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Volumn 21, Issue 9, 2005, Pages 1789-1796

A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas

Author keywords

[No Author keywords available]

Indexed keywords

DINUCLEOTIDE; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; MYOCYTE ENHANCER FACTOR 2; OCTAMER TRANSCRIPTION FACTOR 1; PROLYLLEUCYLGLYCINAMIDE; STAT1 PROTEIN; STAT3 PROTEIN; STEROL REGULATORY ELEMENT BINDING PROTEIN 1; STEROL REGULATORY ELEMENT BINDING PROTEIN 2; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR AP 2; TRANSCRIPTION FACTOR EGR 1; TRANSCRIPTION FACTOR PAX5; TRANSCRIPTION FACTOR SP1;

EID: 18744415729     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti307     Document Type: Article
Times cited : (21)

References (22)
  • 1
    • 0036013781 scopus 로고    scopus 로고
    • Is there a code for protein-DNA recognition? Probab(ilistical)ly
    • Benos,P.V. et al. (2002) Is there a code for protein-DNA recognition? Probab(ilistical)ly. Bioessays, 24, 466-475.
    • (2002) Bioessays , vol.24 , pp. 466-475
    • Benos, P.V.1
  • 2
    • 0028304861 scopus 로고
    • Evolutionary selection against change in many Alu repeat sequences interspersed through primate genomes
    • Britten,R.J. (1994) Evolutionary selection against change in many Alu repeat sequences interspersed through primate genomes. Proc. Natl Acad. Sci. USA, 91, 5992-5996.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 5992-5996
    • Britten, R.J.1
  • 3
    • 0034532675 scopus 로고    scopus 로고
    • The biology of the mammalian Kruppel-like family of transcription factors
    • Dang,D.T. et al. (2000) The biology of the mammalian Kruppel-like family of transcription factors. Int. J. Biochem. Cell Biol., 32, 1103-1121.
    • (2000) Int. J. Biochem. Cell Biol. , vol.32 , pp. 1103-1121
    • Dang, D.T.1
  • 4
    • 4444362206 scopus 로고    scopus 로고
    • Clustering of DNA sequences in human promoters
    • FitzGerald,P.C. et al. (2004) Clustering of DNA sequences in human promoters. Genome Res., 14, 1562-1574.
    • (2004) Genome Res. , vol.14 , pp. 1562-1574
    • FitzGerald, P.C.1
  • 6
    • 0021100793 scopus 로고
    • Search algorithm for pattern match analysis of nucleic acid sequences
    • Harr,R. et al. (1983) Search algorithm for pattern match analysis of nucleic acid sequences. Nucl. Acids Res., 11, 2943-2957.
    • (1983) Nucl. Acids Res. , vol.11 , pp. 2943-2957
    • Harr, R.1
  • 7
    • 0027404085 scopus 로고
    • DNA methylation and mutation
    • Holliday,R. and Grigg,G.W. (1993) DNA methylation and mutation. Mutat Res., 285, 61-67.
    • (1993) Mutat Res. , vol.285 , pp. 61-67
    • Holliday, R.1    Grigg, G.W.2
  • 8
    • 0031173051 scopus 로고    scopus 로고
    • The Evil proto-oncogene is required at midgestation for neural, heart, and paraxial mesenchyme development
    • Hoyt,P.R. et al. (1997) The Evil proto-oncogene is required at midgestation for neural, heart, and paraxial mesenchyme development. Mech. Dev., 65, 55-70.
    • (1997) Mech. Dev. , vol.65 , pp. 55-70
    • Hoyt, P.R.1
  • 9
    • 0035878743 scopus 로고    scopus 로고
    • Estrogen receptor interaction with estrogen response elements
    • Klinge,C.M. (2001) Estrogen receptor interaction with estrogen response elements. Nucl. Acids Res., 29, 2905-2919.
    • (2001) Nucl. Acids Res. , vol.29 , pp. 2905-2919
    • Klinge, C.M.1
  • 10
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander,E.S. et al. (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 11
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing Consortium
    • Mouse Genome Sequencing Consortium (2002) Initial sequencing and comparative analysis of the mouse genome. Nature, 420, 520-562.
