-
1
-
-
0028074648
-
The Genome Reconstruction Manager: A software environment for supporting high-throughput DNA sequencing
-
Lawrence, C.B., S. Honda, N.W. Parrott, T.C. Flood, L. Gu, L. Zhang, M. Jain, S. Larson, et al. 1994. The Genome Reconstruction Manager: a software environment for supporting high-throughput DNA sequencing. Genomics 23: 192-201.
-
(1994)
Genomics
, vol.23
, pp. 192-201
-
-
Lawrence, C.B.1
Honda, S.2
Parrott, N.W.3
Flood, T.C.4
Gu, L.5
Zhang, L.6
Jain, M.7
Larson, S.8
-
2
-
-
0035224746
-
Design of a compartmentalized shotgun assembler for the human genome
-
Huson, D.H., K. Reinert, S.A. Kravitz, K.A. Remington, A.L. Delcher, I.M. Dew, M. Flanigan, A.L. Halpern, et al. 2001. Design of a compartmentalized shotgun assembler for the human genome. Bioinformatics 17:(Suppl 1)S132-S139.
-
(2001)
Bioinformatics
, vol.17
, Issue.1 SUPPL.
-
-
Huson, D.H.1
Reinert, K.2
Kravitz, S.A.3
Remington, K.A.4
Delcher, A.L.5
Dew, I.M.6
Flanigan, M.7
Halpern, A.L.8
-
3
-
-
0036144823
-
ARACHNE: A whole-genome shotgun assembler
-
Batzoglou, S., D.B. Jaffe, K. Stanley, J. Butler, S. Gnerre, E. Mauceli, B. Berger, J.P. Mesirov, et al. 2002. ARACHNE: a whole-genome shotgun assembler. Genome Res. 12:177-189.
-
(2002)
Genome Res.
, vol.12
, pp. 177-189
-
-
Batzoglou, S.1
Jaffe, D.B.2
Stanley, K.3
Butler, J.4
Gnerre, S.5
Mauceli, E.6
Berger, B.7
Mesirov, J.P.8
-
4
-
-
0037263854
-
The phusion assembler
-
Mullikin, J.C. and Z. Ning. 2003. The phusion assembler. Genome Res. 13:81-90.
-
(2003)
Genome Res.
, vol.13
, pp. 81-90
-
-
Mullikin, J.C.1
Ning, Z.2
-
5
-
-
0141853948
-
PCAP: A whole-genome assembly program
-
Huang, X., J. Wang, S. Aluru, S.-P. Yang, and L. Hillier. 2003. PCAP: a whole-genome assembly program. Genome Res. 13:2164-2170.
-
(2003)
Genome Res.
, vol.13
, pp. 2164-2170
-
-
Huang, X.1
Wang, J.2
Aluru, S.3
Yang, S.-P.4
Hillier, L.5
-
6
-
-
0025776579
-
A sequence assembly and editing program for efficient management of large projects
-
Dear, S. and R. Staden. 1991. A sequence assembly and editing program for efficient management of large projects. Nucleic Acids Res. 19:3907-3911.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 3907-3911
-
-
Dear, S.1
Staden, R.2
-
7
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon, D., C. Abajian, and P. Green. 1998. Consed: a graphical tool for sequence finishing. Genome Res. 8:195-202.
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
8
-
-
0033485517
-
Improved microbial gene identification with Glimmer
-
Delcher, A.L., D. Harmon, S. Kasif, O. White, and S.L. Salzberg. 1999. Improved microbial gene identification with Glimmer. Nucleic Acids Res. 27:4636-4641.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
9
-
-
0035875343
-
GeneMarkS: A self-training method for gene starts in microbial genomes. Implication for finding sequence motifs in regulatory regions
-
Besemer, J., A. Lomsadze, and M. Borodovsky. 2001. GeneMarkS: a self-training method for gene starts in microbial genomes. Implication for finding sequence motifs in regulatory regions. Nucleic Acids Res. 29:2607-2618.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2607-2618
-
-
Besemer, J.1
Lomsadze, A.2
Borodovsky, M.3
-
10
-
-
0036211834
-
Assembly of fingerprint contigs: Parallelized FPC
-
Ness, S.R., W. Terpstra, M. Krzywinski, M.A. Marra, and S.J. Jones. 2002. Assembly of fingerprint contigs: parallelized FPC. Bioinformatics 18:484-485.
-
(2002)
Bioinformatics
, vol.18
, pp. 484-485
-
-
Ness, S.R.1
Terpstra, W.2
Krzywinski, M.3
Marra, M.A.4
Jones, S.J.5
-
11
-
-
0030690108
-
FPC: A system for building contigs from restriction fingerprinted clones
-
Soderlund, C., I. Longden, and R. Mott. 1997. FPC: a system for building contigs from restriction fingerprinted clones. Comput. Appl. Biosci. 13:523-535.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 523-535
-
-
Soderlund, C.1
Longden, I.2
Mott, R.3
-
12
-
-
7744227670
-
Functional characterization of a catabolic plasmid from polychlorinated-biphenyl-degrading Rhodococcus sp. strain RHA1
-
Warren, R., W.W.L. Hsiao, H. Kudo, M. Myhre, M. Dosanjh, A. Petrescu, H. Kobayashi, S. Shimizu, et al. 2004. Functional characterization of a catabolic plasmid from polychlorinated-biphenyl-degrading Rhodococcus sp. strain RHA1. J. Bacteriol. 186:7783-7795.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 7783-7795
-
-
Warren, R.1
Hsiao, W.W.L.2
Kudo, H.3
Myhre, M.4
Dosanjh, M.5
Petrescu, A.6
Kobayashi, H.7
Shimizu, S.8
-
13
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., W. Gish, W. Miller, E.W. Myers, and D.J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
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