Application of PCR Primer Pairs from Rainbow Trout to Detect Polymorphisms of CA Repeat DNA Loci in Five Confamilial Species

Fisheries Science

Volumn 62, Issue 4, 1996, Pages 552-555

  Sakamoto, Takashi ^a   Okamoto, Nobuaki ^a   Ikeda, Yayoi ^a  

^a TOKYO UNIVERSITY OF MARINE SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

Dinucleotide repeat polymorphism; Genetic mapping; Linkage analysis; Microsatellite; Rainbow trout

Indexed keywords

MAMMALIA; ONCORHYNCHUS MYKISS; SALMONIDAE;

EID: 0001147015     PISSN: 09199268     EISSN: None     Source Type: Journal    
DOI: 10.2331/fishsci.62.552     Document Type: Article

References (34)

1. R. Miesfeld, M. Krystal, and N. Arnheim: A member of a new repeated sequence family which is conserved throughout eucaryotic evolution is found between the human δ and β globin genes. Nucleic Acids Res., 9, 5931-5947 (1981).
2. H. Hamada and T. Kakunaga: Potential Z-DNA forming sequences are highly dispersed in the human genome. Nature, 298, 396-398 (1982).
3. n repetitive sequences in mammalian genomes. Genomics, 10, 807-815 (1991).
4. M. Litt and J. A. Luty: A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am. J. Hum. Genet., 44, 397-401 (1989).
5. D. Tautz: Hyper variability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res., 17, 6463-6471 (1989).
6. J. L. Weber and P. E. May: Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet., 44, 388-396 (1989).
7. R. Fries, A. Eggen, and G. Stranzinger: The bovine genome contains polymorphic microsatellites. Genomics, 8, 403-406 (1990).
8. J. L. Weber: Human DNA polymorphisms based on length variations in simple-sequence tandem repeats, in "Genome Analysis(ed. by K. E. Davies and S. M. Tilghman), Vol. 1, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, 1992, pp. 159-181.
9. N. J. Royle, R. E. Charkson, Z. Wong, and A. J. Jeffreys: Clustering of hypervariable minisatellites in the proterminal regions of human autosomes. Genomics, 3, 352-360 (1988).
10. J. S. Beckmann and J. L. Weber: Survey of human and rat microsatellites. Genomics, 12, 627-631 (1992).
11. J. M. Love, A. M. Knight, M. A. Mcaleer, and J. A. Tod: Towards construction of a high resolution map of the mouse genome using PCR-analysed microsatellites. Nucleic Acids Res., 18, 4123-4130 (1990).
12. H. Hamada, M.G. Petrino, and T. Kakunaga: A novel repeated element with Z-DNA-forming potential is widely found in evolutionarily diverse eukaryotic genomes. Proc. Natl. Acad Sci. U.S.A., 79, 6465-6469 (1982).
13. M. Georges, A. B. Diets, A. Mishra, D. Nielsen, L. S. Sargeant, A. Scorensen, M. R. Steele, X. Zhao, H. Leipold, J. E. Womack, and M. Lathrop: Microsatellite mapping of the gene causing weaver disease in cattle will allow the study of an associated quantitative trait locus. Proc. Natl. Acad Sci. U.S.A., 90, 1058-1062 (1993).
14. D. J. Kwiatkowski, E. P. Henske, K. Weimer, L. Ozelius, J. F. Gusella, and J. Haines: Construction of GT polymorphism map of human 9q. Genomics, 12, 229-240 (1992).
15. J. M. Hall, L. Friedman, C. Guenther, M. K. Lee, J. L. Weber, D. M. Black, and M.-C. King: Closing in on a breast cancer gene on chromosome 17q. Am. J. Hum. Genet., 50, 1235-1242 (1992).
16. C. Schlotterer, B. Amos, and D. Tautz; Conservation of polymorphic sample sequence loci in cetacean species. Nature, 354, 63-65 (1991).
17. T. Sakamoto, N. Okamoto, Y. Ikeda, Y. Nakamura, and T. Sato: Dinucleotide-repeat polymorphism in DNA of rainbow trout, Oncorhynchus mykiss, and its application in fisheries science. J. Fish Biol., 44, 1093-1096 (1994).
18. T. Sakamoto, N. Okamoto, and Y. Ikeda: Dinucleotide repeat polymorphism of rainbow trout, FGT2. J. Anim. Sci., 72, 2765 (1994).
