Complete nucleotide sequences of attenuated and severe isolates of Leek yellow stripe virus from garlic in northern Japan: Identification of three distinct virus types in garlic and leek world-wide

Archives of Virology

Volumn 150, Issue 6, 2005, Pages 1135-1149

  Takaki, F ^a   Sano, T ^a   Yamashita, K ^b   Fujita, T ^a   Ueda, K ^a   Kato, T ^a  

^a HIROSAKI UNIVERSITY   (Japan)

^b Aomori Green BioCenter   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

35 KDA PROTEIN, POTYVIRUS; 35-KDA PROTEIN, POTYVIRUS; CAPSID PROTEIN; VIRUS PROTEIN;

5' UNTRANSLATED REGION; ARTICLE; CHINA; CLASSIFICATION; DNA SEQUENCE; GARLIC; GENETICS; JAPAN; KOREA; MOLECULAR CLONING; ONION; PATHOGENICITY; PHYLOGENY; PLANT DISEASE; POTYVIRUS; VIROLOGY;

5' UNTRANSLATED REGIONS; CAPSID PROTEINS; CHINA; CLONING, MOLECULAR; GARLIC; JAPAN; KOREA; ONIONS; PHYLOGENY; PLANT DISEASES; POTYVIRUS; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

ALLIUM PORRUM; ALLIUM SATIVUM; LEEK YELLOW STRIPE POTYVIRUS; POTYVIRUS;

EID: 20144369900     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-004-0482-9     Document Type: Article

References (41)

