Frequency dependent and surface characterization of DNA immobilization and hybridization

Biosensors and Bioelectronics

Volumn 19, Issue 11, 2004, Pages 1537-1548

  Hang, Tin Christopher ^a   Guiseppi Elie, Anthony ^a,b  

^a Virginia Commonwealth University   (United States)

^b VIRGINIA COMMONWEALTH UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

DNA hybridization; DNA microarrays; Electrochemical impedance spectroscopy; Fourier transform infrared spectroscopy attenuated total reflectance; Oligonucleotides; Quartz crystal microbalance; Silanes

Indexed keywords

ADSORPTION; CELL IMMOBILIZATION; DNA; ELECTROCHEMISTRY; ELECTRODES; FOURIER OPTICS; GLASS; LITHOGRAPHY; OLIGOMERS; PLATINUM COMPOUNDS; QUARTZ; SPECTROSCOPY;

ELECTROCHEMICAL IMPEDANCE SPECTROSCOPY (EIS); HYBRIDIZATION; INTERDIGITATED MICROSENSOR ELECTRODES (IME); QUARTZ CRYSTAL MICROBALANCE (QCM);

BIOSENSORS;

3 GLYCIDOXYPROPYLTRIMETHOXYSILANE; AMINE; BUFFER; GLASS; OLIGOMER; PLATINUM; SILANE DERIVATIVE; SILICON DIOXIDE; SINGLE STRANDED DNA; UNCLASSIFIED DRUG; WATER;

ADSORPTION; ATTENUATION; CONFERENCE PAPER; COVALENT BOND; CRYSTAL; DNA BINDING; DNA HYBRIDIZATION; DNA MICROARRAY; ELECTROCHEMICAL IMPEDANCE SPECTROSCOPY; ELECTROCHEMISTRY; ELECTRODE; INFRARED SPECTROSCOPY; NUCLEIC ACID IMMOBILIZATION; OXIDATION; REFLECTOMETRY; SENSOR;

BIOSENSING TECHNIQUES; DNA; DNA PROBES; ELECTRIC IMPEDANCE; NUCLEIC ACID HYBRIDIZATION; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 1842453350     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bios.2003.12.014     Document Type: Conference Paper

References (68)

