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Volumn 38, Issue 5, 2005, Pages 715-720

Management and visualization of whole genome shotgun assemblies using SAM

Author keywords

[No Author keywords available]

Indexed keywords

ASSEMBLY; COMPUTER SOFTWARE; GATEWAYS (COMPUTER NETWORKS); INTERFACES (COMPUTER); RELATIONAL DATABASE SYSTEMS; VISUALIZATION; WORLD WIDE WEB;

EID: 18444396168     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/05385ST01     Document Type: Article
Times cited : (6)

References (13)
  • 1
    • 0028074648 scopus 로고
    • The Genome Reconstruction Manager: A software environment for supporting high-throughput DNA sequencing
    • Lawrence, C.B., S. Honda, N.W. Parrott, T.C. Flood, L. Gu, L. Zhang, M. Jain, S. Larson, et al. 1994. The Genome Reconstruction Manager: a software environment for supporting high-throughput DNA sequencing. Genomics 23: 192-201.
    • (1994) Genomics , vol.23 , pp. 192-201
    • Lawrence, C.B.1    Honda, S.2    Parrott, N.W.3    Flood, T.C.4    Gu, L.5    Zhang, L.6    Jain, M.7    Larson, S.8
  • 4
    • 0037263854 scopus 로고    scopus 로고
    • The phusion assembler
    • Mullikin, J.C. and Z. Ning. 2003. The phusion assembler. Genome Res. 13:81-90.
    • (2003) Genome Res. , vol.13 , pp. 81-90
    • Mullikin, J.C.1    Ning, Z.2
  • 6
    • 0025776579 scopus 로고
    • A sequence assembly and editing program for efficient management of large projects
    • Dear, S. and R. Staden. 1991. A sequence assembly and editing program for efficient management of large projects. Nucleic Acids Res. 19:3907-3911.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 3907-3911
    • Dear, S.1    Staden, R.2
  • 7
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon, D., C. Abajian, and P. Green. 1998. Consed: a graphical tool for sequence finishing. Genome Res. 8:195-202.
    • (1998) Genome Res. , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 9
    • 0035875343 scopus 로고    scopus 로고
    • GeneMarkS: A self-training method for gene starts in microbial genomes. Implication for finding sequence motifs in regulatory regions
    • Besemer, J., A. Lomsadze, and M. Borodovsky. 2001. GeneMarkS: a self-training method for gene starts in microbial genomes. Implication for finding sequence motifs in regulatory regions. Nucleic Acids Res. 29:2607-2618.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2607-2618
    • Besemer, J.1    Lomsadze, A.2    Borodovsky, M.3
  • 11
    • 0030690108 scopus 로고    scopus 로고
    • FPC: A system for building contigs from restriction fingerprinted clones
    • Soderlund, C., I. Longden, and R. Mott. 1997. FPC: a system for building contigs from restriction fingerprinted clones. Comput. Appl. Biosci. 13:523-535.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 523-535
    • Soderlund, C.1    Longden, I.2    Mott, R.3
  • 12
    • 7744227670 scopus 로고    scopus 로고
    • Functional characterization of a catabolic plasmid from polychlorinated-biphenyl-degrading Rhodococcus sp. strain RHA1
    • Warren, R., W.W.L. Hsiao, H. Kudo, M. Myhre, M. Dosanjh, A. Petrescu, H. Kobayashi, S. Shimizu, et al. 2004. Functional characterization of a catabolic plasmid from polychlorinated-biphenyl-degrading Rhodococcus sp. strain RHA1. J. Bacteriol. 186:7783-7795.
    • (2004) J. Bacteriol. , vol.186 , pp. 7783-7795
    • Warren, R.1    Hsiao, W.W.L.2    Kudo, H.3    Myhre, M.4    Dosanjh, M.5    Petrescu, A.6    Kobayashi, H.7    Shimizu, S.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.