1. Abe S, Fukosawa T, Satake M, Ogata K (1972) Studies on SDS-phenol methods for extraction of rat liver nuclear RNA. I. purify, recover, and specific radioactivity of pulse labeled nuclear RNA obtained by SDS-phenol extraction under various conditions. J Biochem (Tokyo) 72(3): 561-570
2. Abiko K, Watanabe Y, Nishi Y (1980) Studies on garlic mosaic, I causal virus. Bull Veg Ornam Crops Res Stn Japan Ser A 7: 139-147
3. Abiko K, Watanabe Y, Nishi Y (1980) Studies on garlic mosaic, II Several factors affecting the detection of garlic mosaic virus following juice inoculation. Bull Veg Ornam Crops Res Stn Japan Ser A 7: 149-154
4. Barg E, Lesemann D-E, Vertten HJ, Green SK (1994) Identification, partial characterization, and distribution of viruses infecting Allium crops in south and southeast Asia. Acta Hortic 358: 251-258
5. Bos L, Huijberts N, Huttinga H, Maat DZ (1978) Leek yellow stripe virus and its relationships to onion yellow dwarf virus; characterization, ecology and possible. Neth J Plant Pathol 84: 185-204
6. Bos L (1982) Viruses and virus diseases of Allium species. Acta Hortic 127: 11-29
7. Brierley P, Smith FF (1946) Reaction of onion varieties to yellow dwarf virus and three similar viruses isolated from shallot, garlic and narcissus. Phytopathology 36: 292-296
8. Chen J, Chen J, Adams MJ (2001) Molecular characterisation of a complex mixture of viruses in garlic with mosaic symptoms in China. Arch Virol 146: 1841-1853
9. Chen J, Chen J, Adams MJ (2002) Characterisation of some Carla- and potyviruses from bulb crops in China. Arch Virol 147: 419-428
10. Chen J, Zheng H-Y, Lin L, Adams MJ, Antoniw JF, Zhao M-F, Shang Y-F, Chen J-P (2004) A virus related to Soybean mosaic virus from Pinellia ternate in China and its comparison with local soybean SMV isolates. Arch Virol 149: 349-363
11. Felsenstein J (1993) PHYLIP (Phylogeny Interference Package), version 3.5. Department of Genetics, University of Washington, Seattle, USA
12. Felsenstein J (2004) PHYLIP (Phylogeny Interference Package), version 3.6. Department of Genetics, University of Washington, Seattle, USA
13. Fujita T, Kondo T, Kuramitu K, Sawanura K, Harada Y (1993) Some properties of garlic mosaic virus (GMV) and garlic latent virus (GLV) isolated from garlic plants with mosaic symptoms in Aomori prefecture. Ann Phytopathol Soc Jpn 59: 57 (Abstr in Japanese)
14. Desbiez C, Lecoq H (2004) The nucleotide sequence of Watermelon mosaic virus (WMV, Potyvirus) reveals interspecific recombination between two related potyviruses in the 5′ part of the genome. Arch Virol 149: 1619-1632
15. Jeanmougin F, Thompson JB, Gouy M, Higgins DG, Gibson TJ (1998) Multiple sequence alignment with Clustal X. Trends Biochem Sci 23: 403-405
16. Lee YW, Yamazaki S, Osaki T, Inoue T (1979) Two elongated viruses in garlic, garlic latent virus and garlic mosaic virus. Ann Phytopathol Soc Jpn 45: 727-734
17. Lot H, Delecolle B (1994) Thirty years of France' experience in the production of disease-free garlic and shallot mother bulbs. Acta Hortic 358: 275-279
18. Nagakubo T, Kubo M, Oeda K (1994) Nucleotide sequences of the 3′ regions of two major viruses from mosaic-diseased garlic: molecular evidence of mixed infection by a potyvirus and carlavirus. Phytopathology 84(6): 640-645
19. Noda C, Inoue N (1989) Leek yellow stripe virus isolated from an Ornamental Allium plant in Japan. Ann Phytopathol Soc Jpn 55: 208-215
20. Ohba S (2003) Ninniku. Nouson-gyoson-bunka-kyokai., pp172
21. Sako N (1976) Virus disease in garlic (first report). Ann Phytopathol Soc Jpn 42: 383 (Abstr in Japanese)
22. Sako N (1977) Virus disease in garlic (second report). Ann Phytopathol Soc Jpn 43: 114 (Abstr in Japanese)
23. Salomon R, Koch M, Levy S, Gal-On A (1996) Detection and identification of the viruses forming mixed infection in garlic. BCPC Symposium Proceedings 65: 193-197
24. Sambrook J, Russell DW (2001) Molecular cloning, a laboratory manual. 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
25. Shukla DD, Ward CW (1988) Amino acid sequence homology of coat proteins as a basis for identification of the potyvirus group. J Gen Virol 69: 2703-2710
26. Shukla DD, Ward CW (1989) Identification and classification of potyviruses on the basis of coat protein sequence data and serology. Arch Virol 106: 171-200
27. Shukla DD, Ward CW (1989) Structure of potyvirus coat proteins and its application in the taxonomy of the potyvirus group. Adv Virus Res 36: 273-314
28. Sumi S, Tsuneyoshi T, Furutani H (1993) Novel rod shaped viruses isolated from garlic, Allium sativum, possessing a unique genome organization. J Gen Virol 74: 1879-1885
29. Sward RJ, Brennan AP (1994) Diagnosis and control of Allium virus diseases in Victoria. Acta Hortic 358: 295-298
30. Takaichi M, Yamamoto M, Nagakubo T, Oeda K (1998) Four garlic viruses identified by reverse transcription-polymerase chain reaction and their regional distribution in northern Japan. Plant Dis 82(6): 694-698
31. Tom H (2001) Bio Edit version 5.0.6. Department of Microbiology, North Carolina State University
32. Tsuneyoshi T, Matsumi T, Natsuaki T, Sumi S (1998) Nucleotide sequence analysis of virus isolates indicates the presence of three potyvirus species in Allium plants. Arch Virol 143: 97-113
33. Van Dijk P (1993a) Survey and characterization of potyviruses and their strains of Allium species. Neth J Plant Pathol 99 [Suppl 2]: 1-48
34. Van Dijk P (1993b) Carlavirus isolates from cultivated Allium species represent three viruses. Neth J Plant Pathol 99: 233-257
35. Van Dijk P (1994) Virus diseases of shallot and garlic in Java, and prospects for their control. Acta Hortic 369: 134-143
36. Van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens E, Estes M, Lemon S, Maniloff J, Mayo MA, McGeoch D, Pringle CR, Wickner RB (eds) (2000). Virus taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, New York
37. Yamashita K, Sakai J, Hanada K (1995) Leek yellow stripe virus (LYSV) isolated from garlic and Its relationships to garlic mosaic virus (GMV). Ann Phytopathol Soc Jpn 61: 273 (Abstr in Japanese)
38. Yamashita K, Sakai J, Hanada K (1996) Characterization of a new virus from garlic (Allium sativum L.), garlic mite-borne mosaic virus. Ann Phytopathol Soc Jpn 62: 483-489
39. Yamashita K, Hanada K, Iwai H (1997) Some properties of onion yellow dwarf virus isolated from garlic (Allium sativum). Ann Phytopathol Soc Jpn 63: 195 (Abstr in Japanese)
40. Yamashita K (1998) Survey of viruses of garlic from Aomori prefecture. Ann Phytopathol Soc Jpn 64: 411 (Abstr in Japanese)
41. Zheng H, Chen J, Chen J, Adams MJ, Hou M (2002) Bean common mosaic virus isolates causing different symptoms in asparagus bean in China differ greatly in the 5′-parts of their genomes. Arch Virol 147: 1257-1262