1. Banay M., Sarkar M., Graslund A. A library of IR bands on nucleic acids in solution. Biophys. Chem. 104(2):2003;477-488.
2. Bardea A., Patolsky F., Dagan A., Willner I. Sensing and amplification of oligonucleotide-DNA interactions by means of impedance spectroscopy: a route to a Tay-Sachs sensor. Chem. Commun. 1:1999;21-22.
3. Blohm D.H., Guiseppi-Elie A. New developments in microarray technology. Curr. Opin. Biotechnol. 12:2001;41-47.
4. Boon E.M., Ceres D.M., Drummond T.G., Hill M.G., Barton J.K. Mutation detection by electrocatalysis at DNA-modified electrodes. Nat. Biotechnol. 18:2000;1096-1100.
5. Brito R., Tremont R., Feliciano O., Cabrera C.R. Chemical derivatization of self-assembled 3-mercaptopropionic and 16-mercaptohexadecanoic acids at platinum surfaces with 3-aminopropyltrimethoxysilane: a spectroscopic and electochemical study. J. Electroanal. Chem. 540:2003;53-59.
6. Case-Green S.C., Mir K.U., Pritchard C.E., Southern E.M. Analysing genetic information with DNA arrays. Curr. Opin. Biotechnol. 2:1998;404-410.
7. Choy J.-H., Kwak S.-Y., Jeong Y.-J., Park J.-S. Inorganic layered double hydroxides as nonviral vectors. Angew. Chem. Int. 39(22):2000;4041-4045.
8. Christopoulos T.K. Nucleic acid analysis. Anal. Chem. 71:1999;425-438.
9. 2 substrates: characterization by electrochemical impedance measurements and radiolabelling. Biosens. Bioelectron. 17:2002;405-412.
10. Denton D.D., Day D.R., Priore A., Senturia S.D., Anolick E.S., Sheider D. Moisture diffusion in polyimide films in integrated circuits. J. Electron. Mater. 14:1985;119-136.
11. Don T.-M., Bell J.P. Fourier transform infrared analysis of polycarbonate/epoxy mixtures cured with an aromatic amine. J. Appl. Polym. Sci. 69:1998;2395-2407.
12. Fan Z.H., Mangru S., Granzow R., Heaney P., Ho W., Dong Q., Kumar R. Dynamic DNA hybridization on a chip using paramagnetic beads. Anal. Chem. 71:1999;4851-4859.
13. Friedrich M.J. The arrival of biochip technology. Lab. Med. 30:1999;180-188.
14. Furtado L.M., Thompson M. Hybridization of complementary strand and single-base mutated oligonucleotides detected with an on-line acoustic wave sensor. Analyst. 123:1998;1937-1945.
15. Gheorghe M., Guiseppi-Elie A. Electrical frequency dependent characterization of DNA hybridization. Biosens. Bioelectron. 19(2):2003;95-102.
16. Graber J.H., O'Donnell M.J., Smith C.L., Cantor C.R. Advances in DNA diagnostics. Curr. Opin. Biotechnol. 9:1998;14-18.
17. Guedon P., Livache T., Martin F., Lesbre F., Roget A., Bidan G., Levy Y. Characterization and optimization of a real-time, parallel, label-free, polypyrrole-based DNA sensor by surface plasmon resonance imaging. Anal. Chem. 72:2000;6003-6009.
18. Guiseppi-Elie, A., 2003. Biochip Platforms for DNA Diagnostics. Business Briefing: PharmaTech. World Markets Research Centre, London, England.
19. Guiseppi-Elie, A., Sheppard, N.F., Jr., Lesho, M., 1998. Electrical impedance properties of chemically responsive hydrogels. In: Wise, D.L., Wnek, G.E., Trantolo, D.J., Gresser, J.D., Cooper, T.M. (Eds.), Electrical and Optical Polymer Systems: Fundamentals, Methods, and Applications. Marcel Dekker, New York, pp. 1187-1211.
20. Ihara T., Nakayama M., Murata M., Nakano K., Maeda M. Gene sensor using ferrocenyl oligonucleotide. Chem. Commun. 17:1997;1609-1610.
21. Kafatos F.C., Jones C.W., Efstratiadis A. Determination of nucleic acid sequence homologies and relative concentrations by a dot hybridization procedure. Nucleic Acids Res. 7:1979;1541-1552.
22. Kuhr W.G. Electrochemical DNA analysis comes of age. Nat. Biotechnol. 18:2000;1042-1043.
23. Lamture J.B., Beattie K.L., Burke B.E., Eggers M.D., Ehrlich D.J., Fowler R., Hollis M.A., Kosicki B.B., Reich R.K., Smith S.R. Direct detection of nucleic acid hybridization on the surface of a charge coupled device. Nucleic Acids Res. 22:1994;2121-2125.
