Recent trends and spectroscopic methods for analysis of the protein conformation with circular dichroism

Fenxi Huaxue

Volumn 32, Issue 3, 2004, Pages 388-394

  Shen, Xingcan ^a,b   Liang, Hong ^a   He, Xiwen ^b   Wang, Xinsheng ^b  

^a GUANGXI NORMAL UNIVERSITY   (China)

^b NANKAI UNIVERSITY   (China)

Author keywords

Circular dichroism; Protein secondary structure; Protein tertiary structure; Review

Indexed keywords

PROTEIN; SULFUR DERIVATIVE;

ANALYTIC METHOD; CIRCULAR DICHROISM; DISULFIDE BOND; MECHANICAL PROBE; PROTEIN CONFORMATION; PROTEIN DETERMINATION; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; REVIEW; SPECTROSCOPY; ULTRAVIOLET SPECTROSCOPY;

EID: 1842630631     PISSN: 02533820     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (72)

1. Mestel R. Science, 1996, 273:184-189
2. Petchanikow C, Saborio G P, Anderes L, Frossard M-J, Olmedo M I, Soto C. FEBS Letters, 2001, 509:451-456
3. Greenfield N, Fasman G D. Biochemistry, 1969, 8:4108-4116
4. Saxena V P, Wetlaufer D B. Proc. Natl. Acad. Sci. USA, 1971, 68:969-972
5. Chen Y H, Yang J T. Biochem. Biophys. Res. Commun. 1971, 44:1285-1291
6. Brahms S, Brahm J. J. Mol. Biol., 1980, 138:149-178
7. Chang C T, Wu C-S C, Yang J T. Anal. Biochem., 1978, 91:13-31
8. Bolotina I A, Chekhov V O, Lugauskas V Y, Finkel'shtein A V, Ptitsyn O B. Mol. Biol., 1980, 14:701-709
9. Chen Y H, Yang J T, Martinez H M. Biochemistry, 1972, 11:4120-4131
10. Adler A J, Greenfield N, Fasman G D. Methods Enzymol., 1972, 27:675-735
11. Provencher S W, Glökner J. Biochemistry, 1981, 20:33-37
12. Hennessey J P, Johnson W C Jr. Biochemistry, 1981, 20:1085-1094
13. Manavalan P, Johnson W C Jr. Anal. Biochem., 1987, 167:76-85
14. Compton L A, Johnson W C Jr. Anal. Biochem., 1986, 155:155-167
15. Yang J T, Wu C-S C, Martinez H M. Meth. Enzymol., 1986, 130:208-269
16. Shubin V V, Khazin M L, Efimoyskaya T B. Mol. Biol. 1990, 24:165-176
17. Van Stokkum I H M, Spoelder H J W, Bloemendal M, Van Grondelle R, Groen F C A. Anal. Biochem., 1990, 191:110 -118
18. Perczel A, Hollosi M, Tusnady G, Fasman G D. Protein Eng., 1991, 4:669-679
19. Perczel A, Park K, Fasman G D. Proteins Struct. Funct. Genet., 1992, 13:57-69
20. Perczel A, Park K, Fasman G D. Anal. Biochem., 1992, 203:83-93
21. Pancoska P, Keiderling T A. Biochemistry, 1991, 30:6885-6895
22. Böhm G, Muhr R, Jaenicke R. Protein Eng., 1992, 5:191-195
23. Merolo J J, Andrade M A, Prieto A, Morán F. Neurocomputing, 1994, 6:443-454
24. Andrade M A, Chacan P, Merolo J J, Moran F. Protein Eng., 1993, 6:383-390
25. Sreerama N, Woody R W. J. Mol. Biol., 1994, 242:497-507
26. Sreerama N, Woody R W. Anal. Biochem., 1993, 209:32-44
27. Sreerama N, Woody R W. Biochemistry, 1994, 33:10022-10025
28. Sreerama N, Venyaminov S Y, Woody R W. Protein Sci., 1999, 8:370-380
29. Johnson W C Jr. Proteins Struct. Funct. Genet., 1999, 35:307-312
30. Tourmadje A, Alcorns W, Johnson W C Jr. Anal. Biochem., 1992, 200:321-331
31. Sreerama N, Venyaminov S Y, Woody R W. Anal. Biochem., 2000, 287:243-251
32. Sreerama N, Woody R W. Anal. Biochem., 2000, 287:252-260
33. Venyaminov S Y, Baikalov K A, Wu G-S C, Yang J T. Anal. Biochem., 1993, 214:17-24
34. Sreerama N, Venyaminov S Y, Woody R W. Biophys. J., 2001, 80:321a
35. Venyaminov S Y, Vassilenko K S. Anal. Biochem., 1994, 222:176-184
