Synthesis and physicochemical properties of peptides in soil humic substances

Journal of Peptide Research

Volumn 63, Issue 3, 2004, Pages 253-264

  Fan, T W M ^a,b   Lane, A N ^b   Chekmenev, E ^b   Wittebort, R J ^b   Higashi, R M ^c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF LOUISVILLE   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

2 D nuclear magnetic resonance; 13C and 15N labeling; Circular dichroism; Humified peptides; Pyrolysis gas chromatography mass spectrometry

Indexed keywords

GLUCOSE; NITRATE; PEPTIDE; PROTEIN HYDROLYSATE; CARBON; NITROGEN;

ARTICLE; CIRCULAR DICHROISM; GAS CHROMATOGRAPHY; HUMIC SUBSTANCE; HUMIDIFIER; MASS SPECTROMETRY; MOLECULAR INTERACTION; NUCLEAR MAGNETIC RESONANCE; PEPTIDE ANALYSIS; PEPTIDE SYNTHESIS; PHYSICAL CHEMISTRY; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN METABOLISM; PROTEIN STRUCTURE; SOLID STATE; STRUCTURE ANALYSIS; CHEMISTRY; MASS FRAGMENTOGRAPHY; METABOLISM; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; SOIL; SYNTHESIS;

CARBON ISOTOPES; CIRCULAR DICHROISM; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; MAGNETIC RESONANCE SPECTROSCOPY; NITROGEN ISOTOPES; PEPTIDES; SOIL;

EID: 1942470061     PISSN: 1397002X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1399-3011.2004.00142.x     Document Type: Article

References (32)

