메뉴 건너뛰기




Volumn 5, Issue 6, 2003, Pages 809-819

Isolation and characterisation of microsatellites for Xiphinema index using degenerate oligonucleotide primed PCR

Author keywords

Diagnostics; DOP PCR; Genetic diversity; Interspersed element; Molecular plant parasitic nematode

Indexed keywords

GENETIC VARIATION; NEMATODE; POLYMERASE CHAIN REACTION;

EID: 1842735944     PISSN: 13885545     EISSN: None     Source Type: Journal    
DOI: 10.1163/156854103773040718     Document Type: Article
Times cited : (14)

References (54)
  • 1
    • 0027324125 scopus 로고
    • The human D11S554 locus: Four distinct families of repeat pattern alleles at one locus
    • ADAMS, M., URQUHART, A., KIMPTON, C. & GILL, P. (1993). The human D11S554 locus: four distinct families of repeat pattern alleles at one locus. Human Molecular Genetics 2, 1373-1376.
    • (1993) Human Molecular Genetics , vol.2 , pp. 1373-1376
    • Adams, M.1    Urquhart, A.2    Kimpton, C.3    Gill, P.4
  • 2
    • 0029121722 scopus 로고
    • Alu repeats: A source for the genesis of primate microsatellites
    • ARCOT, S.S., WANG, Z., WEBER, J.L., DEININGER, P.L. & BATZER, M.A. (1995). Alu repeats: a source for the genesis of primate microsatellites. Genomics 29, 136-144.
    • (1995) Genomics , vol.29 , pp. 136-144
    • Arcot, S.S.1    Wang, Z.2    Weber, J.L.3    Deininger, P.L.4    Batzer, M.A.5
  • 3
    • 0029028720 scopus 로고
    • Genotypic analysis of multiple loci in somatic cells by whole genome amplification
    • BARRETT, M.T., REID, B.J. & JOSLYN, G. (1995). Genotypic analysis of multiple loci in somatic cells by whole genome amplification. Nucleic Acids Research 23, 3488-3492.
    • (1995) Nucleic Acids Research , vol.23 , pp. 3488-3492
    • Barrett, M.T.1    Reid, B.J.2    Joslyn, G.3
  • 4
    • 0001772214 scopus 로고
    • An examination of methods used to extract virus-vector nematodes (Nematoda: Longidoridae and Trichodoridae) from soil samples
    • BROWN, D.J.F. & BOAG, B. (1988). An examination of methods used to extract virus-vector nematodes (Nematoda: Longidoridae and Trichodoridae) from soil samples. Nematologia Mediterranea 16, 93-99.
    • (1988) Nematologia Mediterranea , vol.16 , pp. 93-99
    • Brown, D.J.F.1    Boag, B.2
  • 5
    • 84980198823 scopus 로고
    • The occurrence and distribution of nepoviruses and associated vector Longidorus and Xiphinema nematodes in Europe and the Mediterranean basin
    • BROWN, D.J.F. & TRUDGILL, D.L. (1990). The occurrence and distribution of nepoviruses and associated vector Longidorus and Xiphinema nematodes in Europe and the Mediterranean basin. EPPO/OEPP Bulletin 19, 479-489.
    • (1990) EPPO/OEPP Bulletin , vol.19 , pp. 479-489
    • Brown, D.J.F.1    Trudgill, D.L.2
  • 6
    • 0004074315 scopus 로고
    • The occurrence of Longidoridae (Nematoda: Dorylaimida) in western USSR with further comments on longidorid nematodes in Europe and the Mediterranean Basin
    • BROWN, D.J.F., TAYLOR, C.E., CHOLEVA, B. & ROMANENKO, N.D. (1990). The occurrence of Longidoridae (Nematoda: Dorylaimida) in western USSR with further comments on longidorid nematodes in Europe and the Mediterranean Basin. Nematologia Mediterranea 18, 199-207.
    • (1990) Nematologia Mediterranea , vol.18 , pp. 199-207
    • Brown, D.J.F.1    Taylor, C.E.2    Choleva, B.3    Romanenko, N.D.4
  • 7
    • 0027931784 scopus 로고
    • A middle-repetitive DNA sequence element in the sheep parasitic nematode, Trichostrongylus colubriformis
    • CALLAGHAN, M.J. & BEH, K.J.A. (1994). A middle-repetitive DNA sequence element in the sheep parasitic nematode, Trichostrongylus colubriformis. Parasitology 109, 345-350.
