Selective transcription and post-transcriptional processing of the heteroplasmic mitochondrial orf156 copies in the nucleus-cytoplasm hybrids of wheat

Plant Molecular Biology

Volumn 53, Issue 5, 2003, Pages 609-619

  Kitagawa, Kazuaki ^a   Takumi, Shigeo ^a   Nakamura, Chiharu ^a  

^a KOBE UNIVERSITY   (Japan)

Author keywords

Mitochondrial DNA heteroplasmy; Nucleus cytoplasm hybrid; orf156 (atp8); Post transcriptional processing; Selective transcription; Wheat

Indexed keywords

CROPS; GENES; PLANTS (BOTANY); RNA; TISSUE;

NUCLEUS-CYTOPLASM (NC); PLASMONS; REVERSE TRANSCRIPTION; TRANSCRIPTS;

MOLECULAR BIOLOGY;

MITOCHONDRIAL PROTEIN; RNA PRECURSOR; VEGETABLE PROTEIN;

ARTICLE; BIOLOGICAL MODEL; CELL NUCLEUS; CYTOPLASM; DNA FLANKING REGION; GENE DOSAGE; GENETIC TRANSCRIPTION; GENETICS; HYBRIDIZATION; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; RNA PROCESSING; SEQUENCE HOMOLOGY; WHEAT;

5' FLANKING REGION; BASE SEQUENCE; CELL NUCLEUS; CYTOPLASM; GENE DOSAGE; HYBRIDIZATION, GENETIC; MITOCHONDRIAL PROTEINS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; RNA PRECURSORS; RNA PROCESSING, POST-TRANSCRIPTIONAL; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSCRIPTION, GENETIC; TRITICUM;

AEGILOPS; AEGILOPS TAUSCHII; TRITICUM AESTIVUM;

EID: 1942442462     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:PLAN.0000019075.31353.77     Document Type: Article

References (42)

