메뉴 건너뛰기




Volumn 223, Issue 2, 2003, Pages 161-169

Vector space classification of DNA sequences

Author keywords

Clustering; Document vector; Gene structure; Genomics; Intron exon identification; Principal component analysis

Indexed keywords

GENOMIC DNA;

EID: 19244371031     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-5193(03)00082-1     Document Type: Article
Times cited : (18)

References (26)
  • 1
    • 0034708480 scopus 로고    scopus 로고
    • The genome sequence of Drosophila melanogaster
    • Adams M.D.et al. The genome sequence of Drosophila melanogaster. Science. 287:2000;2185-2195.
    • (2000) Science , vol.287 , pp. 2185-2195
    • Adams, M.D.1
  • 3
    • 0032544103 scopus 로고    scopus 로고
    • Self-identification of protein-coding regions in microbial genomes
    • Audic S., Claverie J.M. Self-identification of protein-coding regions in microbial genomes. Proc. Natl Acad. Sci. USA. 95(17):1998;10026-10031.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , Issue.17 , pp. 10026-10031
    • Audic, S.1    Claverie, J.M.2
  • 4
    • 2742544378 scopus 로고    scopus 로고
    • Application of vector space techniques to DNA
    • Biro T., Czirok A., Vicsek T., Major A. Application of vector space techniques to DNA. Fractals. 6(3):1998;205-210.
    • (1998) Fractals , vol.6 , Issue.3 , pp. 205-210
    • Biro, T.1    Czirok, A.2    Vicsek, T.3    Major, A.4
  • 5
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge C., Karlin S. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268:1997;78-94.
    • (1997) J. Mol. Biol. , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 6
    • 0032104509 scopus 로고    scopus 로고
    • Finding the genes in genomic DNA
    • Burge C., Karlin S. Finding the genes in genomic DNA. Curr. Opin. Struct. Biol. 8(3):1998;346-354.
    • (1998) Curr. Opin. Struct. Biol. , vol.8 , Issue.3 , pp. 346-354
    • Burge, C.1    Karlin, S.2
  • 7
    • 0030585734 scopus 로고    scopus 로고
    • Evaluation of gene structure prediction programs
    • Burset M., Guigo R. Evaluation of gene structure prediction programs. Genomics. 34(3):1996;353-367.
    • (1996) Genomics , vol.34 , Issue.3 , pp. 353-367
    • Burset, M.1    Guigo, R.2
  • 8
    • 0030768930 scopus 로고    scopus 로고
    • Computational methods for the identification of genes in vertebrate genomic sequences
    • Claverie J.M. Computational methods for the identification of genes in vertebrate genomic sequences. Hum. Mol. Genet. 6(10):1997;1735-1744.
    • (1997) Hum. Mol. Genet. , vol.6 , Issue.10 , pp. 1735-1744
    • Claverie, J.M.1
  • 9
    • 0029937428 scopus 로고    scopus 로고
    • Hidden Markov models
    • Eddy S.R. Hidden Markov models. Curr. Opin. Struct. Biol. 6(3):1996;361-365.
    • (1996) Curr. Opin. Struct. Biol. , vol.6 , Issue.3 , pp. 361-365
    • Eddy, S.R.1
  • 10
    • 0030218799 scopus 로고    scopus 로고
    • Finding genes by computer: The state of the art
    • Fickett J.W. Finding genes by computer. the state of the art Trends Genet. 12(8):1996;316-320.
    • (1996) Trends Genet. , vol.12 , Issue.8 , pp. 316-320
    • Fickett, J.W.1
  • 11
    • 0000377189 scopus 로고    scopus 로고
    • The gene identification problem: An overview for developers
    • Fickett J.W. The gene identification problem. an overview for developers Comput. Chem. 20(1):1996;103-118.
    • (1996) Comput. Chem. , vol.20 , Issue.1 , pp. 103-118
    • Fickett, J.W.1
  • 12
    • 0027059264 scopus 로고
    • Assessment of protein coding measures
    • Fickett J.W., Tung C.-S. Assessment of protein coding measures. Nucleic Acids Res. 20(24):1992;6441-6450.
    • (1992) Nucleic Acids Res. , vol.20 , Issue.24 , pp. 6441-6450
    • Fickett, J.W.1    Tung, C.-S.2
  • 13
    • 0032390519 scopus 로고    scopus 로고
    • Computer analysis of DNA sequences
    • Gelfand M.S. Computer analysis of DNA sequences. Mol. Biol. 32(1):1998;88-104.
    • (1998) Mol. Biol. , vol.32 , Issue.1 , pp. 88-104
    • Gelfand, M.S.1
  • 14