    • (2002) Nature , vol.420 , pp. 520-562
  • 12
    • 2442704147 scopus 로고    scopus 로고
    • Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression
    • Murakami,K. et al. (2004) Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression. BMC Genomics, 5, 16.
    • (2004) BMC Genomics , vol.5 , pp. 16
    • Murakami, K.1
  • 13
    • 0033119642 scopus 로고    scopus 로고
    • The EGR family of transcription-regulatory factors: Progress at the interface of molecular and systems neuroscience
    • O'Donovan,K.J. et al. (1999) The EGR family of transcription-regulatory factors: progress at the interface of molecular and systems neuroscience. Trends Neurosci., 22, 167-173.
    • (1999) Trends Neurosci. , vol.22 , pp. 167-173
    • O'Donovan, K.J.1
  • 14
    • 0032972453 scopus 로고    scopus 로고
    • The one-to-four rule and paralogues of sex-determining genes
    • Ohno,S. (1999) The one-to-four rule and paralogues of sex-determining genes. Cell Mol. Life Sci., 55, 824-830.
    • (1999) Cell Mol. Life Sci. , vol.55 , pp. 824-830
    • Ohno, S.1
  • 15
    • 1542682570 scopus 로고    scopus 로고
    • Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates
    • Ohshima,K. et al. (2003) Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates. Genome Biol., 4, R74.
    • (2003) Genome Biol. , vol.4
    • Ohshima, K.1
  • 16
    • 0642306071 scopus 로고    scopus 로고
    • Evolution. Chimp genome draft online
    • Pennisi,E. (2003) Evolution. Chimp genome draft online. Science., 302, 1876.
    • (2003) Science , vol.302 , pp. 1876
    • Pennisi, E.1
  • 17
    • 0028971143 scopus 로고
    • MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
    • Quandt,K. et al. (1995) MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucl. Acids Res., 23, 4878-4884.
    • (1995) Nucl. Acids Res. , vol.23 , pp. 4878-4884
    • Quandt, K.1
  • 18
    • 0035968193 scopus 로고    scopus 로고
    • Novel Sp family-like transcription factors are present in adult insect cells and are involved in transcription from the polyhedrin gene initiator promoter
    • Ramachandran,A. et al. (2001) Novel Sp family-like transcription factors are present in adult insect cells and are involved in transcription from the polyhedrin gene initiator promoter. J. Biol. Chem., 276, 23440-23449.
    • (2001) J. Biol. Chem. , vol.276 , pp. 23440-23449
    • Ramachandran, A.1
  • 19
    • 1842684068 scopus 로고    scopus 로고
    • Genome sequence of the Brown Norway rat yields insights into mammalian evolution
    • Rat Genome Sequencing Consortium
    • Rat Genome Sequencing Consortium (2004) Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature, 428, 493-521.
    • (2004) Nature , vol.428 , pp. 493-521
  • 20
    • 0038648028 scopus 로고    scopus 로고
    • Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content
    • Sandberg,R. et al. (2003) Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content. Gene, 311, 35-42,
    • (2003) Gene , vol.311 , pp. 35-42
    • Sandberg, R.1
  • 21
    • 0025299347 scopus 로고
    • The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model
    • Sved,J. and Bird,A. (1990) The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model. Proc. Natl Acad. Sci. USA, 87, 4692-4696.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 4692-4696
    • Sved, J.1    Bird, A.2
  • 22
    • 1542580471 scopus 로고    scopus 로고
    • From transcription factors to designed sequence-specific DNA-binding peptides
    • Vazquez,M.E. et al. (2003) From transcription factors to designed sequence-specific DNA-binding peptides. Chem. Soc. Rev., 32, 338-349.
    • (2003) Chem. Soc. Rev. , vol.32 , pp. 338-349
    • Vazquez, M.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.