CoC: A database of universally conserved residues in protein folds

Bioinformatics

Volumn 21, Issue 10, 2005, Pages 2539-2540

  Donald, Jason E ^a   Hubner, Isaac A ^a   Rotemberg, Veronica M ^a   Shakhnovich, Eugene I ^a   Mirny, Leonid A ^b  

^a HARVARD UNIVERSITY   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONSERVATISM OF CONSERVATISM; DATA ANALYSIS; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN FAMILY; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN STABILITY; STATISTICAL ANALYSIS;

EID: 19544385993     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti360     Document Type: Article

References (10)

1. Berman,H.M. et al. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
2. Fersht,A.R. (2000) Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism. Proc. Natl Acad. Sci. USA, 97, 1525-1529.
3. Holm,L. and Sander,C. (1996) Mapping the protein universe. Science, 273, 595-603.
4. Lopez-Hernandez,E. and Serrano,L. (1996) Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2. Fold. Des., 1, 43-55.
5. Merritt,E.A. and Bacon,D.J. (1997) Raster3D: photorealistic molecular graphics. Meth. Enzymol., 277, 505-524.
6. Mirny,L.A. and Shakhnovich,E.I. (1999) Universally conserved positions in protein folds; reading evolutionary, folding kinetics and function. J. Mol. Biol., 291, 177-196.
7. Mirny,L. and Shakhnovich,E. (2001a) Protein folding theory: from lattice to all-atom models. Annu. Rev. Biophys. Biomol. Struct., 30, 361-396.
8. Mirny,L. and Shakhnovich,E. (2001b) Evolutionary conservation of the folding nucleus. J. Mol. Biol., 308, 123-129.
9. Murray-Rust,P. et al. (2004) Chemical markup, XML, and the World Wide Web 5. Applications of chemical metadata in RSS aggregators. J. Chem. Inf. Comput. Sci., 44, 462-469.
10. Sander,C. and Schneider,R. (1991) Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins, 9, 56-68.