Pathogenic and genetic characterization of Algerian isolates of Fusarium oxysporum f. sp. lentis by RAPD and AFLP analysis

African Journal of Biotechnology

Volumn 3, Issue 1, 2004, Pages 25-31

  Belabid, Lakhdar ^a   Baum, Michael ^b   Fortas, Zohra ^c   Bouznad, Zouaoui ^d   Eujayl, Imad ^b  

^a UNIVERSITÉ DE MASCARA   (Algeria)

^b INTERNATIONAL CENTER FOR AGRICULTURAL RESEARCH IN THE DRY AREAS ICARDA   (Syrian Arab Republic)

^c UNIVERSITY OF ORAN   (Algeria)

^d Institut National Agronomique   (Algeria)

Author keywords

Fusarium wilt; Lens culinaris; Molecular markers; Pathogenicity

Indexed keywords

NUCLEOTIDE;

ALGERIA; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ANALYTIC METHOD; ARTICLE; CLUSTER ANALYSIS; CONTROLLED STUDY; CORRELATION ANALYSIS; FUNGAL GENETICS; FUNGUS ISOLATION; FUSARIUM OXYSPORUM; GENETIC ANALYSIS; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GEOGRAPHY; LENTIL; NONHUMAN; PATHOGENICITY; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA; SCORING SYSTEM;

FUSARIUM OXYSPORUM; FUSARIUM SP.; LENS CULINARIS;

EID: 19744375607     PISSN: 16845315     EISSN: 16845315     Source Type: Journal    
DOI: 10.5897/ajb2004.000-2005     Document Type: Article

References (35)