    • (1994) Parasitology , vol.109 , pp. 345-350
    • Callaghan, M.J.1    Beh, K.J.A.2
  • 8
    • 0029966845 scopus 로고    scopus 로고
    • Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA
    • CHEUNG, V.G. & NELSON, S.F. (1996). Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA. Proceedings of the National Academy of Sciences of the United States of America 93, 14676-14679.
    • (1996) Proceedings of the National Academy of Sciences of the United States of America , vol.93 , pp. 14676-14679
    • Cheung, V.G.1    Nelson, S.F.2
  • 10
    • 0009167954 scopus 로고
    • The status of some plants as hosts for four populations of Xiphinema index (Nematoda: Dorylaimida)
    • COIRO, M.I. & BROWN, D.J.F. (1984). The status of some plants as hosts for four populations of Xiphinema index (Nematoda: Dorylaimida). Revue de Nématologie 7, 283-286.
    • (1984) Revue de Nématologie , vol.7 , pp. 283-286
    • Coiro, M.I.1    Brown, D.J.F.2
  • 11
    • 0037178261 scopus 로고    scopus 로고
    • Characterization of the (GAAA) microsatellite region in the plant parasitic nematode Meloidogyne artiellia
    • DE LUCA, F., REYES, A., VERONICO, P., DI VITO, M., LAMBERTI, F. & DE GIORGI, C. (2002). Characterization of the (GAAA) microsatellite region in the plant parasitic nematode Meloidogyne artiellia. Gene 293, 191-198.
    • (2002) Gene , vol.293 , pp. 191-198
    • De Luca, F.1    Reyes, A.2    Veronico, P.3    Di Vito, M.4    Lamberti, F.5    De Giorgi, C.6
  • 12
    • 0030829855 scopus 로고    scopus 로고
    • RNAviz, a program for the visualization of RNA secondary structure
    • DE RIJK, P. & DE WACHTER, R. (1997). RNAviz, a program for the visualization of RNA secondary structure. Nucleic Acids Research 25, 4679-4684.
    • (1997) Nucleic Acids Research , vol.25 , pp. 4679-4684
    • De Rijk, P.1    De Wachter, R.2
  • 16
    • 0029679840 scopus 로고    scopus 로고
    • Microsatellites: Evolution and mutational processes
    • Chadwick, D. & Cardew, G. (Eds). Ciba Foundation Symposium, Chichester, UK, Wiley
    • FREIMER, N.B. & SLATKIN, M. (1996). Microsatellites: evolution and mutational processes. In: Chadwick, D. & Cardew, G. (Eds). Variation of the human genome. Ciba Foundation Symposium, Chichester, UK, Wiley, pp. 51-72.
    • (1996) Variation of the Human Genome , pp. 51-72
    • Freimer, N.B.1    Slatkin, M.2
  • 18
    • 0032769574 scopus 로고    scopus 로고
    • Two SINE families associated with equine microsatellite loci
    • GALLAGHER, P.C., LEAR, T.L., COOGLE, L.D. & BAILEY, E. (1999). Two SINE families associated with equine microsatellite loci. Mammalian Genome 10, 140-144.
    • (1999) Mammalian Genome , vol.10 , pp. 140-144
    • Gallagher, P.C.1    Lear, T.L.2    Coogle, L.D.3    Bailey, E.4
  • 19
    • 0036263181 scopus 로고    scopus 로고
    • Levels of DNA polymorphism vary with mating system in the nematode genus Caenorhabditis
    • GRAUSTEIN, A., GASPAR, J.M., WALTERS, J.R. & PALOPOLI, M.F. (2002). Levels of DNA polymorphism vary with mating system in the nematode genus Caenorhabditis. Genetics 161, 99-107.
    • (2002) Genetics , vol.161 , pp. 99-107
    • Graustein, A.1    Gaspar, J.M.2    Walters, J.R.3    Palopoli, M.F.4
  • 20
    • 0027298218 scopus 로고
    • PCR amplification of megabase DNA with tagged random primers (T-PCR)
    • GROTHUES, D., CANTOR, C.R. & SMITH, C.L. (1993). PCR amplification of megabase DNA with tagged random primers (T-PCR). Nucleic Acids Research 21, 1321-1322.
