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Volumn 44, Issue 8, 2003, Pages 861-867

Array-based analysis on tobacco plastid transcripts: Preparation of a genomic microarray containing all genes and all intergenic regions

Author keywords

DNA microarray; Gene transcription profiling; Photosynthesis; Plastid; Small RNA

Indexed keywords

DNA, PLANT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLASTIDS; RNA, PLANT; TOBACCO;

EID: 0042785585     PISSN: 00320781     EISSN: None     Source Type: Journal    
DOI: 10.1093/pcp/pcg101     Document Type: Article
Times cited : (29)

References (21)
  • 1
    • 0024077065 scopus 로고
    • Proteins encoded by a complex chloroplast transcription unit are each translated from both monocistronic and polycistronic RNAs
    • Barkan, A. (1988) Proteins encoded by a complex chloroplast transcription unit are each translated from both monocistronic and polycistronic RNAs. EMBO J. 7: 2637-2644.
    • (1988) EMBO J. , vol.7 , pp. 2637-2644
    • Barkan, A.1
  • 2
    • 0033860532 scopus 로고    scopus 로고
    • Participation of nuclear genes in chloroplast gene expression
    • Barkan, A. and Goldschmidt-Clermont, M. (2000) Participation of nuclear genes in chloroplast gene expression. Biochimie 82: 559-572.
    • (2000) Biochimie , vol.82 , pp. 559-572
    • Barkan, A.1    Goldschmidt-Clermont, M.2
  • 3
    • 0032996802 scopus 로고    scopus 로고
    • DNA microarrays for studies of higher plants and other photosynthetic organisms
    • Kehoe, D.M., Villand, P. and Somerville, S. (1999) DNA microarrays for studies of higher plants and other photosynthetic organisms. Trends Plant Sci. 4: 38-41.
    • (1999) Trends Plant Sci. , vol.4 , pp. 38-41
    • Kehoe, D.M.1    Villand, P.2    Somerville, S.3
  • 4
    • 0036544755 scopus 로고    scopus 로고
    • Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation
    • Lai, E.C. (2002) Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation. Nat. Genet. 30: 363-364.
    • (2002) Nat. Genet. , vol.30 , pp. 363-364
    • Lai, E.C.1
  • 5
    • 0036329026 scopus 로고    scopus 로고
    • Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries
    • Legen, J., Kemp, S., Krause, K., Profanter, B., Herrmann, R.G. and Maier, R.M. (2002) Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries. Plant J. 31: 171-188.
    • (2002) Plant J. , vol.31 , pp. 171-188
    • Legen, J.1    Kemp, S.2    Krause, K.3    Profanter, B.4    Herrmann, R.G.5    Maier, R.M.6
  • 6
    • 0036844771 scopus 로고    scopus 로고
    • The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli
    • Lilly, J.W., Maul, J.E. and Stern, D.B. (2002) The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli. Plant Cell 14: 2681-2706.
    • (2002) Plant Cell , vol.14 , pp. 2681-2706
    • Lilly, J.W.1    Maul, J.E.2    Stern, D.B.3
  • 8
    • 0033861250 scopus 로고    scopus 로고
    • Processing and degradation of chloroplast mRNA
    • Monde, R.A., Schuster, G. and Stern, D.B. (2000) Processing and degradation of chloroplast mRNA. Biochimie 82: 573-582.
    • (2000) Biochimie , vol.82 , pp. 573-582
    • Monde, R.A.1    Schuster, G.2    Stern, D.B.3
  • 9
    • 0026808514 scopus 로고
    • Quantitative analysis of transcription and RNA levels of 15 barley chloroplast genes. Transcription rates and mRNA levels vary over 300-fold; predicted mRNA stabilities vary 30-fold
    • Rapp, J.C., Baumgartner, B.J. and Mullet, J. (1992) Quantitative analysis of transcription and RNA levels of 15 barley chloroplast genes. Transcription rates and mRNA levels vary over 300-fold; predicted mRNA stabilities vary 30-fold. J. Biol. Chem. 267: 21404-21411.
