-
1
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y., and Hochberg, Y. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Statist. Soc. Series B 57, 289-300.
-
(1995)
J. R. Statist. Soc. Series B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
3
-
-
0036489053
-
Bayesian smoothing and regression splines for measurement error problems
-
Berry, S.M., Carroll, R.J., and Ruppert, D. 2002. Bayesian smoothing and regression splines for measurement error problems. J. Am. Statist. Assoc. 97, 160-169.
-
(2002)
J. Am. Statist. Assoc.
, vol.97
, pp. 160-169
-
-
Berry, S.M.1
Carroll, R.J.2
Ruppert, D.3
-
4
-
-
0036401627
-
Bayesian hierarchical model for identifying changes in gene expression from microarray experiments
-
Broët, P., Richardson, S., and Radvanyi, F. 2002. Bayesian hierarchical model for identifying changes in gene expression from microarray experiments. J. Comp. Biol. 9, 671-683.
-
(2002)
J. Comp. Biol.
, vol.9
, pp. 671-683
-
-
Broët, P.1
Richardson, S.2
Radvanyi, F.3
-
5
-
-
0031246430
-
Ratio based decisions and the quantitative analysis of cDNA microarray images
-
Chen, Y., Dougherty, E.R., and Bittner, M.L. 1997. Ratio based decisions and the quantitative analysis of cDNA microarray images. J. Biomed. Optics 2, 364-374.
-
(1997)
J. Biomed. Optics
, vol.2
, pp. 364-374
-
-
Chen, Y.1
Dougherty, E.R.2
Bittner, M.L.3
-
6
-
-
84936916896
-
Robust locally weighted regression and smoothing scatterplots
-
Cleveland, W.S. 1979. Robust locally weighted regression and smoothing scatterplots. J. Am. Statist. Assoc. 74, 829-836.
-
(1979)
J. Am. Statist. Assoc.
, vol.74
, pp. 829-836
-
-
Cleveland, W.S.1
-
7
-
-
84947318637
-
Locally weighted regression: An approach to regression analysis by local fitting
-
Cleveland, W.S., and Devlin, S.J. 1988. Locally weighted regression: An approach to regression analysis by local fitting. J. Am. Statist. Assoc. 83, 596-610.
-
(1988)
J. Am. Statist. Assoc.
, vol.83
, pp. 596-610
-
-
Cleveland, W.S.1
Devlin, S.J.2
-
8
-
-
0036376993
-
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
-
Dudoit, S., Yang, Y.H., Callow, M.J., and Speed, T.P. 2002. Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica 12, 111-139.
-
(2002)
Statistica Sinica
, vol.12
, pp. 111-139
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.J.3
Speed, T.P.4
-
9
-
-
1542784653
-
Empirical Bayes analysis of a microarray experiment
-
Efron, B., Tibshirani, R., Storey, J.D., and Tusher, V. 2001. Empirical Bayes analysis of a microarray experiment. J. Am. Statist. Assoc. 96, 1151-1160.
-
(2001)
J. Am. Statist. Assoc.
, vol.96
, pp. 1151-1160
-
-
Efron, B.1
Tibshirani, R.2
Storey, J.D.3
Tusher, V.4
-
10
-
-
25444532788
-
Flexible smoothing with B-Splines and penalties
-
Eilers, P.H.C., and Marx, B.D. 1996. Flexible smoothing with B-Splines and penalties (with discussion). Statist. Sci. 11, 89-102.
-
(1996)
Statist. Sci.
, vol.11
, pp. 89-102
-
-
Eilers, P.H.C.1
Marx, B.D.2
-
11
-
-
0347263720
-
Iterative linear regression by sector
-
S.M. Lin and K.P. Johnson, eds. Papers from CAMDA 2000, Kluwer Academic, New York
-
Finkelstein, D.B., Gollub, J., Ewing, R., Sterky, F., Somerville, S., and Cherry, J.M. 2001. Iterative linear regression by sector, in S.M. Lin and K.P. Johnson, eds., Methods of Microarray Data Analysis. Papers from CAMDA 2000, 57-68, Kluwer Academic, New York.
