Automated band mapping in electrophoretic gel images using background information

Nucleic Acids Research

Volumn 33, Issue 9, 2005, Pages 2806-2812

  Zerr, Troy ^a   Henikoff, Steven ^b  

^a Fred Hutchinson Cancer Research Center   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ALGORITHM; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; AUTOMATION; BASE MISPAIRING; CALIBRATION; COMPUTER PROGRAM; CONTROLLED STUDY; DNA FINGERPRINTING; DNA SEQUENCE; GEL ELECTROPHORESIS; GENETIC ANALYSIS; HIGH THROUGHPUT SCREENING; IMAGE ANALYSIS; MATHEMATICAL COMPUTING; MUTATIONAL ANALYSIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; ELECTROPHORESIS; IMAGE PROCESSING; METHODOLOGY; NUCLEOTIDE SEQUENCE; STANDARD;

ALGORITHMS; BASE PAIR MISMATCH; CALIBRATION; DNA FINGERPRINTING; DNA MUTATIONAL ANALYSIS; ELECTROPHORESIS; IMAGE PROCESSING, COMPUTER-ASSISTED; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 19144367197     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki580     Document Type: Article

References (14)

1. Elder, J.K., Green, D.K. and Southern, E.M. (1986) Automatic reading of DNA sequencing gel autoradiographs using a large format digital scanner. Nucleic Acids Res., 14, 417-424.
2. Sulston, J., Mallett. F., Durbin, R. and Horsnell, T. (1989) Image analysis of restriction enzyme fingerprint autoradiograms. Comput. Appl. Biosci., 5, 101-106.
3. Henikoff S. and Comai, L. (2003) Single-nucleotide mutations for plant functional genomics. Ann. Rev. Plant Biol., 54, 375-401.
4. Nagy, A., Perrimon, N., Sandmeyer,S. and Plasterk, R. (2003) Tailoring the genome: The power of genetic approaches. Nature Genetics, 33 (Suppl.), 276-284.
5. Nickerson, D.A., Kolker, N., Taylor. S.L. and Rieder, M.J. (2001) Sequence-based detection of single nucleotide polymorphism. Methods Mol. Biol., 175. 29-35.
6. Oleykowski, C.A., Bronson Mullins, C.R., Godwin. A.K. and Yeung. A.T. (1998) Mutation detection using a novel plant endonuclease. Nucleic Acids Res., 26, 4597-4602.
7. Colbert. T., Till, B.J., Tompa, R., Reynolds, S., Steine, M.N., Yeung. A.T., McCallum, C.M., Comai, L. and Henikoff, S. (2001) High-throughput screening for induced point mutations. Plant Physiol., 126, 480-484.
8. Middendorf, L.R., Bruce J.C., Bruce, R.C., Eckles, R.D., Grone, D.L., Roemer, S.C., Sloniker, G.D., Steffens. D.L., Sutter, S.L. and Brumbaugh, J.A. (1992) Continuous on-line DNA sequencing using a versatile infrared laser scanner/electrophoresis apparatus. Electrophoresis, 13, 487-494.
9. Till. B.J., Burtner, C., Comai. L. and Henikoff, S. (2004) Mismatch cleavage by single-strand specific nucleases. Nucleic Acids Res., 32, 2632-2641.
10. Greene, E.A., Codomo, C.A., Taylor, N.E., Henikoff, J.G., Till, B.J., Reynolds, S.H., Enns, L.C., Burtner, C., Johnson, J.E., Odden, A.R. et al. (2003) Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics, 164, 731-740.
11. Comai, L., Young, K., Till, B.J., Reynolds, S.H., Greene. E.A., Codomo, C.A., Enns, L.C., Johnson, J.E., Burtner, C., Odden. A.R. et al. (2004) Efficient discovery of DNA polymorphisms in natural populations by Ecotilling. Plant. J., 37, 778-786.
12. Sulston, J.. Mallet F., Staden. R., Durbin. R., Horsnell, T. and Coulson, A. (1988) Software for genome mapping by fingerprinting techniques. Comput. Appl. Biosci., 4, 125-132.
13. Vos, P., Hogers, R., Bleeker, M., Reijans, M., van de Lee, T., Hornes. M., Frijters, A., Pot. J., Peleman, J., Kuiper, M. et al. (1995) AFLP: A new technique for DNA fingerprinting. Nurleic Acids Res., 23, 4407-4414.
14. Cohen, J.C., Kiss, R.S., Pertsemlidis. A., Marcel. Y.L., McPherson, R. and Hobbs, H.H, (2004) Multiple rare alleles contribute to low Plasma levels of HDL cholesterol. Science, 305. 869-872.