    • (1993) Nucleic Acids Research , vol.21 , pp. 1321-1322
    • Grothues, D.1    Cantor, C.R.2    Smith, C.L.3
  • 21
    • 0029597867 scopus 로고
    • The contribution of DNA slippage to genome evolution
    • HANCOCK, J.M. (1995). The contribution of DNA slippage to genome evolution. Journal of Molecular Evolution 41, 1038-1047.
    • (1995) Journal of Molecular Evolution , vol.41 , pp. 1038-1047
    • Hancock, J.M.1
  • 22
    • 0002715940 scopus 로고    scopus 로고
    • Microsatellites and other simple sequences: Genomic context and mutational mechanisms
    • Goldstein, D.B. & Schlötterer, E. (Eds). Oxford, UK, Oxford University Press
    • HANCOCK, J.M. (1999). Microsatellites and other simple sequences: genomic context and mutational mechanisms. In: Goldstein, D.B. & Schlötterer, E. (Eds). Microsatellites: evolution and application. Oxford, UK, Oxford University Press, pp. 1-9.
    • (1999) Microsatellites: Evolution and Application , pp. 1-9
    • Hancock, J.M.1
  • 23
    • 0012630725 scopus 로고
    • From virus-like to virus diseases: Some unresolved problems including immunity and ideas for researching them
    • HEWITT, W.B. (1985). From virus-like to virus diseases: some unresolved problems including immunity and ideas for researching them. Phytopathologia Mediterranea 24, 1-7.
    • (1985) Phytopathologia Mediterranea , vol.24 , pp. 1-7
    • Hewitt, W.B.1
  • 24
    • 0000150235 scopus 로고
    • Nematode vector of soil-borne virus of grapevines
    • HEWITT, W.B., RASKI, D.J. & GOHEEN, A.C. (1958). Nematode vector of soil-borne virus of grapevines. Phytopathology 48, 586-595.
    • (1958) Phytopathology , vol.48 , pp. 586-595
    • Hewitt, W.B.1    Raski, D.J.2    Goheen, A.C.3
  • 25
    • 0002150997 scopus 로고    scopus 로고
    • Nucleic Acids IV: Sequencing and cloning
    • Hillis, D.M., Moritz, C. & Mable, B.K. (Eds). Sunderland, MA, USA, Sinauer Associates Inc., Publishers
    • HILLIS, D.M., MABLE, B.K., LARSON, A., DAVIS, S.K. & ZIMMER, E.A. (1996). Nucleic Acids IV: sequencing and cloning. In: Hillis, D.M., Moritz, C. & Mable, B.K. (Eds). Molecular systematics. Sunderland, MA, USA, Sinauer Associates Inc., Publishers, pp. 321-384.
    • (1996) Molecular Systematics , pp. 321-384
    • Hillis, D.M.1    Mable, B.K.2    Larson, A.3    Davis, S.K.4    Zimmer, E.A.5
  • 28
    • 0024514081 scopus 로고
    • A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene
    • LITT, M. & LUTY, J.A. (1989). A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. American Journal of Human Genetics 44, 397-401.
    • (1989) American Journal of Human Genetics , vol.44 , pp. 397-401
    • Litt, M.1    Luty, J.A.2
  • 29
    • 0030037537 scopus 로고    scopus 로고
    • A revised polytomous key for the identification of species of the genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) with exclusion of the X. americanum-group: Supplement 2
    • LOOF, P.A.A., LUC, M. & BAUJARD, P. (1996). A revised polytomous key for the identification of species of the genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) with exclusion of the X. americanum-group: Supplement 2. Systematic Parasitology 33, 23-29.
    • (1996) Systematic Parasitology , vol.33 , pp. 23-29
    • Loof, P.A.A.1    Luc, M.2    Baujard, P.3
  • 30
    • 0024512337 scopus 로고
    • Cloning defined regions of the human genome by microdissection of banded chromosomes and enzymatic amplification
    • LUDECKE, H.J., SENGER, G., CLAUSSEN, U. & HORSTHEMKE, B. (1989). Cloning defined regions of the human genome by microdissection of banded chromosomes and enzymatic amplification. Nature 338, 348-350.
