Transcript profiling in plastid arginine tRNA-CCG gene knockout moss: Construction of Physcomitrella patens plastid DNA microarray

Plant Biology

Volumn 7, Issue 3, 2005, Pages 258-265

  Nakamura, T ^a   Sugiura, C ^a   Kobayashi, Y ^a   Sugita, M ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

Chloroplast; Microarray; Physcomitrella patens; Transcript profiling

Indexed keywords

PLANT RNA; PRIMER DNA; TRANSFER RNA;

MOSS;

ARTICLE; BRYOPSIDA; DNA MICROARRAY; GENE DELETION; GENETICS; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; PLASTID;

BASE SEQUENCE; BRYOPSIDA; DNA PRIMERS; GENE DELETION; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLASTIDS; RNA, PLANT; RNA, TRANSFER; SEQUENCE DELETION;

BRYOPHYTA; PHYSCOMITRELLA PATENS;

EID: 20144384255     PISSN: 14358603     EISSN: None     Source Type: Journal    
DOI: 10.1055/s-2005-865620     Document Type: Article

References (14)

1. Erickson, B., Stern, D. B., and Higgs, D. C. (2005) Microarray analysis confirms the specificity of a Chlamydomonas reinhardtii chloroplast RNA stability mutant. Plant Physiology 137, 534-544.
2. Kenrick, P. and Crane, P. R. (1997) The origin and early evolution of plants on land. Nature 389, 33-39.
3. Legen, J., Kemp, S., Krause, K., Profanter, B., Herrmann, R. G., and Maier, R. M. (2002) Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wildtype and PEP-deficient transcription machineries. The Plant Journal 31, 171-188.
4. Maliga, P. (2004) Plastid transformation in higher plants. Annual Review of Plant Biology 55, 289-313.
5. Maniatis, T., Fritsch, E. M., and Sambroook, J. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Press.
6. Miyata, Y., Sugiura, C., Kobayashi, Y., Hagiwara, M., and Sugita, M. (2002) Chloroplast ribosomal S14 protein transcript is edited to create a translation initiation codon in the moss Physcomitrella patens. Biochimica et Biophysica Acta 1576, 346-349.
7. Nakamura, T., Furuhashi, Y., Hasegawa, K., Hashimoto, H., Watanabe, K., Obokata, J., Sugita, M., and Sugiura, M. (2003) Array-based analysis on tobacco plastid transcripts: preparation of a genomic microarray containing all genes and all intergenic regions. Plant and Cell Physiology 44, 861-867.
8. Qiu, Y. L. and Palmer, J. D. (1999) Phylogeny of early land plants: insights from genes and genomes. Trends in Plant Science 4, 26-30.
9. Quackenbush, J. (2002) Microarray data normalization and transformation. Nature Genetics 32, 496-501.
10. Schaefer, D. G. (2001) Gene targeting in Physcomitrella patens. Current Opinion of Plant Biology 4, 143-150.
11. Schaefer, D. G. and Zrÿd, J. P. (1997) Efficient gene targeting in the moss Physcomitrella patens. The Plant Journal 11, 1195-1206.
12. Arg-CCG is not essential for plastid function. The Plant Journal 40, 314-321.
13. Sugiura, C., Kobayashi, Y., Aoki, S., Sugita, C., and Sugita, M. (2003) Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus. Nucleic Acids Research 31, 5324-5331.
14. Svab, Z. and Maliga, P. (1993) High-frequency plastid transformation in tobacco by selection for a chimeric aadA gene. Proceedings of the National Academy of Sciences of the USA 90, 913-917.