24. Laureyn W., Nelis D., VanGerwen P., Baert K., Hermans L., Magnee R., Pireaux J.J., Maes G. Nanoscaled interdigitated titanium electrodes for impedimetric biosensing. Sens. Actuators B: Chem. 68:2000;360-370.
25. Lee T.-H., Kang E.-S., Bae B.-S. Catalytic effects of aluminum butoxyethoxide in sol-gel hybrid hard coatings. J. Sol-Gel Sci. Technol. 27:2003;23-29.
26. Lei, C., Gheorghe, M., Guiseppi-Elie, A., 2000. DNA immobilization and bioelectronic detection based on conducting polymers. In: Fall ACS National Meeting, Washington, DC, pp. 552-553.
27. Lodish, H., Baltimore, D., Berk, A., Zipursky, L.S., Matsudaira, P., Darnell, J., 1998. Nucleic Acids, the Genetic Code, and the Synthesis of Macromolecules. Molecular Cell Biology. Scientific American Books, New York, Chapter 4, pp. 101-140.
28. Marrazza, G., Chianella, I., Mascini, M., 1999a. Disposable DNA electrochemical biosensors for environmental monitoring. Anal. Chim. Acta 387 14 (1), 43-51.
29. Marrazza G., Chianella I., Mascini M. Disposable DNA electrochemical sensor for hybridization detection. Biosens. Bioelectron. 14:1999b;43-51.
30. Maskos U., Southern E.M. Oligonucleotide hybridizations on glass supports: a novel linker for oligonucleotide synthesis and hybridization properties of oligonucleotides synthesised in situ. Nucleic Acids Res. 20:1992;1679-1684.
31. Mauritz K.A., Payne J.T. [Perfluorosulfonate isomer]/silicate hybrid membranes via base-catalyzed in situ-gel processes for tetraethylorthosilicate. J. Membr. Sci. 168:2000;39-51.
32. Meth S., Sukenik C.N. Siloxane-anchored thin films on silicon dioxide-modified stainless steel. Thin Solid Films. 425:2003;49-58.
33. Mikkelsen S.R. Electrochemical biosensors for DNA sequence detection. Electroanalysis. 8:1996;15-19.
34. Moser I., Schalkhammer T., Mann-Buxbaum E., Hawa G., Rakohl M., Urban G., Pittner F. Advanced immobilization and protein techniques on thin film biosensors. Sens. Actuators B: Chem. 7:1992;356-362.
35. Moser I., Schalkhammer T., Pittner F., Urban G. Surface techniques for an electrochemical DNA biosensor. Biosens. Bioelectron. 12:1997;729-737.
36. Neuhaus H.J., Day D.R., Senturia S.D. Sodium transport in polyimide-silicon dioxide systems. J. Electron. Mater. 14:1985;379-404.
37. Nicolini C., Erokhin V., Facci P., Guerzoni S., Ross A., Paschkevitsch P. Quartz balance DNA sensor. Biosens. Bioelectron. 12:1997;613-618.
38. Parikh A.N., Liedberg B., Atre S.V., Ho M., Allara D.L. Correlation of molecular organization and substrate wettability in the self-assembly of n-alkylsiloxane monolayers. J. Phys. Chem. 99:1995;9996-10008.
39. Pope L.H., Davies M.C., Roberts C.J., Tendler S.J.B., Williams P.M. DNA analysis with scanning probe microscopy. Anal. Commun. 3:1998;5-7.
40. Qingwen L., Guoan L., Jun F., Dawen C., Qi O. Photoelectrochemistry as a novel strategy for DNA hybridization detection. Analyst. 125:2000;1908-1910.
41. Quan D., Kim Y., Yoon K.B., Shin W. Assembly of laccase over platinum oxide surface and application as an amperometric biosensor. Bull. Kor. Chem. Soc. 23:2002;385-390.
42. Ramsey G. DNA chips: state-of-the-art. Nat. Biotechnol. 16:1998;40-45.
43. Reichert J., Csáki A., Köhler J.M., Fritzsche W. Chip-based optical detection of DNA hybridization by means of nanobead labeling. Anal. Chem. 72:2000;6025-6029.
44. Sales J.A.A., Prado A.G.S., Airoldi C. The incorporation of propane-1,3-diamine into silylant epoxide group through homogeneous and heterogeneous routes. Polyhedron. 21:2002;2647-2651.
45. Salter, D.C., 1995. In: Proceedings of the IX International Conference on Electrical Bio-imedance, Heidelberg, Germany, pp. 17-20.
46. Scantlebury D., Guiseppi-Elie A., Eden D.A., Callow L.M. Simulated underfilm corrosion of coated mild steel using an artificial blister. Corrosion. 39:1983;108.