-
(2001)
Methods of Microarray Data Analysis
, pp. 57-68
-
-
Finkelstein, D.B.1
Gollub, J.2
Ewing, R.3
Sterky, F.4
Somerville, S.5
Cherry, J.M.6
-
12
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
Friedman, N., Linial, M., Nachman, I., and Pe'er, D. 2000. Using Bayesian networks to analyze expression data. J. Comp. Biol. 7, 601-620.
-
(2000)
J. Comp. Biol.
, vol.7
, pp. 601-620
-
-
Friedman, N.1
Linial, M.2
Nachman, I.3
Pe'er, D.4
-
13
-
-
0030693871
-
Re-emergence of potato and tomato late blight in the United States
-
Fry, W.E., and Goodwin, S.B. 1997. Re-emergence of potato and tomato late blight in the United States. Plant Dis. 81, 1349-1357.
-
(1997)
Plant Dis.
, vol.81
, pp. 1349-1357
-
-
Fry, W.E.1
Goodwin, S.B.2
-
14
-
-
0038312668
-
Adaptive rejection metropolis sampling within Gibbs sampling
-
Gilks, W.R., Best, N.G., and Tan, K.K.C. 1995. Adaptive rejection metropolis sampling within Gibbs sampling. Appl. Statist. 44, 455-472.
-
(1995)
Appl. Statist.
, vol.44
, pp. 455-472
-
-
Gilks, W.R.1
Best, N.G.2
Tan, K.K.C.3
-
15
-
-
0003867639
-
-
Santa Fe Institute Working Paper, Santa Fe, New Mexico
-
Kepler, T.B., Crosby, L., and Morgan, K.T. 2000. Normalization and analysis of DNA microarray data by self-consistency and local regression. Santa Fe Institute Working Paper, Santa Fe, New Mexico.
-
(2000)
Normalization and Analysis of DNA Microarray Data by Self-Consistency and Local Regression
-
-
Kepler, T.B.1
Crosby, L.2
Morgan, K.T.3
-
16
-
-
0000884487
-
Experimental design for gene expression microarrays
-
Kerr, M.K., and Churchill, G.A. 2001a. Experimental design for gene expression microarrays. Biostatistics 2, 183-201.
-
(2001)
Biostatistics
, vol.2
, pp. 183-201
-
-
Kerr, M.K.1
Churchill, G.A.2
-
17
-
-
0035032570
-
Statistical design and the analysis of gene expression microarrays
-
Kerr, M.K., and Churchill, G.A. 2001b. Statistical design and the analysis of gene expression microarrays. Genet. Res. 77, 123-128.
-
(2001)
Genet. Res.
, vol.77
, pp. 123-128
-
-
Kerr, M.K.1
Churchill, G.A.2
-
18
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
Kerr, M.K., Martin, M., and Churchill, G.A. 2000. Analysis of variance for gene expression microarray data. J. Comp. Biol. 7, 819-837.
-
(2000)
J. Comp. Biol.
, vol.7
, pp. 819-837
-
-
Kerr, M.K.1
Martin, M.2
Churchill, G.A.3
-
19
-
-
18844455409
-
-
Manuscript
-
Lewin, A., Richardson, S., Marshall, C., Glazier, A., and Aitman, T. 2004. Bayesian modelling of differential gene expression. Manuscript.
-
(2004)
Bayesian Modelling of Differential Gene Expression
-
-
Lewin, A.1
Richardson, S.2
Marshall, C.3
Glazier, A.4
Aitman, T.5
-
20
-
-
0000810338
-
A statistical paradox
-
Lindley, D.V. 1957. A statistical paradox. Biometrika 44, 187-192.
-
(1957)
Biometrika
, vol.44
, pp. 187-192
-
-
Lindley, D.V.1
-
22
-
-
0036203115
-
A mixture model-based approach to the clustring of microarray expression data
-
McLachlan, G.J., Bean, R.W., and Peel, D. 2002. A mixture model-based approach to the clustring of microarray expression data. Bioinformatics 18, 413-422.