    • 10244239321 scopus 로고    scopus 로고
    • Life with 6000 genes
    • Goffeau A.et al. Life with 6000 genes. Science. 274:1996;546-567.
    • (1996) Science , vol.274 , pp. 546-567
    • Goffeau, A.1
  • 15
    • 0031827381 scopus 로고    scopus 로고
    • Xlandscape: The graphical display of word frequencies in sequences
    • Levy S., Compagnoni L., Myers E.W., Stormo G.D. Xlandscape. the graphical display of word frequencies in sequences Bioinformatics. 14(1):1998;74-80.
    • (1998) Bioinformatics , vol.14 , Issue.1 , pp. 74-80
    • Levy, S.1    Compagnoni, L.2    Myers, E.W.3    Stormo, G.D.4
  • 17
    • 0036796369 scopus 로고    scopus 로고
    • Current methods of gene prediction, their strength and weaknesses
    • Mathé C., Sagot M.-F., Schiex T., Rouzé P. Current methods of gene prediction, their strength and weaknesses. Nucleic Acids Res. 30(19):2002;4103-4117.
    • (2002) Nucleic Acids Res. , vol.30 , Issue.19 , pp. 4103-4117
    • Mathé, C.1    Sagot, M.-F.2    Schiex, T.3    Rouzé, P.4
  • 18
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman S.B., Wunsch C.D. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48:1970;443-453.
    • (1970) J. Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 19
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson W.R., Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA. 85(8):1988;2444-2448.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , Issue.8 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 20
    • 0033977982 scopus 로고    scopus 로고
    • EID: The exon-intron database - An exhaustive database of protein coding intron-containing genes
    • Saxonov S., Daizadeh I., Fedorov A., Gilbert W. EID. the exon-intron database - an exhaustive database of protein coding intron-containing genes Nucleic Acids Res. 28(1):2000;185-190.
    • (2000) Nucleic Acids Res. , vol.28 , Issue.1 , pp. 185-190
    • Saxonov, S.1    Daizadeh, I.2    Fedorov, A.3    Gilbert, W.4
  • 21
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith T.F., Waterman M.S. Identification of common molecular subsequences. J. Mol. Biol. 147:1981;195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 22
    • 0028965444 scopus 로고
    • Identification of protein coding regions in genomic DNA
    • Snyder E.E., Stormo G.D. Identification of protein coding regions in genomic DNA. J. Mol. Biol. 248:1995;1-18.
    • (1995) J. Mol. Biol. , vol.248 , pp. 1-18
    • Snyder, E.E.1    Stormo, G.D.2
  • 23
    • 0032509302 scopus 로고    scopus 로고
    • Genome sequence of the nematode C. elegans: A platform for investigating biology
    • The C. elegans Sequencing Consortium, 1998. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282, 2012-2018.
    • (1998) Science , vol.282 , pp. 2012-2018
  • 24
    • 0025826412 scopus 로고
    • A new family of powerful multivariate statistical sequence analysis techniques
    • van Heel M. A new family of powerful multivariate statistical sequence analysis techniques. J. Mol. Biol. 220(4):1991;877-887.
    • (1991) J. Mol. Biol. , vol.220 , Issue.4 , pp. 877-887
    • Van Heel, M.1
  • 25
    • 0030270953 scopus 로고    scopus 로고
    • GRAIL: A multi-agent neural network system for gene identification
    • Xu Y., Mural R.J., Einstein J.R., Shah M.B., Uberbacher E.C. GRAIL. a multi-agent neural network system for gene identification Proc. IEEE. 84(10):1996;1544-1552.
    • (1996) Proc. IEEE , vol.84 , Issue.10 , pp. 1544-1552
    • Xu, Y.1    Mural, R.J.2    Einstein, J.R.3    Shah, M.B.4    Uberbacher, E.C.5
  • 26
    • 0031027525 scopus 로고    scopus 로고
    • Identification of protein coding regions in the human genome by quadratic discriminant analysis
    • Zhang M.Q. Identification of protein coding regions in the human genome by quadratic discriminant analysis. Proc. Natl Acad. Sci. USA. 94(2):1997;565-568.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , Issue.2 , pp. 565-568
    • Zhang, M.Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.