1. Arrieta-Montiel, M., Lyznik, A., Woloszynska, M., Janska, H., Tohme, J. and Mackenzie, S. 2001. Tracing evolutionary and developmental implications of mitochondrial stoichiometric shifting in the common bean. Genetics 158: 851-864.
2. Asakura, N., Nakamura, C. and Ohtsuka, I. 1997. RAPD markers linked to the nuclear gene from Triticum timopheevi that confers compatibility with Aegilops squarrosa cytoplasm on alloplasmic durum wheat. Genome 40: 201-210.
3. Asakura, N., Nakamura, C. and Ohtsuka, I. 2000. Homoeoallelic gene Ncc-tmp of Triticum timopheevii conferring compatibility with the cytoplasm of in the tetraploid wheat nuclear background. Genome 43: 503-511.
4. Bentolila, S., Alfonso, A.A. and Hanson, M.R. 2002. A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants. Proc. Natl. Acad. Sci. USA 99: 10887-10892.
5. Chesser, R.K. 1998. Heteroplasmy and organellar gene dynamics. Genetics 150: 1309-1327.
6. Chinnery, P.F., Thorburn, D.R., Samuels, D.C., White, S.L., Dahl, H.M., Turnbull, D.M., Lightowlers, R.N. and Howell, N. 2000. The inheritance of mitochondrial DNA heteroplasmy: random drift, selection or both? Trends Genet 16: 500-505.
7. Cooper, P., Butler, E. and Newton, K.J. 1990. Identification of a maize nuclear gene which influences the size and number of cox2 transcripts in mitochondria of perennial teosintes. Genetics 126: 461-467.
8. Gagliardi, D. and Leaver, C.J. 1999. Polyadenylation accelerates the degradation of the mitochondrial mRNA associated with cytoplasmic male sterility in sunflower. EMBO J. 18: 3757-3766.
9. Gagliardi, D., Perrin, R., Marechal-Drouard, L., Grienenberger, J.M. and Leaver, C.J. 2001. Plant mitochondrial polyadenylated mRNAs are degraded by a 3′-to 5′-exoribonuclease activity, which proceeds unimpeded by stable secondary structures. J. Biol. Chem. 276: 43541-43547.
10. Giege, P., Hoffmann, M., Binder, S. and Brennicke, A. 2000. RNA degradation buffers asymmetries of transcription in Arabidopsis mitochondria. EMBO Rep. 1: 164-170.
11. Gualberto, J.M., Bonnard, G., Lamattina, L. and Grienenburger, J.M. 1991. Expression of the wheat mitochondrial nad3-rps12 transcription unit: correlation between editing and mRNA maturation. Plant Cell 3: 1109-1120.
12. Hattori, N., Kitagawa, K., Takumi, S. and Nakamura, C. 2002. Mitochondrial DNA heteroplasmy in wheat, Aegilops and their nucleus-cytoplasm hybrids. Genetics 160: 1619-1630.
13. Hedtke, N., Borner, T. and Weihe, A. 1997. Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis. Science 277: 809-811.
14. Hedtke, B., Borner, T. and Weihe, A. 2000. One RNA polymerase serving two genomes. EMBO Rep 1: 435-440.
15. Hirose, T. and Sugiura, M. 2001. Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: development of a chloroplast in vitro RNA editing system. EMBO J. 20: 1144-1152.
16. Hoffmann, M., Kuhn, J., Daschner, K. and Binder, S. 2001. The RNA world of plant mitochondria. Progr. Nucl. Acids Res. Mol. Biol. 70: 119-154.
17. Ikeda, T.M. and Gray, M.W. 1999. Identification and characterization of T3/T7 bacteriophage-like RNA polymerase sequences in wheat. Plant Mol. Biol. 40: 567-578.
18. Iwabuchi, M., Kyozuka, J. and Shimamoto, K. 1993. Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice. EMBO J. 12: 1437-1446.
19. Janska, H., Sarria, R., Woloszynska, M., Arrieta-Montiel, M. and Mackenzie, S.A. 1998. Stoichiometric shifts in the common bean mitochondrial genome leading to male sterility and spontaneous reversion to fertility. Plant Cell 10: 1163-1180.
20. Kennell, J.C. and Pring, D.R. 1989. Initiation and processing of atp6, T-urf13 and orf221 transcripts from mitochondria of T cytoplasm maize. Mol. Gen. Genet. 216: 16-24.
21. Kitagawa, K., Takumi, S. and Nakamura, C. 2002. Evidence of paternal transmission of mitochondrial DNA in a nucleus-cytoplasm hybrid of timopheevi wheat. Genes Genet. Syst. 77: 243-250.
22. Kubo, T., Nishizawa, S., Sugawara, A., Itchoda, N., Estiati, A. and Mikami, T. 2000. The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA). Nucl. Acids Res. 28: 2571-2576.