1. Abbas A (1995). Variation in some cultural and physiological characters and host/pathogen interaction of Fusarium oxysporum f. sp. lentis, and inheritance of resistance to lentil wilt in Syria. Ph.D. Thesis, Faculty of Agriculture, University of Aleppo, Syria.
2. Abd-Elsalam KA, Khalil MS, Aly AA, Asran-Amal A (2002). Genetic diversity among Fusarium oxysporum f. sp. vasinfectum isolates revealed by UP-PCR and AFLP markers. Phytopathol. Mediterr. 41:1-7.
3. Abdel-Satar MA, Khalil MS, Mohmed IN, Abdel-Salam KA, and Verreet JA (2003). Molecular phylogeny of Fusarium species by AFLP fingerprint. Afr. J. Biotechnol. 2: 51-55.
4. Assigbetse KB, Fernandez D, Dubois MP, Geiger JP (1994). Differentiation of Fusarium oxysporum f. sp. vasinfectum races on cotton by random amplified polymorphic DNA (RAPD) analysis. Phytopathology 84: 622- 626.
5. Bassam BJ, Caetano-Anolles G, Gresshoff PM 1991. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal. Biochim. 196: 80-83.
6. Bayaa B, Erskine W, Abbas A (1994). Evaluating different methods for screening lentil germplasm for resistance to lentil wilt caused by Fusarium oxysporum f. sp. lentis. Arab. J. Plant Protection 12: 83-91.
7. Bayaa B, Erskine W, Hamdi A (1995). Evaluation of a wild lentil collection for resistance to vascular wilt. Genet. Resour. Crop Evol. 42: 231-235.
8. Bayaa B, Erskine W, Singh M (1997). Screening lentil for resistance to Fusarium wilt: Methodology and source of resistance. Euphytica 98: 69-74.
9. Belabid L, Fortas Z, Dalli D, Khiare M, Amdjad D (2000). Importance du flétrissement et de la pourriture racinaire de la lentille dans le nord ouest Algérien. Cahiers Agricultures 9: 515-518.
10. Belabid L, Fortas Z (2002). Virulence and vegetative compatibility of Algerian isolates of Fusarium oxysporum f. sp. lentis. Phytopathol. Mediterr. 41: 179-187.
11. Bentley S, Pegg KG, Dale JL (1995). Genetic variation among a world wide collection of isolates of Fusarium oxysporum f. sp. cubense analyzed by RAPD-PCR fingerprinting. Mycol. Res. 99: 1378-1384.
12. Bhalla MK, Nozzolillo C, Schneider E (1992). Observation on the responses of lentil root cells to hypha of Fusarium oxysporum. J. Phytopathol 135: 335-341.
13. Bohn M, Utz HF, Melchinger AE (1999). Genetic similarities among winter wheat cultivars determined on the basis of RFLPs, AFLPs, and SSRs and their use for predicting progeny variance. Crop Sci. 39: 228-237.
14. eme Eds, Gembloux (Belgique). 463 pp.
15. Erskine W, Bayaa B (1996). Yield loss, incidence and inoculum density associated with vascular wilt of lentil. Phytopathol. Mediterr. 36: 24-32.
16. Hadrys H, Balick M, Schierwater B (1992). Application of random amplified polymorphic DNA (RAPD) in molecular ecology. Mol. Ecol. 1: 55-63.
17. Hall BG (1990). Spontaneous point mutations that occur more often when advantageous than when neutral. Genetics 126: 5-16.
18. Jiménez-Gasco M, Pérez-Artés W, Jiménez-Diaz RM (2001). Identification of pathogenic races 0, 1B/C, 5, and 6 of Fusarium oxysporum f. sp. ciceris with random amplified polymorphic DNA (RAPD). Eur J. Plant Pathol. 107 (2): 237-248.
19. Kema GHJ, Goodwin SB, Hamza S, Verstappen ECP, Cavaletto JR, Van der lee TAJ, De Weerdt M, Bonants PJM, Waalwijk C (2002). A combined amplified fragment length polymorphism and randomly amplified polymorphism DNA genetic linkage map of Mycosphaerella graminicola, in Septoria tritici leaf blotch pathogen of wheat. Genetics 161: 1497-1505.
20. Kiprop EK, Baudoin JP, Mwang'ombe AW, Kimani PM, Mergeai G, Maquet A (2002). Characterization of Kenyan isolates of Fusarium udum from Pigeonpea [Cajanus cajan (L.) Millsp.] by cultural characteristics, aggressiveness and AFLP analysis J. Phytopathol.150: 517-527.
21. Namiki F, Shiomi T, Nishi K, Kayamura T, Tsuge T (1998). Pathogenic and genetic variation in the Japanese strains of Fusarium oxysporum f. sp. melonis. Phytopathology 88: 804-810.
22. Nelson AJ, Elias KS, Arévalo GE, Darlington LC, Bailey BA (1997). Genetic characterization by RAPD analysis of isolates of Fusarium oxysporum f. sp. erythroxyli associated with an emerging epidemic in Peru. Phytopathology 87: 1220-1225.
23. Nelson PE, Toussoun TA, Marasas WFO (1983). Fusarium species: An illustrated manual for identification. The Pennsylvania State University Press, University Park. 193 pp.
24. O'Neill NR, Berkum van P, Lin J J, Ude GN, Kenworthy W, Saunder JA (1997). Application of restriction fragment length polymorphism for genetic characterization of Colletotrichum pathogens of alfalfa. Phytopathology 87: 745-750.
25. Pejic I, Ajmonemarsan P, Morgante M, Kozumplick V, Castiglioni P, Taramino G, Motto M (1998). Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs, and AFLPs. Theor. Appl. Genet. 97: 1248-55.
26. Pomazi A, Wittner A, Pesti M, Hornok L (1994). A PCR-generated simple RFLP-probe differentiates three distinct groups within Fusarium oxysporum f. sp. pisi. Acta Phytopathol. Entomol. Hung. 29: 203-213.
27. Pongam P, Osborn TC, Williams PH (1999). Assessment of genetic variation among Leptosphaeria maculans isolates using pathogenecity data and AFLP analysis. Plant Dis. 83: 149-154.
28. Rohlf FJ (1993). Numerical taxonomy and multivariate analysis system. Version 1.80, Exeter software. Setauket. New York, USA.
29. Saghai Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984). Ribosomal DNA spacer-length polymorphism in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. USA 81: 8014-8018.
30. Schnieder F, Koch G, Jung C, Verreet JA (1998). The application of molecular markers for genetic characterization of Septoria tritici population. J. Plant Dis. and Prot 105 (5): 452-461.
31. rd European Conference on Grain Legumes, 14-19 November, Valladolid, Spain, AEP (Eds), 254 p.
32. Sneath PHA, Sokal RR (1973). Numerical taxonomy: The principles and practice of numerical classification. W.H. Freeman and Company. San Francisco. 573 pp.
33. Vos P, Hogers R, Bleeker M, Reijans M, Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995). AFLP: a new technique for DNA fingerprinting. Nucleic. Acids Res. 23: 4407-4414.
34. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990). DNA polymorphism amplified by arbitrary primers as useful genetic markers. Nucleic Acids Res. 18: 6531-6535.
35. Woo SL, Zoina A, Del-Sorbo G, Lorito M, Nanni B, Scala F, Noviello C (1996). Characterization of Fusarium oxysporum f. sp. phaseoli by pathogenic races, VCGs, RFLPs, and RAPD. Phytopathology 86: 966-973.