SeeGH - A software tool for visualization of whole genome array comparative genomic hybridization data

BMC Bioinformatics

Volumn 5, Issue , 2004, Pages

  Chi, Bryan ^a   deLeeuw, Ronald J ^a   Coe, Bradley P ^a   MacAulay, Calum ^a   Lam, Wan L ^a  

^a BRITISH COLUMBIA CANCER RESEARCH CENTRE   (Canada)

Author keywords

aCGH; Array comparitve genomic hybridization

Indexed keywords

CHROMOSOMES; COMPUTER SOFTWARE; DNA; GENE ENCODING; STATISTICS; VISUALIZATION;

ACGH; CHROMOSOMAL LOCATION; CHROMOSOMAL REGIONS; COMPARATIVE GENOMIC HYBRIDIZATION DATUM; COMPARATIVE GENOMIC HYBRIDIZATIONS; GENOMIC HYBRIDIZATION; MICROARRAY IMAGE ANALYSIS; VISUALIZATION TOOLS;

DATA VISUALIZATION;

DNA; DNA BASE; COMPLEMENTARY DNA;

ACCURACY; ARTICLE; BASE PAIRING; CALCULATION; CHROMOSOME; COMPARATIVE GENOMIC HYBRIDIZATION; COMPUTER GRAPHICS; COMPUTER PROGRAM; COMPUTER SYSTEM; CONTROLLED STUDY; DATA ANALYSIS; DATA BASE; DNA MICROARRAY; EXPERIMENTATION; GENBANK; GENE LOCATION; GENE SEQUENCE; GENETIC DISORDER; HUMAN; HUMAN CELL; IMAGE ANALYSIS; IMAGE DISPLAY; INFORMATION RETRIEVAL; KARYOTYPE; MALE; MOLECULAR CLONING; NOMENCLATURE; STANDARD; CHROMOSOME MAP; COMPARATIVE STUDY; COMPUTER INTERFACE; GENE DOSAGE; GENETICS; HUMAN GENOME; NUCLEIC ACID HYBRIDIZATION; STATISTICAL ANALYSIS; TRENDS;

CHROMOSOME MAPPING; COMPUTER GRAPHICS; DATA INTERPRETATION, STATISTICAL; DATABASE MANAGEMENT SYSTEMS; DNA, COMPLEMENTARY; GENE DOSAGE; GENOME, HUMAN; HUMANS; INFORMATION STORAGE AND RETRIEVAL; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SOFTWARE; SOFTWARE DESIGN; USER-COMPUTER INTERFACE;

EID: 2942511488     PISSN: 14712105     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2105-5-13     Document Type: Article

References (8)

1. Kallioniemi A, Kallioniemi OP, Sudar D, Rutovitz D, Gray JW, Waldman F, Pinkel D: Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 1992, 258:818-821.
2. Snijders AM, Nowak N, Segraves R, Blackwood S, Brown N, Conroy J, Hamilton G, Hindle AK, Huey B, Kimura K, Law S, Myambo K, Palmer J, Ylstra B, Yue JP, Gray JW, Jain AN, Pinkel D, Albertson DG: Assembly of microarrays for genome-wide measurement of DNA copy number. Nat Genet 2001, 29(3):263-4.
3. Human Genome Sequencing Consortium: Initial sequencing and analysis of the human genome. Nature 2002, 420:520-562.
4. Mouse Genome Sequencing Consortium: Initial sequencing and comparative analysis of the mouse genome. Nature 2002, 420:520-562.
5. MySQL 4.0 Downloads [http://www.mysql.com/downloads/mysql-4.0.html]
6. Human Genome Browser Gateway [http://www.genome.ucsc.edu/cgi-bin/hgGateway?org=human]
7. Array CGH [http://www.bccrc.ca/cg/ArrayCGH_Group.html]
8. Ishkanian AS, Malloff CA, Watson SK, deLeeuw RJ, Chi B, Coe BP, Snijders A, Albertson DG, Pinkel D, Marra MA, Ling V, MacAulay C, Lam WL: A tiling resolution DNA microarray with complete coverage of the human genome. Nat Genet 2004 in press.