    • (1989) Nature , vol.338 , pp. 348-350
    • Ludecke, H.J.1    Senger, G.2    Claussen, U.3    Horsthemke, B.4
  • 31
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • MANTEL, N. (1967). The detection of disease clustering and a generalized regression approach. Cancer Research 27, 209-220.
    • (1967) Cancer Research , vol.27 , pp. 209-220
    • Mantel, N.1
  • 32
    • 0018147653 scopus 로고
    • Estimation of average heterozygocity and genetic distance from a small number of individuals
    • NEI, M. (1978). Estimation of average heterozygocity and genetic distance from a small number of individuals. Genetics 89, 583-590.
    • (1978) Genetics , vol.89 , pp. 583-590
    • Nei, M.1
  • 33
    • 1842671204 scopus 로고
    • Studies on the host range and pathogenicity of Xiphinema index
    • RADEWALD, J.D. & RASKI, D.J. (1962). Studies on the host range and pathogenicity of Xiphinema index. Phytopathology 52, 749-784.
    • (1962) Phytopathology , vol.52 , pp. 749-784
    • Radewald, J.D.1    Raski, D.J.2
  • 34
    • 0033084050 scopus 로고    scopus 로고
    • Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley
    • RAMSAY, L., MACAULEY, M., CARDEL, L., MORGANTE, M., IVANISSEVICH, S.D., MAESTRI, E., POWELL, W. & WAUGH, R. (1999). Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley. The Plant Journal 17, 415-425.
    • (1999) The Plant Journal , vol.17 , pp. 415-425
    • Ramsay, L.1    Macauley, M.2    Cardel, L.3    Morgante, M.4    Ivanissevich, S.D.5    Maestri, E.6    Powell, W.7    Waugh, R.8
  • 35
    • 0029178096 scopus 로고
    • An exact test for population differentiation
    • RAYMOND, M. & ROUSSET, F. (1995a). An exact test for population differentiation. Evolution 49, 1280-1283.
    • (1995) Evolution , vol.49 , pp. 1280-1283
    • Raymond, M.1    Rousset, F.2
  • 36
    • 0000262278 scopus 로고
    • GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism
    • RAYMOND, M. & ROUSSET, F. (1995b). GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86, 248-249.
    • (1995) Journal of Heredity , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 37
    • 0026397312 scopus 로고
    • Comments on the taxonomy, occurrence and distribution of Longidoridae (Nematoda) in North America
    • ROBBINS, R.T. & BROWN, D.J.F. (1991). Comments on the taxonomy, occurrence and distribution of Longidoridae (Nematoda) in North America. Nematologica 37, 395-419.
    • (1991) Nematologica , vol.37 , pp. 395-419
    • Robbins, R.T.1    Brown, D.J.F.2
  • 40
    • 0028804572 scopus 로고
    • MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation
    • SMIT, A.F.A. & RIGGS, A.D. (1995). MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation. Nucleic Acids Research 23, 98-102.
    • (1995) Nucleic Acids Research , vol.23 , pp. 98-102
    • Smit, A.F.A.1    Riggs, A.D.2
  • 42
    • 0024387394 scopus 로고
    • Hypervariability of simple sequences as a general source for polymorphic DNA microsatellites
    • TAUTZ, D. (1989). Hypervariability of simple sequences as a general source for polymorphic DNA microsatellites. Nucleic Acids Research 17, 6463-6471.
    • (1989) Nucleic Acids Research , vol.17 , pp. 6463-6471
    • Tautz, D.1
  • 43
    • 0026736251 scopus 로고
    • Degenerate Oligonucleotide-Primed PCR: General amplification of target DNA by a single degenerate primer
    • TELENIUS, H., CARTER, N.P., BEBB, C.E., NORDENSKJOLD, M., PONDER. B.A. & TUNACLIEFE, A. (1992). Degenerate Oligonucleotide-Primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 13, 718-725.
    • (1992) Genomics , vol.13 , pp. 718-725
    • Telenius, H.1    Carter, N.P.2    Bebb, C.E.3    Nordenskjold, M.4    Ponder, B.A.5    Tunacliefe, A.6
  • 44
    • 0034102423 scopus 로고    scopus 로고
    • Microsatellite loci in the phytoparasitic nematode Globodera
    • THIÉRY, M. & MUGNIÉRY, D. (2000). Microsatellite loci in the phytoparasitic nematode Globodera. Genome 43, 160-165.