-
(2002)
Bioinformatics
, vol.18
, pp. 413-422
-
-
McLachlan, G.J.1
Bean, R.W.2
Peel, D.3
-
24
-
-
0034923013
-
On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
-
Newton, M.A., Kenziorski, C.M., Richmond, C.S., Blattner, F.R., and Tsui, K.W. 2001. On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data. J. Comp. Biol. 8, 37-52.
-
(2001)
J. Comp. Biol.
, vol.8
, pp. 37-52
-
-
Newton, M.A.1
Kenziorski, C.M.2
Richmond, C.S.3
Blattner, F.R.4
Tsui, K.W.5
-
25
-
-
4444235995
-
Detecting differential gene expression with a semiparametric hierarchial mixture method
-
Newton, M.A., Noueiry, A., Sarkar, D., and Ahlquist, P. 2004. Detecting differential gene expression with a semiparametric hierarchial mixture method. Biostatistics 5, 155-176.
-
(2004)
Biostatistics
, vol.5
, pp. 155-176
-
-
Newton, M.A.1
Noueiry, A.2
Sarkar, D.3
Ahlquist, P.4
-
26
-
-
0036051492
-
How many replicaties of array are required to detect gene expression changes in microarray experiments? A mixture model approach
-
research0022.1-0022.10
-
Pan, W., Lin, J., and Le, C.T. 2002. How many replicaties of array are required to detect gene expression changes in microarray experiments? A mixture model approach. Genome Biology 3, research0022.1-0022.10.
-
(2002)
Genome Biology
, vol.3
-
-
Pan, W.1
Lin, J.2
Le, C.T.3
-
27
-
-
18144442687
-
Inferring subnetworks from perturbed expression profiles
-
Pe'er, D., Regev, A., Elidan, G., and Friedman, N. 2001. Inferring subnetworks from perturbed expression profiles. Bioinformatics 17, S1, S215-224.
-
(2001)
Bioinformatics
, vol.17
-
-
Pe'er, D.1
Regev, A.2
Elidan, G.3
Friedman, N.4
-
28
-
-
0000196746
-
Convergence rates for partially splined models
-
Rice, J. 1986. Convergence rates for partially splined models. Statistics and Probability Letter 4, 203-208.
-
(1986)
Statistics and Probability Letter
, vol.4
, pp. 203-208
-
-
Rice, J.1
-
29
-
-
0035752668
-
Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data
-
Schadt, E.E., Li, C., Ellis, B., and Wong, W.H. 2002. Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data. J. Cell. Biochem. Suppl. 37, 120-125.
-
(2002)
J. Cell. Biochem. Suppl.
, vol.37
, pp. 120-125
-
-
Schadt, E.E.1
Li, C.2
Ellis, B.3
Wong, W.H.4
-
30
-
-
0037306655
-
Partial resistance of tomato to Phytophthora infestans is not dependent upon ethylene, jasmonic acid or salicylic acid signaling pathways
-
Smart, C.D., Myers, K.L., Restrepo, S., Martin, G.B., and Fry, W.E. 2003. Partial resistance of tomato to Phytophthora infestans is not dependent upon ethylene, jasmonic acid or salicylic acid signaling pathways. Mol. Plant-Microbe Interact. 16, 141-148.
-
(2003)
Mol. Plant-Microbe Interact.
, vol.16
, pp. 141-148
-
-
Smart, C.D.1
Myers, K.L.2
Restrepo, S.3
Martin, G.B.4
Fry, W.E.5
-
31
-
-
0038048164
-
Statistical issues in cDNA microarray data analysis
-
To appear, M.J. Brownstein and A.B. Khodursky, eds., Humana Press, Totowa, NJ
-
Smyth, G.K., Yang, Y.H., and Speed, T. 2002. Statistical issues in cDNA microarray data analysis. To appear in M.J. Brownstein and A.B. Khodursky, eds., Functional Genomics: Methods and Protocols. Methods in Molecular Biology Series, Humana Press, Totowa, NJ.
