAL; PROBABILITY; REGISTER; STATISTICAL ANALYSIS; VALIDATION PROCESS;

ALGORITHMS; FRANCE; GENE FREQUENCY; HAPLOTYPES; HEMATOPOIETIC STEM CELLS; HLA ANTIGENS; HOMOZYGOTE; HUMANS; LINKAGE DISEQUILIBRIUM; MODELS, GENETIC; MODELS, STATISTICAL; PHENOTYPE; REGISTRIES; TISSUE DONORS;

EID: 20444377707     PISSN: 01988859     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.humimm.2005.01.011     Document Type: Article

References (24)

1. T.I. Mughal, J.M. Goldman Chronic myeloid leukaemia current status and controversies Oncology (Huntingt) 18 2004 837
2. E.W. Petersdorf, C. Anasetti, P.J. Martin, T. Gooley, J. Radich, M. Malkki, A. Woolfrey, A. Smith, E. Mickelson, J.A. Hansen Limits of HLA mismatching in unrelated hematopoietic cell transplantation Blood 104 2004 2976
3. E.W. Petersdorf, C. Anasetti, P.J. Martin, J.A. Hansen Tissue typing in support of unrelated hematopoietic cell transplantation Tissue Antigens 61 2003 1
4. J.A. Hansen, K. Yamamoto, E. Petersdorf, T. Sasazuki The role of HLA matching in hematopoietic cell transplantation Rev Immunogenet 1 1999 359
5. E.W. Petersdorf, E.M. Mickelson, C. Anasetti, P.J. Martin, A.E. Woolfrey, J.A. Hansen Effect of HLA mismatches on the outcome of hematopoietic transplants Curr Opin Immunol 11 1999 521
6. P.A. Gourraud, E. Genin, A. Cambon-Thomsen Handling missing values in population data consequences for maximum likelihood estimation of haplotype frequencies Eur J Hum Genet 12 2004 805
7. C. Lonjou, J. Clayton, A. Cambon-Thomsen, C. Raffoux HLA -A, -B, -DR haplotype frequencies in France - implications for recruitment of potential bone marrow donors Transplantation 60 1995 375
8. M. Martinetti, A. Degioanni, A.M. D'Aronzo, E. Benazzi, R. Carpanelli, L. Castellani, S. Cenzuales, U. De Biase, C. De Filippo, A. De Giuli, A. Gerosa, M. Fare, G. Ferrioli, G. Galvani, C. Lombardo, A. Malagoli, S. Marchesi, L. Mascaretti, F. Motta, V. Sioli, C. Rinaldini, L. Rizzolo, C. Pascutto, L. Bernardinelli, L. Salvaneschi An immunogenetic map of Lombardy (Northern Italy) Ann Hum Genet 66 2002 37
9. C.R. Muller, G. Ehninger, S.F. Goldmann Gene and haplotype frequencies for the loci HLA-A, HLA-B, and HLA-DR based on over 13,000 german blood donors Hum Immunol 64 2003 137
10. S. Rendine, I. Borelli, M. Barbanti, N. Sacchi, S. Roggero, E.S. Curtoni HLA polymorphisms in Italian bone marrow donors a regional analysis Tissue Antigens 52 1998 135
11. A. Piazza Haplotypes and linkage disequilibrium from three-locus phenotypes Histocompatibility Testing 1975 Kissmeyer-Nielsen Munksgaard 923 eds, Copenhagen
12. N. Yasuda Estimation of haplotype frequency and linkage disequilibrium parameter in the HLA system Tissue Antigens 12 1978 315
13. N.E. Morton, S.P. Simpson, R. Lew, S. Yee Estimation of haplotype frequencies Tissue Antigens 22 1983 257
14. T.L. Bugawan, W. Klitz, A. Blair, H.A. Erlich High-resolution HLA class I typing in the CEPH families analysis of linkage disequilibrium among HLA loci Tissue Antigens 56 2000 392
15. H.J. Cordell, D.G. Clayton A unified stepwise regression procedure for evaluating the relative effects of polymorphisms within a gene using case/control or family data application to HLA in type 1 diabetes Am J Hum Genet 70 2002 124
16. D.J. Schaid, C.M. Rowland, D.E. Tines, R.M. Jacobson, G.A. Poland Score tests for association between traits and haplotypes when linkage phase is ambiguous Am J Hum Genet 70 2002 425
17. C.F. Xu, K. Lewis, K.L. Cantone, P. Khan, C. Donnelly, N. White, N. Crocker, P.R. Boyd, D.V. Zaykin, I.J. Purvis Effectiveness of computational methods in haplotype prediction Hum Genet 110 2002 148
18. S.H. Orzack, D. Gusfield, J. Olson, S. Nesbitt, L. Subrahmanyan, V.P. Stanton Jr Analysis and exploration of the use of rule-based algorithms and consensus methods for the inferral of haplotypes Genetics 165 2003 915
19. R.F. Schipper, M. Oudshoorn, J. D'Amaro, H.G. van der Zanden, P. de Lange, J.T. Bakker, J. Bakker, J.J. van Rood Validation of large data sets, an essential prerequisite for data analysis an analytical survey of the Bone Marrow Donors Worldwide Tissue Antigens 47 1996 169
20. M. Mori, M. Graves, E.L. Milford, P.G. Beatty Computer program to predict likelihood of finding and HLA-matched donor methodology, validation, and application Biol Blood Marrow Transplant 2 1996 134
21. C. Kollman, E. Abella, R.L. Baitty, P.G. Beatty, R. Chakraborty, C.L. Christiansen, R.J. Hartzman, C.K. Hurley, E. Milford, J.A. Nyman, T.J. Smith, G.E. Switzer, R.K. Wada, M. Setterholm Assessment of optimal size and composition of the U.S. National Registry of hematopoietic stem cell donors Transplantation 78 2004 89
22. D. Fallin, N.J. Schork Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data Am J Hum Genet 67 2000 947
23. G.K. Tay, C.S. Witt, F.T. Christiansen, D. Charron, D. Baker, R. Herrmann, L.K. Smith, D. Diepeveen, S. Mallal, J. McCluskey Matching for MHC haplotypes results in improved survival following unrelated bone marrow transplantation Bone Marrow Transplant 15 1995 381
24. F.T. Christiansen, C.S. Witt, R.L. Dawkins Questions in marrow matching the implications of ancestral haplotypes for routine practice Bone Marrow Transplant 8 1991 83