1. Malcolm, R.L. (1990) Variations between humic substances isolated from soils, stream waters, and groundwaters as revealed by 13C-NMR spectroscopy. In: Humic Substances in Soil and Crop Sciences: Selected Readings: Proceedings of a Symposium Cosponsored by the International Humic Substances Society, Chicago, Illinois, 2 December 1985 (MacCarthy, P., Clapp, C.E., Malcolm, R.L. & Bloom, P.R., eds), pp. 13-35. American Society of Agronomy: Soil Science Society of America, Madison, WI, USA.
2. MacCarthy, P., Bloom, P.R., Clapp, C.E. & Malcolm, R.L. (1990) Humic substances in soil and crop sciences: An overview. In: Humic Substances in Soil and Crop Sciences: Selected Readings: Proceedings of a Symposium Cosponsored by the International Humic Substances Society, Chicago, Illinois, 2 December 1985 (MacCarthy, P., Clapp, C.E., Malcolm, R.L. & Bloom, P.R., eds), pp. 261-271. American Society of Agronomy: Soil Science Society of America, Madison, WI, USA.
3. Hayes, M.H.B. & Malcolm, R.L. (2001) Considerations of compositions and of aspects of the structures of humic substances. In: Humic Substances and Chemical Contaminants (Clapp, C.E., Hayes, M.H.B., Senesi, N., Bloom, P.R. & Jardine, P.M., eds), pp. 3-39. Soil Science Society of America, Inc., Madison, WI, USA.
4. Knicker, H. & Hatcher, P.G. (1997) Survival of protein in an organic-rich sediment: possible protection by encapsulation in organic matter. Naturwissenschaften 84, 231-234.
5. Lu, X.Q., Hanna, J.V. & Johnson, W.D. (2000) Source indicators of humic substances: an elemental composition, solid state C-13 CP/MAS NMR and Py-GC/MS study. Appl. Geochem. 15, 1019-1033.
6. Stevenson, F.J. (1985) Trace metal-organic matter interaction in geologic environments. In: Significance of Trace Metal Elements in Solving Petrogenetic Problems (Theophrastus, S.A., ed.), National Technical University, Athens.
7. Schnitzer, M. (1995) Organic-inorganic interactions in soils and their effects on soil quality. In: Environmental Impact of Soil Component Interactions. Natural and Anthropogenic Organics, volume 2 (Huang, P.M., Berthelin, J., Bollag, J.-M., McGill, W.B. & Page, A.L., eds), pp. 3-19. Lewis Publishers, Boca Raton.
8. Fan, T.W.-M., Higashi, R.M. & Lane, A.N. (2000) Chemical characterization of a chelator-treated soil humate by solution-state multinuclear two-dimensional NMR with FTIR and pyrolysis-GCMS. Environ. Sci. Technol. 34, 1636-1646.
9. Rebhun, M., Meir, S. & Laor, Y. (1998) Using dissolved humic acid to remove hydrophobic contaminants from water by complexation-flocculation process. Environ. Sci. Technol 32, 981-986.
10. Kacker, T., Haupt, E.T.K., Garms, C., Francke, W. & Steinhart, H. (2002) Structural characterisation of humic acid-bound PAH residues in soil by C-13-CPMAS-NMR-spectroscopy: evidence of covalent bonds. Chemosphere 48, 117-131.
11. Perminova, I.V., Grechishcheva, N.Y., Kovalevskii, D.V., Kudryavtsev, A.V., Petrosyan, V.S. & Matorin, D.N. (2001) Quantification and prediction of the detoxifying properties of humic substances related to their chemical binding to polycyclic aromatic hydrocarbons. Environ. Sci. Technol 35, 3841-3848.
12. Dec, J. (1997) Use of a silylation procedure and 13C-NMR spectroscopy to characterize bound and sequestered residues of cyprodinil in soil. Environ. Sci. Technol 31, 2991-2997.
13. Chiou, C.T. (1990) Roles of organic matter, minerals, and moisture in sorption of nonionic compounds and pesticides by soil. In: Humic Substances in Soil and Crop Sciences: Selected Readings: Proceedings of a Symposium Cosponsored by the International Humic Substances Society, Chicago, Illinois, 2 December 1985 (MacCarthy, P., Clapp, C.E., Malcolm, R.L. & Bloom, P.R., eds), pp. 111-160. American Society of Agronomy: Soil Science Society of America, Madison, WI, USA.
14. Preston, C.M. (1996) Applications of NMR to soil organic matter analysis: history and prospects. Soil Science 161, 144-166.
15. Zang, X., van Heemst, J.D.H., Dria, K.J. & Hatcher, P.G. (2000) Encapsulation of protein in humic acid from a histosol as an explanation for the occurrence of organic nitrogen in soil and sediment. Organic Geochem. 31, 679-695.
16. Zang, X. & Hatcher, P.G. (2002) A Py -GC -MS and NMR spectroscopy study of organic nitrogen in Mangrove Lake sediments. Organic Geochem. 33, 201-211.
17. Bundy, L.G. & Meisinger, J.J. (1994) Nitrogen availability indices. In: Methods of Soil Analysis, Soil Science Society of America Book Series; no. 5 (Weaver, R.W., ed.), pp. 951-984. Soil Science Society of America, Madison, WI, USA.
18. Piotto, M., Saudek, V. & Sklenar, V. (1992) Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions. J. Biomolec. NMR. 2, 661-665.
19. Zhang, Q.W., Zhang, H., Lakshmi, K.V., Lee, D.K., Bradley, C.H. & Wittebort, R.J. (1998) Double and triple resonance circuits for high-frequency probes. J. Magn. Reson. 132, 167-171.
20. Bennett, A.E., Rienstra, C.M., Auger, M., Lakshmi, K.V. & Griffin, R.G. (1995) Heteronuclear decoupling in rotating solids. J. Chem. Phys. 103, 6951-6958.
21. Antzutkin, O.N., Shakar, S.C. & Levitt, M.H. (1995) 2-Dimensional side-band separation in magic-angle-spinning NMR. J. Magn. Reson Series A. 115, 7-19.
22. Herzfeld, J. & Berger, A.E. (1980) Sideband intensities in NMR-spectra of samples spinning at the magic angle. J. Chem. Phys. 73, 6021-6030.
23. Chekmenev, E.Y., Xu, R.Z., Mashuta, M.S. & Wittebort, R.J. (2002) Glycyl C alpha chemical shielding in tripeptides: measurement by solid-state NMR and correlation with X-ray structure and theory. J. Am. Chem. Soc. 124, 11894-11899.
24. Woody, R.W. (1995) Circular-dichroism. Methods Enzymol. 246, 34-71.
25. Buck, M. (1998) Trifluoroethanol and colleagues: cosolvents come of age. Recent studies with peptides and proteins. Q. Rev. Biophys. 31, 297-355.
26. 15N random coil NMR chemical shifts of the common amino acids: I. Investigations of nearest-neighbor effects. J. Biomolec. NMR. 5, 67-81.
27. Simpson, A.J., Burdon, J., Graham, C.L., Hayes, M.H.B., Spencer, N. & Kingery, W.L. (2001) Interpretation of heteronuclear and multidimensional NMR spectroscopy of humic substances. Eur. J. Soil Sci. 52, 495-509.
28. Pines, A., Gibby, M.G. & Waugh, J.S. (1972) Proton-enhanced NMR of dilute spins in solids. J. Chem. Phys. 59, 569-590.
29. Pines, A., Waugh, J.S. & Gibby, M.G. (1972) Proton-enhanced nuclear induction spectroscopy C-13 chemical shielding anisotropy in some organic solids. Chem. Phys. Lett. 15, 373.
30. Nieto P., Birdsall, B., Morgan W.D., Frenkiel T., Gargaro, A.R. & Feeney, J. (1997) Correlated bond rotations in interactions of arginine residues with ligand carboxylate groups in protein ligand complexes. FEBS Lett. 405, 16-20.
31. Fan, T.W.-M. (1996) Metabolite profiling by one- and two-dimensional NMR analysis of complex mixtures. Prog. NMR Spectrosc. 28, 161-219.
32. Fan, T.W.-M. (1996) Recent advancement in profiling plant metabolites by multi-nuclear and multi-dimensional NMR. In: Nuclear Magnetic Resonance in Plant Biology (Shachar-Hill, Y. & Pfeffer, P.E., eds), pp. 181-254. American Society of Plant Physiologists, Rockville, MD, USA.