-
(2002)
Functional Genomics: Methods and Protocols. Methods in Molecular Biology Series
-
-
Smyth, G.K.1
Yang, Y.H.2
Speed, T.3
-
32
-
-
0000713437
-
Kernel smoothing in partial linear models
-
Speckman, P. 1988. Kernel smoothing in partial linear models. J. Roy. Statist. Soc. B 50, 413-436.
-
(1988)
J. Roy. Statist. Soc. B
, vol.50
, pp. 413-436
-
-
Speckman, P.1
-
33
-
-
0035875553
-
Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
-
Tseng, G.G., Oh, M.-K., Rohlin, L., Liao, J.C., and Wong, W.H. 2001. Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects. Nucl. Acids Res. 29, 2549-2557.
-
(2001)
Nucl. Acids Res.
, vol.29
, pp. 2549-2557
-
-
Tseng, G.G.1
Oh, M.-K.2
Rohlin, L.3
Liao, J.C.4
Wong, W.H.5
-
34
-
-
0033739620
-
Does basal PR gene expression in Solanum species contribute to non-specific resistance to Phytophthora infestans?
-
Vleeshouwers, V.G.A.A., van Dooifeweert, W., Govers, F., Kamoun, S., and Colon, L.T. 2000. Does basal PR gene expression in Solanum species contribute to non-specific resistance to Phytophthora infestans? Physiol. Mol. Plant Pathol. 57, 35-42.
-
(2000)
Physiol. Mol. Plant Pathol.
, vol.57
, pp. 35-42
-
-
Vleeshouwers, V.G.A.A.1
Van Dooifeweert, W.2
Govers, F.3
Kamoun, S.4
Colon, L.T.5
-
35
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
Wolfinger, R.D., Gibson, G., Wofinger, E.D., Bennett, L., Hamadeh, H., Bushel, P., Afshari, C., and Paules, R.S. 2001. Assessing gene significance from cDNA microarray expression data via mixed models. J. Comp. Biol. 8, 625-637.
-
(2001)
J. Comp. Biol.
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wofinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.S.8
-
36
-
-
0003576795
-
-
Yang, Y.H., Buckley, M.J., Dudoit, S., and Speed, T.P. 2000. Comparison of methods for image analysis on cDNA microarray data. www.stat.Berkeley.EDU/ users/terry/zarray/Html/image.html.
-
(2000)
Comparison of Methods for Image Analysis on cDNA Microarray Data
-
-
Yang, Y.H.1
Buckley, M.J.2
Dudoit, S.3
Speed, T.P.4
-
37
-
-
1342294092
-
Normalization of cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J., and Speed, T.P. 2002. Normalization of cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucl. Acids Res. 30(4), e15.
-
(2002)
Nucl. Acids Res
, vol.30
, Issue.4
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
38
-
-
0034869983
-
Normalization for cDNA microarray data
-
M.L. Bittner, Y. Chen, A.N. Dorsel, and E.R. Dougherty, eds. of Proceedings of SPIE
-
Yang, Y.H., Dudoit, S., Luu, P., and Speed, T.P. 2001. Normalization for cDNA microarray data, in M.L. Bittner, Y. Chen, A.N. Dorsel, and E.R. Dougherty, eds., Microarrays: Optical Technologies and Informatics, vol. 4266 of Proceedings of SPIE.
-
(2001)
Microarrays: Optical Technologies and Informatics
, vol.4266
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Speed, T.P.4
-
39
-
-
0036319960
-
Design issues for cDNA microarray experiments
-
Yang, Y.H., and Speed, T. 2002. Design issues for cDNA microarray experiments. Nature Genet. 3, 579-588.
-
(2002)
Nature Genet.
, vol.3
, pp. 579-588
-
-
Yang, Y.H.1
Speed, T.2
|