36. Manavalan P, Johnson W C Jr. Nature, 1983, 305:831-832
37. Kelly S M, Price N C. Biochim. Biophys. Acta, 1997, 1338:161-185
38. Price N C. Biotechnol. Appl. Biochem., 2000, 31:29-40
39. Dockal M, Carter D C, Rüker F. The Journal Biological Chemistry, 2000, 275:3042-3050
40. Yan Longfei, Sun Zhirong. Molecular Structure of Protein. Beijing: Tsinghua University Press, 1999: 11-170
41. Zhao Nanming, Zhou Haimeng. Biophysics. Beijing: China Higher Education Press, 2000: 5-344
42. Yang Pin, Gao Fei. Principles of Bioinorganic Chemistry. Beijing: Science Press, 2002: 22-352
43. Yang J T, Wu C-S C, Martinez H M. Methods Enzymol., 1996, 130:208-269
44. Johnson W C Jr. Annu. Rev. Biophys. Biophys. Chem., 1988, 17:145-166
45. Venyaminov S Y, Yang J Y. Determination of Protein Secondary Structure. In Circular Dichroism and the Conformational Analysis of Biomolecules. New York: Plenum, 1996: 69-107
46. Greenfield N J. Anal. Biochem., 1996, 235:1-10
47. Sreerama N, Woody R W. Circular Dichroism of Peptides and Proteins. In Circular Dichroism: Principles and Applications. 2nd ed., New York; Wiley, 1990: 601-620
48. Lin Behai. Prog. Biochem. Biophys., 1994, 21(1:):67-69
49. Zhu Yongchun, Cheng Guangjin, Dong Shaojun. Progress in Natural Science, 2000, 10(12):1071-1077
50. Keiderling T A. Current Opinion in Chemical Biology, 2002, 6(5):682-688
51. Pelton J T, Mclean L R. Anal. Biochem., 2000, 277:167-176
52. Goa J. Scand. J. Clin. Lab. Invest., 1953, 5:218-222
53. Lang C A. Anal. Chem. , 1958, 30:1692-1694
54. Edellhoch H. Biochemistry, 1967, 6:1948-1954
55. Gill S C, von Hippie P H. Anal. Chem., 1989, 182:319-326
56. Monisett J D, David J S, Pownall H J, Gotto A M Jr. Biochemistry, 1973, 12:1290-1299
57. Levitt M, Chothia C. Nature, 1976, 261:552-558
58. Shen X C, Liang H, Guo J H, Song C, He X W, Yuan Y Z. Journal of Inorganic Biochemistry, 2003, 95: 124-130
59. Bo Ming, Zhou Li. Chinese J. Biochem. Mol. Bio., 2002, 18 (5):633-637
60. Gao Feng, Sha Yinlin, Qiu Yang, Wang Yuefeng, Li Yinling, Lai Luhua, Wu Houming. Acta Phys. Chim. Sin., 2001, 17(7):619-621
61. Zhou Yanjiao, Li Lingyuan, Ru Binggen. Chin. J. Biochem. Mol. Bio., 2000, 16(4):483-488
62. Greenfield N J. Trends in Anal. Chem., 1999, 18(4):236-244
63. Shen Xingcan, Yuan Qi, Liang Hong, Yan Haigang, He Xiwen. Science in Chinese (Series B), 2003, 32(2):176-184
64. McGregor T D, Bousfiel W, Qu Y, Farrell N. Journal of Inorganic Biochemistry, 2002, 91(1):212-219
65. Khan M A, Muzammil S, Musarrat J. International Journal of Biological Macromolecules, 2002, 30:243-249
66. Zhu Y C, Cheng G J, Dong S J. Chinese Chemical Letters, 2000, 11(2):149-152
67. Huang W M, Zhang Z L, Han X J, Tang J L, Peng Z Q, Dong S J, Wang E K. Biophysical Chemistry, 2001, 94:165-173
68. Noordermeer M A, Veldink G A, Vliegenthart J F G. FEBS Letters, 2001, 489:229-232
69. Cai Guoyou, Hou Yuxia, Ding Xiaolan, Li Tao, Shen Ziwei, Xi Baoshu. Acta Photonica Sinica, 2000, 29(4):289-292
70. Barteri M, Gaudiano M C, Rotella S, Benagiano G, Pala A. Biochim. Biophys. Acta (BBA)/Protein Structure and Molecular Enzymology, 2000, 1479:255-264
71. Gursky O, Aleshkov S. Biochim. Biophys. Acta (BBA)/Protein Structure and Molecular Enzymology, 2000, 1476(1):93 -102
72. Ou W B, Park Y D, Zhou H M. The International Journal of Biochemistry and Cell Biology, 2002, 34(2):136-147