Pancreatic triacylglycerol lipase in a hibernating mammal. I. Novel genomic organization

Physiological Genomics

Volumn 16, Issue , 2004, Pages 119-130

  Squire, Teresa L ^a   Andrews, Matthew T ^b,c  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF MINNESOTA DULUTH   (United States)

^c UNIVERSITY OF MINNESOTA MEDICAL SCHOOL   (United States)

Author keywords

Endogenous retrovirus; Genome; Hibernation; Promoter; Retroviral insertion

Indexed keywords

COMPLEMENTARY DNA; TRIACYLGLYCEROL LIPASE;

5' UNTRANSLATED REGION; ANIMAL TISSUE; ARTICLE; COMPARATIVE GENOMIC HYBRIDIZATION; DNA ISOLATION; DNA LIBRARY; EXON; FRAMESHIFT MUTATION; GENE EXPRESSION; GENE IDENTIFICATION; GENE INSERTION; GENE ISOLATION; GENE SEQUENCE; HIBERNATION; LONG TERMINAL REPEAT; MAMMAL; MOLECULAR CLONING; NONHUMAN; NONSENSE MUTATION; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN LOCALIZATION; PTL GENE; RETROVIRUS; SEQUENCE ALIGNMENT; SOUTHERN BLOTTING; SPECIES DIFFERENCE; SQUIRREL;

ADIPOSE TISSUE; ANIMALS; BASE SEQUENCE; BLOTTING, SOUTHERN; CLONING, MOLECULAR; DNA, COMPLEMENTARY; ENDOGENOUS RETROVIRUSES; EVOLUTION, MOLECULAR; GENOME, VIRAL; GENOMIC LIBRARY; GENOMICS; HIBERNATION; HUMANS; LIPASE; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; MYOCARDIUM; PANCREAS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA SPLICE SITES; RNA, MESSENGER; SCIURIDAE; SEQUENCE ANALYSIS, DNA; TERMINAL REPEAT SEQUENCES;

ANIMALIA; INSERTION SEQUENCES; MAMMALIA; SCIURIDAE; SPERMOPHILUS; SPERMOPHILUS TRIDECEMLINEATUS; UNIDENTIFIED RETROVIRUS;

EID: 1842587660     PISSN: 15312267     EISSN: None     Source Type: Journal    
DOI: 10.1152/physiolgenomics.00167.2002     Document Type: Article

References (38)

