High-resolution array CGH increases heterogeneity tolerance in the analysis of clinical samples

Genomics

Volumn 85, Issue 6, 2005, Pages 790-793

  Garnis, Cathie ^a   Coe, Bradley P ^a   Lam, Stephen L ^b   MacAulay, Calum ^b   Lam, Wan L ^a  

^a Department of Cancer Genetics ^*  (Canada)

^b BRITISH COLUMBIA CANCER RESEARCH CENTRE   (Canada)

Author keywords

Array CGH; Matrix CGH; Microdissection; Normal cell contamination; SMRT array; Tiling path array; Tissue heterogeneity

Indexed keywords

ARTICLE; CANCER TISSUE; CELL STIMULATION; COMPARATIVE GENOMIC HYBRIDIZATION; DNA MICROARRAY; GENETIC HETEROGENEITY; HUMAN; HUMAN TISSUE; MICRODISSECTION; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; VALIDATION PROCESS;

GENOME, HUMAN; HUMANS; NEOPLASMS; NUCLEIC ACID HYBRIDIZATION; SENSITIVITY AND SPECIFICITY; TUMOR MARKERS, BIOLOGICAL;

EID: 18844365615     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ygeno.2005.02.015     Document Type: Article

References (11)

1. J.R. Pollack, C.M. Perou, A.A. Alizadeh, M.B. Eisen, A. Pergamenschikov, and C.F. Williams Genome-wide analysis of DNA copy-number changes using cDNA microarrays Nat. Genet. 23 1999 41 46
2. A.M. Snijders, N. Nowak, R. Segraves, S. Blackwood, N. Brown, and J. Conroy Assembly of microarrays for genome-wide measurement of DNA copy number Nat. Genet. 29 2001 263 264
3. R. Lucito, J. Healy, J. Alexander, A. Reiner, D. Esposito, and M. Chi Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation Genome Res. 13 2003 2291 2305
4. A.S. Ishkanian, C.A. Malloff, S.K. Watson, R.J. De Leeuw, B. Chi, and B.P. Coe A tiling resolution DNA microarray with complete coverage of the human genome Nat. Genet. 36 2004 299 303
5. C. Garnis, C. Baldwin, L. Zhang, M.P. Rosin, and W.L. Lam Use of complete coverage array comparative genomic hybridization to define copy number alterations on chromosome 3p in oral squamous cell carcinomas Cancer Res. 63 2003 8582 8585
6. B. Carvalho, E. Ouwerkerk, G.A. Meijer, and B. Ylstra High resolution microarray comparative genomic hybridisation analysis using spotted oligonucleotides J. Clin. Pathol. 57 2004 644 646
7. Y. Daigo, S.F. Chin, K.L. Gorringe, L.G. Bobrow, B.A. Ponder, and P.D. Pharoah Degenerate oligonucleotide primed-polymerase chain reaction-based array comparative genomic hybridization for extensive amplicon profiling of breast cancers: a new approach for the molecular analysis of paraffin-embedded cancer tissue Am. J. Pathol. 158 2001 1623 1631
8. P.P. Massion, W.L. Kuo, D. Stokoe, A.B. Olshen, P.A. Treseler, and K. Chin Genomic copy number analysis of non-small cell lung cancer using array comparative genomic hybridization: implications of the phosphatidylinositol 3-kinase pathway Cancer Res. 62 2002 3636 3640
9. G. Wang, C. Brennan, M. Rook, J.L. Wolfe, C. Leo, and L. Chin Balanced-PCR amplification allows unbiased identification of genomic copy changes in minute cell and tissue samples Nucleic Acids Res. 32 2004 e76
10. R.J. De Leeuw, J.J. Davies, A. Rosenwald, G. Bebb, R.D. Gascoyne, and M.J. Dyer Comprehensive whole genome array CGH profiling of mantle cell lymphoma model genomes Hum. Mol. Genet. 13 2004 1827 1837
11. B. Chi, R.J. DeLeeuw, B.P. Coe, C. MacAulay, and W.L. Lam SeeGH-A software tool for visualization of whole genome array comparative genomic hybridization data BMC Bioinformat. 5 2004 13