23. Kuhn, J., Tengler, U. and Binder, S. 2001. Transcript lifetime is balanced between stabilizing stem-loop structures and degradation-promoting polyadenylation in plant mitochondria. Mol. Cell Biol. 21: 731-742.
24. Laser, B. and Kück, U. 1995. The mitochondrial atpA/atp9 cotranscript in wheat and triticale: RNA processing depends on the nuclear genotype. Curr. Genet. 29: 50-57.
25. Laser, B., Mohr, S. Odenbach, W., Oettler, G. and Kück, U. 1997. Paternal and novel copies of the mitochondrial orf25 gene in the hybrid crop-plant triticale: predominant trancriptional expression of the maternal gene copy. Curr. Genet. 32: 337-347.
26. Lu, B. and Hanson, M.R. 1992. A single nuclear gene specifies the abundance and extent of RNA editing of a plant mitochondrial transcript. Nucl. Acids Res. 20: 5699-5703.
27. Mackenzie, S. and Chase, C. 1990. Fertility restoration is associated with loss of a portion of the mitochondrial genome in cytoplasmic male-sterile common bean. Plant Cell 2: 905-912.
28. Martinez-Zapater, J.M., Gil, P., Capel, J. and Somerville, C.R. 1992. Mutations at the Arabidopsis CHM locus promote rearrangements of the mitochondrial genome. Plant Cell 4: 889-899.
29. Manfredi, G., Fu, J., Ojaimi, J., Sadlock, J.E., Kwong, J.Q., Guy, J. and Schon, E.A. 2002. Rescue of a deficiency in ATP synthesis by transfer of MTATP6, a mitohondrial DNA-encoded gene, to the nucleus. Nature Genet. 30: 394-399.
30. McFarland, R., Clark, K.M., Morris, A.A., Taylor, R.W., Macphail, S., Lightowlers, R.N. and Turnbull, D.M. 2002. Multiple neonatal deaths due to a homoplasmic mitochondrial DNA mutation. Nature Genet. 30: 145-146.
31. Newton, K.J. and Cor, E.H. 1986. Mitochondrial DNA changes in abnormal growth mutants of maize. Proc. Natl. Acad. Sci. USA 83: 7363-7366.
32. Newton, K.J., Knudsen, C., Gabay-Laughnan, S. and Laughnan, J.R. 1990. An abnormal growth mutant in maize has a defective mitochondrial cytochrome oxidase gene. Plant Cell 2: 107-113.
33. Ogihara, Y., Kurihara, Y., Futami, K., Tsuji, K. and Murai, K. 1999. Photoperiod-sensitive cytoplasmic male sterility in wheat: nuclear-mitochondrial incompatibility results in differential processing of the mitochondrial orf25 gene. Curr. Genet. 36: 354-362.
34. Ohtsuka, I. 1991. Genetic differentiation in wheat nuclear genomes in relation to compatibility with Aegilops squarrosa cytoplasm and application to phylogeny of polyploid wheat. J. Fac. Agric. Hokkaido Univ. 65 (part 2): 127-198.
35. Pruitt, K.D. and Hanson, M.R. 1991. Transcription of the Petunia mitochondrial CMS-associated Pcf locus in male-sterile and fertility restored lines. Mol. Gen. Genet. 227: 348-355.
36. Rocheford, T.R., Kennell, J.C. and Pring, D.R. 1992. Genetic analysis of nuclear control of T-urf13/orf221 transcription in T cytoplasm maize. Theor. Appl. Genet. 84: 891-898.
37. Sakamoto, W., Kondo, H., Murata, M. and Motoyoshi, F. 1996. Altered mitochondrial gene expression in a maternal distorted leaf mutant of Arabidopsis induced by chloroplast mutator. Plant Cell 8: 1377-1390.
38. Singh, M. and Brown, G.G. 1991. Suppression of cytoplasmic sterility by nuclear gene alters expression of a novel mitochondrial gene region. Plant Cell 3: 1349-1362.
39. Singh, M. and Brown, G.G. 1993. Characterization of expression of a mitochondrial gene region associated with the Brassica 'Polima' CMS: developmental influences. Curr. Genet. 24: 316-322.
40. Tsuji, S. and Murata, M. 1976. Specific interaqction between the D genome and the three alien cytoplasms in wheat. II. Seed inviability induced by the alien cytoplasms. Jpn. J. Genet. 51: 327-336.
41. Tsukamoto, N., Asakura, N., Hattori, N., Takumi, S., Mori, N. and Nakamura, C. 2000. Identification of paternal mitochondrial DNA sequences in the nucleus-cytoplasm hybrids of tetraploid and hexaploid wheat with D and D2 plasmons from Aegilops species. Curr. Genet. 38: 208-217.
42. Tsunewaki, K. 1996. Plasmon analysis as the counterpart of genome analysis. In: P.P. Jauhar (Ed.) Methods of Genome Analysis in Plants, CRC Press, Boca Raton, FL, pp. 271-299.