Functional succession of bacterioplankton on the basis of carbon source utilization ability by BIOLOG plates

Ecological Research

Volumn 16, Issue 5, 2001, Pages 905-912

  Matsui, Kazuaki ^a   Jun, Man Sig ^a   Ueki, Masaya ^a   Kawadata, ZeN'Ichiro ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

Bacterial diversity; BIOLOG; Carbon utilization profile; Functional succession

Indexed keywords

EID: 18744389826     PISSN: 09123814     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1440-1703.2001.00451.x     Document Type: Article

References (23)

1. AMANN R. I. (1995) Fluorescently labelled, rRNA targeted oligo nucleotide probes in the study of microbial ecology. Molecular Ecology 4: 543-554.
2. AZAM F., FENCHEL T., FIELD F. G., GRAY J. S. & MAYER-RIEL R. A. (1983) The ecological role of water-column microbes in the sea. Marine Ecology Progress Series 10: 257-263.
3. BAHR M., HOBBIE J. E. & SOGIN M. L. (1996) Bacterial diversity in an arctic lake: A freshwater SAR11 cluster. Aquatic Microbial Ecology 11: 271-277.
4. BERNARD L., SCHAEFER H., JOUX E. COURTIES C., MUYZER G. & LEBARON P. (2000) Genetic diversity of total active and culturable marine bacteria in coastal seawater. Aquatic Microbial Ecology 23: 1-11.
5. BOCHNER B. R. (1989) Sleuthing out bacterial identities. Nature 339: 157-158.
6. CHOI K.-H. & DOBBS F. C. (1999) Comparison of two kinds of Biolog microplates (GN and ECO) in their ability to distinguish among aquatic microbial communities. Journal of Microbiological Methods 36: 203-213.
7. CLESCERI L. S., GREENBERG A. E. & TRUSSELL R. R., eds (1989). Standard Methods; for the Examination of Water and Waste Water, 17th edn. American Public Health Association, Washington D.C.
8. FLIERMANS C. B., FRANCK M. M., HAZEN T. C. & GORDEN R. W. (1997) Ecofunctional enzymes of microbial communities in ground water. FEMS Microbiology Reviews 20: 379-389.
9. GAMO M. & SHOJI T. (1999) A method of profiling microbial communities based on a most-probable-number assay that uses BIOLOG plates and multiple sole carbon sources. Applied and Environmental Microbiology 65: 4419-4424.
10. GARLAND J. L. (1997) Analysis and interpretation of community-level physiological profiles in microbial ecology. FEMS Microbiology Ecology 24: 289-300.
11. GARLAND J. L. & MILLS A. L. (1991) Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level-sole-carbon-source utilization. Applied and Environmental Microbiology 57: 2351-2359.
12. GIOVANNONI S. J., BRITSCHGI T. B., MOYER C. L. & FIELD K. G. (1990) Genetic diversity in Sargasso Sea bacterioplankton. Nature 345: 60-63.
13. HEUER H. & SMALLA K. (1997) Evaluation of community-level catabolic profiling using BIOLOG GN microplates to study microbial community changes in potato phylloosphere. Journal of Microbiological Methods 30: 49-61.
14. HORNE A. J. & GOLDMAN C. R. (1994) Limnology, 2nd edn. McGraw-Hill Inc, New York.
15. JELLETT J. F., LI W. K. W., DICKIE P. M., BORAIE A. & KEPKAY P. E. (1996) Metabolic activity of bacterioplankton communities assessed by flow cytometry and single carbon substrate utilization. Marine Ecology Progress Series 136: 213-225.
16. KEPNER JR R. L. & PRATT J. R. (1994) Use of fluorochromes for direct enumeration of total bacteria in environmental samples: Past and present. Microbiological Reviews 58: 603-615.
17. KILHAM S. S., KREEGER D. A., LYNN S. G., GOULDEN C. E. & HERRERA L. (1998) COMBO: A defined freshwater culture medium for algae and Zooplankton. Hydrobiologia 377: 147-159.
18. KONOPKA A., OLIVER L. & TURCO JR R. F. (1998) The use of carbon substrate utilization patterns in environmental and ecological microbiology. Microbial Ecology 35: 103-115.
19. LAWLOR K., KNIGHT B. P., BARBOSA-JEFFERSON V. L., LANE P. W., LILLEY A. K., PATON G. I., MCGRATH S. P., O'FLAHERTY S. M. & HIRSCH P. R. (2000) Comparison of methods to investigate microbial populations in soils under different agricultural management. FEMS Microbiology Ecology 33: 129-137.
20. MAYR C., WINDING A. & HENDRIKSEN N. B. (1999) Community level physiological profile of soil bacteria unaffected by extraction method. Journal of Microbiological Methods 36: 29-33.
21. OHARA S., FUKAMI K. & ISHIDA Y. (1993) Algal effects on the bacterial assemblage in Lake Biwa. Japanese Journal of Limnology 54: 261-268.
22. PORTER K. G. & FEIG Y. S. (1980) The use of DAPI for identifying and counting aquatic microflora. Limnology and Oceanography 25: 943-948.
23. SCHULTZ JR G. E. & DUCKLOW H. (2000) Changes in bacterioplankton metabolic capabilities along a salinity gradient in the York River estuary, Virginia, USA. Aquatic Microbial Ecology 22: 163-174.