    • (2000) Genome , vol.43 , pp. 160-165
    • Thiéry, M.1    Mugniéry, D.2
  • 45
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • THOMPSON, J.D., GIBSON, T.J., PLEWNIAK, F., JEANMOUGIN, F. & HIGGINS, D.G. (1997). The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24, 876-4882.
    • (1997) Nucleic Acids Research , vol.24 , pp. 876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 46
    • 1842771911 scopus 로고
    • Paratylenchus hamatus n. sp. and Xiphinema index n. sp., two nematodes associated with fig roots, with a note on Paratylenchus anceps Cobb
    • THORNE, G. & ALLEN, M.W. (1950). Paratylenchus hamatus n. sp. and Xiphinema index n. sp., two nematodes associated with fig roots, with a note on Paratylenchus anceps Cobb. Proceedings of the Helminthological Society of Washington 17, 27-35.
    • (1950) Proceedings of the Helminthological Society of Washington , vol.17 , pp. 27-35
    • Thorne, G.1    Allen, M.W.2
  • 47
    • 0027421165 scopus 로고
    • Sequence variability of the tetranucleotide repeat of the human beta-actin related pseudogene H-beta-Ac-psi-2 (ACTBP2) locus
    • URQUHART, A., KIMPTON, C.P. & GILL, P. (1993). Sequence variability of the tetranucleotide repeat of the human beta-actin related pseudogene H-beta-Ac-psi-2 (ACTBP2) locus. Human Genetics 92, 637-638.
    • (1993) Human Genetics , vol.92 , pp. 637-638
    • Urquhart, A.1    Kimpton, C.P.2    Gill, P.3
  • 48
    • 0025157834 scopus 로고
    • n polymorphisms
    • n polymorphisms. Genomics 7, 524-530.
    • (1990) Genomics , vol.7 , pp. 524-530
    • Weber, J.L.1
  • 49
    • 0024582686 scopus 로고
    • Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction
    • WEBER, J.L. & MAY, P.E. (1989). Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. American Journal of Human Genetics 44, 388-396.
    • (1989) American Journal of Human Genetics , vol.44 , pp. 388-396
    • Weber, J.L.1    May, P.E.2
  • 50
    • 0021566877 scopus 로고
    • Estimating F statistics for the analysis of population structure
    • WEIR, B.S. & COCKERHAM, C.C. (1984). Estimating F statistics for the analysis of population structure. Evolution 38, 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 51
    • 0033557235 scopus 로고    scopus 로고
    • Detailed chromosomal and molecular genetic analysis of single cells by whole genome amplification and comparative genomic hybridization
    • WELLS, D., SHERLOCK, J.K., HANDYSIDE, A.H. & DELHATY, J.D.A. (1999). Detailed chromosomal and molecular genetic analysis of single cells by whole genome amplification and comparative genomic hybridization. Nucleic Acids Research 27, 1214-1218.
    • (1999) Nucleic Acids Research , vol.27 , pp. 1214-1218
    • Wells, D.1    Sherlock, J.K.2    Handyside, A.H.3    Delhaty, J.D.A.4
  • 52
    • 0036007439 scopus 로고    scopus 로고
    • Strategies for microsatellite isolation: A review
    • ZANE, L., BARGELLONI, L. & PATARNELLO, T. (2002). Strategies for microsatellite isolation: a review. Molecular Ecology 11, 1-16.
    • (2002) Molecular Ecology , vol.11 , pp. 1-16
    • Zane, L.1    Bargelloni, L.2    Patarnello, T.3
  • 54
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
    • Barciszewski, J. & Clark, B.F.C. (Eds). NATO ASI Series, Kluwer Academic Publishers
    • ZUKER, M., MATHEWS, D.H. & TURNER, D.H. (1999). Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide. In: Barciszewski, J. & Clark, B.F.C. (Eds). RNA biochemistry and biotechnology. NATO ASI Series, Kluwer Academic Publishers, pp. 11-43.
    • (1999) RNA Biochemistry and Biotechnology , pp. 11-43
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.