19. T. Sakamoto, N. Okamoto, and Y. Ikeda: Dinucleotide repeat polymorphism of rainbow trout, FGT3. J. Anim. Sci., 72, 2766 (1994).
20. T. Sakamoto, N. Okamoto, and Y. Ikeda: Dinucleotide repeat polymorphism of rainbow trout, FGT4. J. Anim. Sci., 72, 2767 (1994).
21. T. Sakamoto, N. Okamoto, and Y. Ikeda: Dinucleotide repeat polymorphism of rainbow trout, FGT5. J. Anim. Sci., 72, 2768 (1994).
22. S. S. Moore, L. L. Sargeant, J. King, J. S. Mattick, M. Georges, and D. J. S. Hetzel: The conservation of dinucleotide microsatellites among mammalian genomes allows the use of heterologous PCR primer pairs in closely related species. Genomics, 10, 654-660 (1991).
23. P. Bentzen, S. Harris, and M. Wright: Cloning of hypervariable minisatellite and simple sequence microsatellite repeats for DNA fingerprinting of important aquacultural species of salmonids and Tilapia, in "DNA Fingerprinting: Approaches and Applications(ed. by T. T. Burke, G. Dolf, and R. Wolff), Birkhauser Verlag, Bern, 1991, pp. 243-262.
24. W. M. Strauss: Preparation of genomic DNA from mammalian tissue, in "Current Protocols" (ed. by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, K. Struhl), Vol. 1, John Wiley & Sons, New York, 1987, pp. 2.2.1-2.2.3.
25. K. Yamakawa, R. Morita, E. Takahashi, T. Hori, M. Lathrop, and Y. Nakamura: A genetic linkage map of 41 restriction fragment length polymorphism markers for human chromosome 3. Genomics, 11, 565-572 (1991).
26. K. W. Kinzler, M. C. Nilbert, L-K. Su, B. Vogelstein, T. M. Bryan, D. B. Levy, K. J. Smith, A. C. Preisinger, P. Hedge, D. McKechnie, P. Finniear, A. Markham, J. Groffen, M. S. Boguski, S. F. Altschul, A. Horii, H. Ando, Y. Miyoshi, Y. Miki, I. Nishisho, and Y. Nakamura: Identification of FAP locus genes from chromosome 5q21. Science, 253, 661-665 (1991).
27. J. R. Riordan, J. M. Rommens, B-S. Kerem, N. Alon, R. Rozmahel, Z. Grzelczak, J. Zielenski, S. Lok, N. Plavsic, J-L. Chou, M. L. Drumm, M. C. Iannuzzi, F. C. Collins, and L-C. Tsui: Identification of the cystic fibrosis gene; Cloning and characterization of complementary DNA. Science, 245, 1066-1073 (1989).
28. D. Viskochil, A. M. Buchberg, G. Xu, R. M. Cawthon, J. Stevens, R. K. Woff, M. Culver, J. C. Carey, N. G. Copeland, N. A. Jenkins, R. White, and P. O'Connell: Detections and a translocation interrupt a cloned gene at the neurofibromatosis type 1 locus. Cell, 62, 187-192 (1990).
29. R. M. Cawthon, R. Weiss, G. Xu, D. Viskochil, M. Culver, J. Stevens, M. Robertson, D. Dunn, R. Gesteland, P. O'Connell, and R. White: A major segment of the neurofibromatosis type 1 gene; cDNA sequence, genomic structure, and point mutations. Cell, 62, 193-201 (1990).
30. M. R. Wallace, D. A. Marchuk, L. B. Andersen, R. Letcher, H. M. Odeh, A. M. Saulino, J. W. Fountain, A. Brereton, J. Nicholson, A. L. Mitchell, B. H. Brownstein, and F. C. Collins: Type 1 neurofibromatosis gene; Identification of a large transcript disrupted in three NF1 patients. Science, 249, 181-186 (1990).
31. T. Sato, A. Tanigami, K. Yamakawa, F. Akiyama, F. Kasumi, G. Sakamoto, and Y. Nakamura: Allelotype of breast cancer; Cumulative allele losses promote tumor progression in primary breast cancer. Cancer Res., 50, 5794-5799 (1991).
32. S. Murata, N. Takasaki, M. Saitoh, and N. Okada: Determination of the phylogenetic relationships among Pacific salmonids by using short interspersed elements (SINEs) as temporal landmarks of evolution. Proc. Natl. Acad. Sci. U.S.A., 90, 6995-6999 (1993).
33. N. Zhang and J. E. Womack: Synteny mapping in the bovine; Genes from human chromosome 5. Genomics, 14, 126-130 (1992).
34. E. F. Remmers, E. A. Goldmuntz, H. Zha, P. Mathern, Y. Du, L. J. Crofford, and R. L. Wilder: Linkage map of nine loci defined by polymorphic DNA markers assigned to rat chromosome 13. Genomics, 18, 277-282 (1993).