    • (1992) J. Biol. Chem. , vol.267 , pp. 21404-21411
    • Rapp, J.C.1    Baumgartner, B.J.2    Mullet, J.3
  • 11
    • 0035891661 scopus 로고    scopus 로고
    • Prokaryotic RNA preparation methods useful for high density array analysis: Comparison of two approaches
    • Rosenow, C., Saxena, R.M., Durst, M. and Gingeras, T.R. (2001) Prokaryotic RNA preparation methods useful for high density array analysis: comparison of two approaches. Nucleic Acids Res. 29: E112.
    • (2001) Nucleic Acids Res. , vol.29
    • Rosenow, C.1    Saxena, R.M.2    Durst, M.3    Gingeras, T.R.4
  • 14
    • 0031424235 scopus 로고    scopus 로고
    • Targeted deletion of sprA from the tobacco plastid genome indicates that the encoded small RNA is not essential for pre-16S rRNA maturation in plastids
    • Sugita, M., Svab, Z., Maliga, P. and Sugiura, M. (1997) Targeted deletion of sprA from the tobacco plastid genome indicates that the encoded small RNA is not essential for pre-16S rRNA maturation in plastids. Mol. Gen. Genet. 257: 23-27.
    • (1997) Mol. Gen. Genet. , vol.257 , pp. 23-27
    • Sugita, M.1    Svab, Z.2    Maliga, P.3    Sugiura, M.4
  • 15
    • 0026860017 scopus 로고
    • The chloroplast genome
    • Sugiura, M. (1992) The chloroplast genome. Plant Mol. Biol. 19: 149-168.
    • (1992) Plant Mol. Biol. , vol.19 , pp. 149-168
    • Sugiura, M.1
  • 16
    • 0001660945 scopus 로고
    • Clone bank of the tobacco (Nicotiana tabacum) chloroplast genome as a set of overlapping restriction endonuclease fragments: Mapping of eleven ribosomal protein genes
    • Sugiura, M., Shinozaki, K., Zaita, N., Kusuda, M. and Kumano, M. (1986) Clone bank of the tobacco (Nicotiana tabacum) chloroplast genome as a set of overlapping restriction endonuclease fragments: mapping of eleven ribosomal protein genes. Plant Sci. 44: 211-216.
    • (1986) Plant Sci. , vol.44 , pp. 211-216
    • Sugiura, M.1    Shinozaki, K.2    Zaita, N.3    Kusuda, M.4    Kumano, M.5
  • 17
    • 23444442226 scopus 로고
    • A novel RNA gene in the tobacco plastid genome: Its possible role in the maturation of 16S rRNA
    • Vera, A. and Sugiura, M. (1994) A novel RNA gene in the tobacco plastid genome: its possible role in the maturation of 16S rRNA. EMBO J. 13: 2211-2217.
    • (1994) EMBO J. , vol.13 , pp. 2211-2217
    • Vera, A.1    Sugiura, M.2
  • 19
    • 0035711657 scopus 로고    scopus 로고
    • The genomics of land plant chloroplasts: Gene content and alternation of genomic information by RNA editing
    • Wakasugi, T., Tsudzuki, T. and Sugiura, M. (2001) The genomics of land plant chloroplasts: Gene content and alternation of genomic information by RNA editing. Photosynth. Res. 70: 107-118.
    • (2001) Photosynth. Res. , vol.70 , pp. 107-118
    • Wakasugi, T.1    Tsudzuki, T.2    Sugiura, M.3
  • 20
    • 0037133946 scopus 로고    scopus 로고
    • Small RNAs in bacteria: Diverse regulators of gene expression in response to environmental changes
    • Wassarman, K.M. (2002) Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes. Cell 109: 141-144.
    • (2002) Cell , vol.109 , pp. 141-144
    • Wassarman, K.M.1
  • 21
    • 0023953590 scopus 로고
    • Complex RNA maturation in chloroplasts: The psbB operon from spinach
    • Westhoff, P. and Herrmann, R.G. (1988) Complex RNA maturation in chloroplasts: the psbB operon from spinach. Eur. J. Biochem. 171: 551-564.
    • (1988) Eur. J. Biochem. , vol.171 , pp. 551-564
    • Westhoff, P.1    Herrmann, R.G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.