47. Schalkhammer T., Mann-Buxbaum E., Urban G., Pittner F. Electrochemical biosensors on thin-film metals and conducting polymers. J. Chromatogr. 510:1990;355-366.
48. Senturia S.D., Sheppard N.F. Jr., Lee H.L., Day D.R. In-situ measurement of the properties of curing systems with microdielectrometry. J. Adhesion. 15:1982;69-90.
49. Senturia S.D., Sheppard N.F. Jr., Poh S.Y., Appelman H.R. The feasibility of electrical monitoring of resin cure with the charge-flow transistor. Polym. Eng. Sci. 21:1981;113-118.
50. Sheppard N.F. Jr., Mears D.J., Guiseppi-Elie A. Model of an immobilized enzyme conductimetric urea biosensor. Biosens. Bioelectron. 11:1996;967-979.
51. Sheppard N.F. Jr., Senturia S.D. Chemical interpretation of the relaxed permittivity during epoxy resin cure. Polym. Eng. Sci. 26:1986;354-357.
52. Souteyard, E., Martin, J.R., Cloarec, J.P., Lawrence, M.F., 1996. GENFET: a new DNA biosensor. Eurosensors X, Leuven, Belgium, pp. 921-924.
53. Takenaka S., Uto Y., Saita H., Yokoyama M., Kondo H., Wilson W.D. Electrochemically active threading intercalator with high double stranded DNA selectivity. Chem. Commun. 10:1998;1111-1112.
54. Takenaka S., Yamashita K., Takagi M., Uto Y., Kondo H. DNA sensing on a DNA probe-modified electrode using ferrocenylnaphthalene diimide as the electrochemically active ligand. Anal. Chem. 72:2000;1334-1341.
55. Taylor S., Smith S., Windle B., Guiseppi-Elie A. Impact of surface chemistry and blocking strategies on DNA microarrays. Nucleic Acids Res. 31:2003;1-19.
56. Tribut O., Lessard Y., Reymann J.-M., Allain H., Bentue-Ferrer D. Pharmacogenomics. Med. Sci. Monit. 8:2002;RA152-163.
57. VanGerwen, P., Laureyn, W., Huyberechts, G., DeBeeck, M. O., Baert, K., Suls, J., Varlan, A., Sansen, W., Hermans, L., Mertens, R., 1997. Transducers. Chicago, IL, USA, pp. 907-910.
58. VanGerwen P., Laureyn W., Laureys W., Huyberechts G., DeBeeck M.O., Baert K., Suls J., Sansen W., Jacobs P., Hermans L., Mertens R. Nanoscaled interdigitated electrode arrays for biochemical sensors. Sens. Actuators B: Chem. 49:1998;73-80.
59. Vo-Dinh T. Development of a DNA biochip: principle and applications. Sens. Actuators B: Chem. 51:1998;52-59.
60. Vo-Dinh T., Alarie J.P., Isola N., Landis D., Wintenberg A.L., Ericson M.N. DNA biochip using a phototransistor integrated circuit. Anal. Chem. 71:1999;358-363.
61. Wang J., Bard A.J. Monitoring DNA immobilization and hybridization on surfaces by atomic force microscopy force measurements. Anal. Chem. 73:2001;2207-2212.
62. Wang J., Xiaohua C., Jonsson C., Balakrishnan M. Adsorptive stripping potentiometry of DNA at electrochemically pretreated carbon paste electrodes. Electroanalysis. 8:1996;20-24.
63. Wang J., Xiaohua C., Fernandes J.R., Grant D.H., Ozsoz M. Carbon fiber microelectrodes for adsorptive stripping analysis of trace nucleic acids. J. Electroanal. Chem. 441:1998;167-172.
64. Wang J., Jiang M., Mukherjee B. Flow detection of nucleic acids at a conducting polymer-modified electrode. Anal. Chem. 71:1999a;4095-4099.
65. Wang J., Zhang X., Parrado C., Rivas G. Controlled release of DNA from carbon-paste microelectrodes. Electrochem. Commun. 1:1999b;197-202.
66. Wang J., Kawde A.-N., Sahlin E. Renewable pencil electrodes for highly sensitive stripping potentiometric measurements of DNA and RNA. Analyst. 125:2000;5-7.
67. Xu D.-K., Ma L.-R., Liu Y.-Q., Jiang Z.-H., Liu Z.-H. Development of chemiluminescent biosensing of nucleic acids based on oligonucleotide- immobilized gold surfaces. Analyst. 124:1999;533-536.
68. Zhao Y.-D., Pang D.-W., Hu S., Wang Z.-L., Cheng J.-K., Dai H.-P. DNA-modified electrodes. Part 4. Optimization of covalent immobilization of DNA on self-assembled monolayers. Talanta. 49:1999;751-756.