1. Akiyoshi DE, Denaro M, Zhu H, Greenstein JL, Banerjee P, and Fishman JA. Identification of a full-length cDNA for an endogenous retrovirus of miniature swine. J Virol 72: 4503-4507, 1998.
2. Andrews MT, Squire TL, Bowen CM, and Rollins MB. Low-temperature carbon utilization is regulated by novel gene activity in the heart of a hibernating mammal. Proc Natl Acad Sci USA 95: 8392-8397, 1998.
3. Bauer VW, Squire TL, Lowe ME, and Andrews MT. Expression of a chimeric retroviral-lipase mRNA confers enhanced lipolysis in a hibernating mammal. Am J Physiol Regul Integr Comp Physiol 281: R1186-R1192, 2001.
4. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, and Wheeler DL. GenBank. Nucleic Acids Res 28: 15-18, 2000.
5. Brockerhoff H and Jensen RG. Lipolytic Enzymes. New York: Academic, 1974.
6. Brown P. Integration. In: Retroviruses, edited by Coffin JM, Hughes SH, and Varmus HE. New York: Cold Spring Harbor Laboratory, 1997, p. 161-203.
7. Chen HR and Barker WC. Nucleotide sequences of the retroviral long terminal repeats and their adjacent regions. Nucleic Acids Res 12: 1767-1778, 1984.
8. Chomczynski P and Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162: 156-159, 1987.
9. Curtis SE and Haselkorn R. Isolation and sequence of the gene for the large subunit of ribulose-1,5-bisphosphate carboxylase from the cyanobacterium Anabaena 7120. Proc Natl Acad Sci USA 80: 1835-1839, 1983.
10. Frech K, Danescu-Mayer J, and Werner T. A novel method to develop highly specific models for regulatory units detects a new LTR in GenBank which contains a functional promoter. J Mol Biol 270: 674-687, 1997.
11. Goldstrohm AC, Greenleaf AL, and Garcia-Blanco MA. Co-transcriptional splicing of pre-messenger RNAs: considerations for the mechanism of alternative splicing. Gene 277: 31-47, 2001.
12. Gupta RC, Roe BA, and Randerath K. The nucleotide sequence of human tRNAGly (anticodon GCC). Nucleic Acids Res 7: 959-970, 1979.
13. Johnson WE and Coffin JM. Constructing primate phylogenies from ancient retrovirus sequences. Proc Natl Acad Sci USA 96: 10254-10260, 1999.
14. Jordan IK, Rogozin IB, Glazko GV, and Koonin EV. Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends Genet 19: 68-72, 2003.
15. Landry JR, Rouhi A, Medstrand P, and Mager DL. The opitz syndrome gene mid1 is transcribed from a human endogenous retroviral promoter. Mol Biol Evol 19: 1934-1942, 2002.
16. Lowe ME. Molecular mechanisms of rat and human pancreatic triglyceride lipases. J Nutr 127: 549-557, 1997.
17. Lykidis A, Mougios V, and Arzoglou P. Kinetics of the two-step hydrolysis of triacylglycerol by pancreatic lipases. Eur J Biochem 230: 892-898, 1995.
18. Mager DL and Freeman JD. HERV-H endogenous retroviruses: presence in the New World branch but amplification in the Old World primate lineage. Virology 213: 395-404, 1995.
19. Medstrand P, Landry JR, and Mager DL. Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans. J Biol Chem 276: 1896-1903, 2001.
20. Mercer JM and Roth VL. The effects of Cenozoic global change on squirrel phylogeny. Science 299: 1568-1572, 2003.
21. Parent I, Qin Y, Vandenbroucke AT, Walon C, Delferriere N, Godfroid E, and Burtonboy G. Characterization of a C-type retrovirus isolated from an HIV infected cell line: complete nucleotide sequence. Arch Virol 143: 1077-1092, 1998.
22. Petropoulos C. Retroviral taxonomy, protein structures, sequences, and genetics maps. In: Retroviruses, edited by Coffin JM, Hughes SH, and Varmus HE. New York: Cold Spring Harbor Laboratory, 1997, p. 757-805.
23. Quandt K, Frech K, Karas H, Wingender E, and Werner T. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res 23: 4878-4884, 1995.
24. Remington MP, Hoffman PM, Ruscetti SK, and Masuda M. Complete nucleotide sequence of a neuropathogenic variant of Friend murine leukemia virus PVC-211. Nucleic Acids Res 20: 3249, 1992.
25. Robins DM and Samuelson LC. Retrotransposons and the evolution of mammalian gene expression. Genetica 86: 191-201, 1992.
26. Robinson M, Catzeflis F, Briolay J, and Mouchiroud D. Molecular phylogeny of rodents, with special emphasis on murids: evidence from nuclear gene LCAT. Mol Phylogenet Evol 8: 423-434, 1997.
27. Sambrook J, Fritsch EF, and Maniatis T. Molecular Cloning. New York: Cold Spring Harbor Laboratory, 1989.
28. Schulte AM, Malerczyk C, Cabal-Manzano R, Gajarsa JJ, List HJ, Riegel AT, and Wellstein A. Influence of the human endogenous retrovirus-like element HERV-E.PTN on the expression of growth factor pleiotrophin: a critical role of a retroviral Sp1-binding site. Oncogene 19: 3988-3998, 2000.
29. Sims HF, Jennens ML, and Lowe ME. The human pancreatic lipase-encoding gene: structure and conservation of an Alu sequence in the lipase gene family. Gene 131: 281-285, 1993.
30. Squire TL, Lowe ME, Bauer VW, and Andrews MT. Pancreatic triacylglycerol lipase in a hibernating mammal. II. Cold-adapted function and differential expression. Physiol Genomics 16: 131-140, 2003. First published October 28, 2003; 10.1152/physiolgenomics.00168.2002.
31. Stavenhagen JB and Robins DM. An ancient provirus has imposed androgen regulation on the adjacent mouse sex-limited protein gene. Cell 55: 247-254, 1988.
32. Telesnitsky A and Goff SP. Reverse transcription and the generation of retroviral DNA. In: Retroviruses, edited by Coffin JM, Hughes SH, and Varmus HE. New York: Cold Spring Harbor Laboratory, 1997, p. 121-160.
33. Ting CN, Rosenberg MP, Snow CM, Samuelson LC, and Meisler MH. Endogenous retroviral sequences are required for tissue-specific expression of a human salivary amylase gene. Genes Dev 6: 1457-1465, 1992.
34. Tsujita T, Sumida M, Sumiyoshi M, Kameda K, and Okuda H. Alkaline lipase from brain: is it the same enzyme as pancreatic lipase from pancreas? Arch Biochem Biophys 352: 44-50, 1998.
35. Vogt VM. Retroviral virions and genomes. In: Retroviruses, edited by Coffin JM, Hughes SH, and Varmus HE. New York: Cold Spring Harbor Laboratory, 1997, p. 27-69.
36. Waterston RH et al. (Mouse Genome Sequencing Consortium). Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562, 2002.
37. Wilkinson DA, Mager DL, and Leong JC. Endogenous human retroviruses. In: The Retroviridae, edited by Levy JA. New York: Plenum, 1994, p. 465-535.
38. Wolgamot G, Bonham L, and Miller AD. Sequence analysis of Mus dunni endogenous virus reveals a hybrid VL30/gibbon ape leukemia virus-like structure and a distinct envelope. J Virol 72: 7459-7466, 1998.